Wall clock time and date at job start Tue Mar 31 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.50694 * 109.47220 * 239.99880 * 2 1 3 5 5 H 1.08002 * 120.00508 * 241.34279 * 4 2 1 6 6 C 1.37881 * 119.99953 * 61.34647 * 4 2 1 7 7 N 1.31507 * 120.00225 * 193.97247 * 6 4 2 8 8 Si 1.86807 * 119.99723 * 13.97869 * 6 4 2 9 9 H 1.48497 * 109.47133 * 84.54839 * 8 6 4 10 10 H 1.48498 * 109.46792 * 204.54994 * 8 6 4 11 11 H 1.48504 * 109.47203 * 324.54534 * 8 6 4 12 12 C 1.53002 * 109.47165 * 120.00084 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99945 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21588 * 120.00560 * 359.72403 * 14 13 12 16 16 C 1.47546 * 120.00215 * 180.02562 * 14 13 12 17 17 C 1.39808 * 120.15442 * 359.72408 * 16 14 13 18 18 C 1.37747 * 119.98539 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.35661 * 0.02587 * 18 17 16 20 20 C 1.38442 * 120.37154 * 359.97438 * 19 18 17 21 21 C 1.39288 * 119.91620 * 359.74135 * 20 19 18 22 22 O 1.36204 * 108.71849 * 179.83035 * 21 20 19 23 23 C 1.43989 * 105.58302 * 343.08336 * 22 21 20 24 24 O 1.36531 * 131.49954 * 180.02562 * 20 19 18 25 25 H 1.09004 * 109.46900 * 309.36563 * 1 2 3 26 26 H 1.08996 * 109.47487 * 69.36892 * 1 2 3 27 27 H 1.09005 * 109.47042 * 189.36974 * 1 2 3 28 28 H 1.09009 * 109.47297 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47355 * 300.00165 * 3 2 1 30 30 H 1.09006 * 109.47187 * 60.00475 * 3 2 1 31 31 H 0.97000 * 120.00293 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.47297 * 180.02562 * 12 2 1 33 33 H 1.08995 * 109.47495 * 60.00221 * 12 2 1 34 34 H 0.96992 * 120.00304 * 359.97438 * 13 12 2 35 35 H 1.08002 * 120.00800 * 359.95106 * 17 16 14 36 36 H 1.08004 * 119.82663 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.81599 * 179.97438 * 19 18 17 38 38 H 1.08997 * 110.57124 * 268.33668 * 23 22 21 39 39 H 1.08995 * 110.70307 * 145.51717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9725 -3.5459 8 14 1.0275 1.5007 -2.6683 9 1 2.1416 2.4817 -2.7083 10 1 0.2469 1.5865 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5729 -1.4821 3.7811 16 6 1.3854 0.2043 4.8743 17 6 0.5853 1.3440 4.7498 18 6 0.1273 1.9900 5.8769 19 6 0.4553 1.5170 7.1370 20 6 1.2466 0.3897 7.2774 21 6 1.7122 -0.2774 6.1467 22 8 2.4640 -1.3409 6.5453 23 6 2.7872 -1.0904 7.9260 24 8 1.7015 -0.2639 8.3864 25 1 -0.3633 0.6518 0.7945 26 1 -0.3634 0.3621 -0.9617 27 1 -0.3633 -1.0140 0.1673 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6973 -0.6300 -4.4267 32 1 3.1301 -0.7209 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 0.9943 0.7582 2.3565 35 1 0.3268 1.7182 3.7702 36 1 -0.4903 2.8705 5.7778 37 1 0.0917 2.0305 8.0148 38 1 3.7350 -0.5583 8.0070 39 1 2.8235 -2.0232 8.4886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457985705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:58 Heat of formation + Delta-G solvation = -75.534995 kcal Electronic energy + Delta-G solvation = -23244.393196 eV Core-core repulsion = 19732.128697 eV Total energy + Delta-G solvation = -3512.264498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.25269 -40.95212 -38.73527 -38.25911 -37.27765 -35.07876 -33.55012 -31.92173 -30.99584 -28.02582 -27.71622 -26.98216 -26.82110 -24.79292 -23.82883 -21.80591 -21.00866 -19.41231 -19.04851 -18.42245 -18.09997 -17.80745 -17.20181 -16.71669 -16.50662 -16.36250 -15.60938 -15.30602 -15.04624 -14.96628 -14.71846 -14.62453 -14.33463 -14.00493 -13.97700 -13.73255 -13.72484 -13.16945 -12.94500 -12.69293 -12.38323 -12.16042 -11.94571 -11.92523 -11.75818 -11.13442 -10.96472 -10.61026 -10.37612 -10.20592 -9.86709 -9.16064 -8.28890 -6.31432 -0.32937 0.08930 1.38387 1.40508 1.53901 1.69417 1.83884 2.12810 2.36862 2.45271 2.66758 3.07180 3.36121 3.74412 3.76158 3.88722 4.05694 4.11159 4.18026 4.23239 4.31411 4.41653 4.44404 4.72996 4.81126 4.83857 4.88245 4.93079 4.97348 5.06842 5.16263 5.19725 5.26494 5.39199 5.44086 5.52046 5.72342 5.80948 6.03512 6.30367 6.56147 6.73082 7.20948 7.33516 8.88509 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.003743 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.425428 B = 7479.345230 C = 8120.320665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.198 1.198 12 C 0.157 3.843 13 N -0.700 5.700 14 C 0.546 3.454 15 O -0.582 6.582 16 C -0.141 4.141 17 C -0.073 4.073 18 C -0.099 4.099 19 C -0.067 4.067 20 C 0.005 3.995 21 C 0.062 3.938 22 O -0.320 6.320 23 C 0.200 3.800 24 O -0.316 6.316 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.265 0.735 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.413 0.587 35 H 0.167 0.833 36 H 0.191 0.809 37 H 0.172 0.828 38 H 0.103 0.897 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 12.171 24.399 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.559 4.559 5 H 0.042 0.958 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.245 1.245 11 H -0.121 1.121 12 C 0.033 3.967 13 N -0.353 5.353 14 C 0.334 3.666 15 O -0.464 6.464 16 C -0.145 4.145 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.086 4.086 20 C -0.039 4.039 21 C 0.016 3.984 22 O -0.236 6.236 23 C 0.090 3.910 24 O -0.232 6.232 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.252 0.748 35 H 0.184 0.816 36 H 0.208 0.792 37 H 0.189 0.811 38 H 0.120 0.880 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.661 11.228 24.404 27.453 hybrid contribution 0.465 -0.245 -0.918 1.058 sum -5.197 10.983 23.486 26.443 Atomic orbital electron populations 1.22234 0.95770 1.00717 1.01201 1.18659 0.94019 0.93271 0.91375 1.22307 1.01026 0.96538 1.00587 1.21028 1.33075 1.11095 0.90717 0.95798 1.25918 0.95335 1.01926 0.95057 1.70120 1.50679 1.38463 0.99460 0.86308 0.79508 0.79482 0.77181 1.20793 1.24532 1.12099 1.21088 0.97407 0.95041 0.83157 1.45877 1.52827 1.32040 1.04533 1.18578 0.80053 0.83804 0.84153 1.90789 1.40206 1.27964 1.87402 1.19173 1.06694 0.99963 0.88692 1.21546 0.93866 0.91588 1.02171 1.21390 0.99818 1.01349 0.89103 1.20797 0.95835 0.91101 1.00841 1.20099 1.03188 0.97247 0.83368 1.20090 0.96010 0.87696 0.94601 1.87481 1.67684 1.39701 1.28706 1.26156 0.90327 0.97220 0.77341 1.87341 1.49633 1.56805 1.29449 0.91062 0.93344 0.94281 0.93583 0.94387 0.90346 0.92661 0.93943 0.94256 0.74797 0.81556 0.79155 0.81063 0.87958 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 7.53 71.98 0.54 -4.68 16 2 C 0.03 1.17 0.50 -52.93 -0.03 1.15 16 3 C -0.15 -5.33 7.52 71.98 0.54 -4.79 16 4 C -0.52 -28.90 8.62 25.60 0.22 -28.68 16 5 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 6 C 0.01 0.84 5.32 84.66 0.45 1.29 16 7 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 8 Si 0.95 41.81 22.79 68.60 1.56 43.37 16 9 H -0.28 -12.13 7.10 99.48 0.71 -11.42 16 10 H -0.32 -14.45 7.11 99.48 0.71 -13.75 16 11 H -0.20 -7.14 4.65 99.48 0.46 -6.68 16 12 C 0.16 6.44 4.49 86.38 0.39 6.82 16 13 N -0.70 -22.26 4.95 -466.25 -2.31 -24.57 16 14 C 0.55 19.26 7.76 86.70 0.67 19.93 16 15 O -0.58 -26.49 15.98 9.02 0.14 -26.34 16 16 C -0.14 -3.82 5.88 -20.03 -0.12 -3.94 16 17 C -0.07 -1.19 9.53 22.53 0.21 -0.98 16 18 C -0.10 -1.04 10.02 22.22 0.22 -0.81 16 19 C -0.07 -0.90 10.05 22.39 0.22 -0.68 16 20 C 0.01 0.11 7.14 22.57 0.16 0.27 16 21 C 0.06 1.77 6.79 22.93 0.16 1.92 16 22 O -0.32 -9.85 10.57 -67.57 -0.71 -10.56 16 23 C 0.20 3.83 8.89 113.37 1.01 4.84 16 24 O -0.32 -6.67 11.41 -76.41 -0.87 -7.54 16 25 H 0.07 1.92 7.13 -2.38 -0.02 1.90 16 26 H 0.05 1.87 4.30 -2.39 -0.01 1.86 16 27 H 0.04 1.49 8.12 -2.38 -0.02 1.47 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.04 1.42 2.25 -2.39 -0.01 1.41 16 30 H 0.08 2.06 6.86 -2.38 -0.02 2.04 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 9.76 4.28 -92.71 -0.40 9.36 16 35 H 0.17 1.76 6.40 -2.91 -0.02 1.74 16 36 H 0.19 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -81.49 311.04 3.22 -78.27 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.45 Total: 14.43 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 4.66 Total: -8.33 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.01 Total: -83.29 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.44 Total: -44.44 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.56 Total: 43.37 kcal Total: -81.49 3.22 -78.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.731 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds