Wall clock time and date at job start Tue Mar 31 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.50694 * 109.47220 * 239.99880 * 2 1 3 5 5 H 1.08002 * 120.00508 * 241.34279 * 4 2 1 6 6 C 1.37881 * 119.99953 * 61.34647 * 4 2 1 7 7 N 1.31507 * 120.00225 * 193.97247 * 6 4 2 8 8 Si 1.86807 * 119.99723 * 13.97869 * 6 4 2 9 9 H 1.48497 * 109.47133 * 84.54839 * 8 6 4 10 10 H 1.48498 * 109.46792 * 204.54994 * 8 6 4 11 11 H 1.48504 * 109.47203 * 324.54534 * 8 6 4 12 12 C 1.53002 * 109.47165 * 120.00084 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99945 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21588 * 120.00560 * 359.72403 * 14 13 12 16 16 C 1.47546 * 120.00215 * 180.02562 * 14 13 12 17 17 C 1.39808 * 120.15442 * 359.72408 * 16 14 13 18 18 C 1.37747 * 119.98539 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.35661 * 0.02587 * 18 17 16 20 20 C 1.38442 * 120.37154 * 359.97438 * 19 18 17 21 21 C 1.39288 * 119.91620 * 359.74135 * 20 19 18 22 22 O 1.36204 * 108.71849 * 179.83035 * 21 20 19 23 23 C 1.43989 * 105.58302 * 343.08336 * 22 21 20 24 24 O 1.36531 * 131.49954 * 180.02562 * 20 19 18 25 25 H 1.09004 * 109.46900 * 309.36563 * 1 2 3 26 26 H 1.08996 * 109.47487 * 69.36892 * 1 2 3 27 27 H 1.09005 * 109.47042 * 189.36974 * 1 2 3 28 28 H 1.09009 * 109.47297 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47355 * 300.00165 * 3 2 1 30 30 H 1.09006 * 109.47187 * 60.00475 * 3 2 1 31 31 H 0.97000 * 120.00293 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.47297 * 180.02562 * 12 2 1 33 33 H 1.08995 * 109.47495 * 60.00221 * 12 2 1 34 34 H 0.96992 * 120.00304 * 359.97438 * 13 12 2 35 35 H 1.08002 * 120.00800 * 359.95106 * 17 16 14 36 36 H 1.08004 * 119.82663 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.81599 * 179.97438 * 19 18 17 38 38 H 1.08997 * 110.57124 * 268.33668 * 23 22 21 39 39 H 1.08995 * 110.70307 * 145.51717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9725 -3.5459 8 14 1.0275 1.5007 -2.6683 9 1 2.1416 2.4817 -2.7083 10 1 0.2469 1.5865 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5729 -1.4821 3.7811 16 6 1.3854 0.2043 4.8743 17 6 0.5853 1.3440 4.7498 18 6 0.1273 1.9900 5.8769 19 6 0.4553 1.5170 7.1370 20 6 1.2466 0.3897 7.2774 21 6 1.7122 -0.2774 6.1467 22 8 2.4640 -1.3409 6.5453 23 6 2.7872 -1.0904 7.9260 24 8 1.7015 -0.2639 8.3864 25 1 -0.3633 0.6518 0.7945 26 1 -0.3634 0.3621 -0.9617 27 1 -0.3633 -1.0140 0.1673 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6973 -0.6300 -4.4267 32 1 3.1301 -0.7209 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 0.9943 0.7582 2.3565 35 1 0.3268 1.7182 3.7702 36 1 -0.4903 2.8705 5.7778 37 1 0.0917 2.0305 8.0148 38 1 3.7350 -0.5583 8.0070 39 1 2.8235 -2.0232 8.4886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457985705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:58 Heat of formation + Delta-G solvation = -50.589397 kcal Electronic energy + Delta-G solvation = -23243.311473 eV Core-core repulsion = 19732.128697 eV Total energy + Delta-G solvation = -3511.182776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.41774 -39.61294 -37.71649 -36.78190 -36.31751 -33.41834 -31.71458 -30.87934 -30.20016 -26.45117 -26.20522 -26.05772 -25.00628 -23.69233 -22.98203 -20.53913 -19.32896 -18.33957 -18.13238 -17.51606 -16.88916 -16.19729 -15.98468 -15.26800 -15.07391 -14.95686 -14.69074 -14.38900 -13.83844 -13.61910 -13.40150 -13.13221 -12.96359 -12.80048 -12.68084 -12.33091 -12.23444 -12.06388 -11.89007 -11.34424 -11.18295 -10.45749 -10.33761 -10.19118 -10.08688 -9.64238 -9.16668 -9.14123 -8.70713 -8.55779 -8.45834 -8.33551 -6.15715 -4.13189 0.56893 0.87647 2.49273 2.88316 3.19644 3.22609 3.29302 3.37583 3.43661 3.67757 4.25096 4.34223 4.44787 4.56658 4.74179 4.76810 4.85567 5.00458 5.14762 5.16619 5.60286 5.70130 5.78826 5.90115 5.99856 6.02072 6.04123 6.09756 6.32685 6.45755 6.49921 6.61184 6.67228 6.74447 6.85021 6.93707 7.19462 7.41007 7.70401 7.86687 8.42883 8.53851 8.89819 9.47873 10.97381 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.003743 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.425428 B = 7479.345230 C = 8120.320665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.142 3.858 13 N -0.715 5.715 14 C 0.547 3.453 15 O -0.529 6.529 16 C -0.113 4.113 17 C -0.079 4.079 18 C -0.118 4.118 19 C -0.081 4.081 20 C 0.018 3.982 21 C 0.096 3.904 22 O -0.280 6.280 23 C 0.207 3.793 24 O -0.309 6.309 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 7.795 21.720 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.020 3.980 13 N -0.367 5.367 14 C 0.333 3.667 15 O -0.407 6.407 16 C -0.117 4.117 17 C -0.098 4.098 18 C -0.136 4.136 19 C -0.100 4.100 20 C -0.026 4.026 21 C 0.049 3.951 22 O -0.194 6.194 23 C 0.095 3.905 24 O -0.226 6.226 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.045 6.816 21.677 22.926 hybrid contribution -0.400 1.220 -0.189 1.297 sum -3.445 8.036 21.488 23.199 Atomic orbital electron populations 1.22303 0.97794 0.99924 0.99956 1.18730 0.92560 0.92282 0.93755 1.22368 1.01294 0.98277 0.98540 1.20709 1.34117 1.12359 0.87949 0.90507 1.24973 0.94662 0.97306 0.95769 1.69946 1.48113 1.35923 0.98738 0.87296 0.79340 0.85563 0.76015 1.21338 1.23387 1.17490 1.21564 0.98746 0.95914 0.81780 1.46215 1.52784 1.31842 1.05872 1.17958 0.81178 0.84454 0.83117 1.90821 1.37776 1.25442 1.86631 1.19272 1.03937 0.97960 0.90579 1.21200 0.95330 0.93298 0.99966 1.20848 1.01168 1.01004 0.90583 1.20212 0.98124 0.92706 0.98966 1.19761 1.02300 0.96341 0.84196 1.19708 0.94872 0.87032 0.93515 1.87547 1.67022 1.38497 1.26327 1.25759 0.90056 0.95756 0.78924 1.87377 1.49149 1.56555 1.29475 0.95993 0.92456 0.93311 0.92709 0.93972 0.95241 0.92537 0.91767 0.91639 0.76894 0.84026 0.83806 0.84381 0.89663 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.15 0.28 -2.56 16 2 C 0.03 0.60 0.50 -155.67 -0.08 0.52 16 3 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 4 C -0.51 -13.70 8.62 -34.44 -0.30 -13.99 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 8 Si 0.89 20.78 22.79 -169.99 -3.87 16.90 16 9 H -0.29 -6.68 7.10 56.52 0.40 -6.28 16 10 H -0.31 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.25 -5.25 4.65 56.52 0.26 -4.99 16 12 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 13 N -0.72 -11.93 4.95 -61.34 -0.30 -12.24 16 14 C 0.55 9.65 7.76 -12.47 -0.10 9.56 16 15 O -0.53 -11.43 15.98 -8.32 -0.13 -11.57 16 16 C -0.11 -1.62 5.88 -104.88 -0.62 -2.24 16 17 C -0.08 -0.82 9.53 -39.17 -0.37 -1.20 16 18 C -0.12 -0.97 10.02 -39.65 -0.40 -1.37 16 19 C -0.08 -0.74 10.05 -39.40 -0.40 -1.13 16 20 C 0.02 0.22 7.14 -39.12 -0.28 -0.06 16 21 C 0.10 1.37 6.79 -38.56 -0.26 1.11 16 22 O -0.28 -4.16 10.57 -50.00 -0.53 -4.69 16 23 C 0.21 2.02 8.89 101.05 0.90 2.91 16 24 O -0.31 -3.49 11.41 -45.79 -0.52 -4.01 16 25 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 26 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 27 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 28 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 29 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 30 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.40 5.52 4.28 -40.82 -0.17 5.35 16 35 H 0.14 1.20 6.40 -52.49 -0.34 0.86 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -33.55 311.04 -6.00 -39.55 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.65 Total: 3.34 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.45 Total: -6.26 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.47 Total: -37.96 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.18 Total: -20.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -3.87 Total: 16.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.55 -6.00 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.039 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds