Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46983 * 2 1 4 4 C 1.37723 * 119.95459 * 100.29884 * 3 2 1 5 5 C 1.39711 * 119.90850 * 180.24827 * 4 3 2 6 6 C 1.47606 * 120.08883 * 179.71895 * 5 4 3 7 7 O 1.21583 * 119.99803 * 352.82433 * 6 5 4 8 8 N 1.34771 * 119.99972 * 172.81402 * 6 5 4 9 9 C 1.47582 * 134.49079 * 174.43700 * 8 6 5 10 10 C 1.53944 * 86.11552 * 155.36465 * 9 8 6 11 11 O 1.42905 * 113.74459 * 269.15875 * 10 9 8 12 12 C 1.50701 * 113.74391 * 137.95627 * 10 9 8 13 13 H 1.07995 * 119.99851 * 1.92386 * 12 10 9 14 14 C 1.37874 * 120.00284 * 181.92256 * 12 10 9 15 15 N 1.31516 * 120.00083 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00225 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47426 * 270.00660 * 16 14 12 18 18 H 1.48504 * 109.47119 * 30.00508 * 16 14 12 19 19 H 1.48503 * 109.47284 * 150.00345 * 16 14 12 20 20 C 1.47810 * 134.45975 * 354.31392 * 8 6 5 21 21 C 1.39757 * 119.82476 * 359.45874 * 5 4 3 22 22 C 1.37682 * 119.91040 * 0.26536 * 21 5 4 23 23 C 1.38970 * 119.95413 * 280.00475 * 3 2 1 24 24 O 1.35712 * 119.91608 * 359.97438 * 23 3 2 25 25 H 1.08996 * 109.47428 * 60.00356 * 1 2 3 26 26 H 1.09006 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47325 * 299.99869 * 1 2 3 28 28 H 1.09004 * 109.46823 * 240.00259 * 2 1 3 29 29 H 1.08997 * 109.46900 * 120.00428 * 2 1 3 30 30 H 1.07999 * 120.04399 * 359.97438 * 4 3 2 31 31 H 1.09002 * 113.76891 * 41.06866 * 9 8 6 32 32 H 1.08996 * 113.87587 * 269.67910 * 9 8 6 33 33 H 0.96694 * 114.00368 * 178.07593 * 11 10 9 34 34 H 0.96994 * 120.00487 * 179.97438 * 15 14 12 35 35 H 1.09003 * 113.77303 * 90.37118 * 20 8 6 36 36 H 1.09003 * 113.83252 * 318.91555 * 20 8 6 37 37 H 1.07999 * 120.04310 * 180.25302 * 21 5 4 38 38 H 1.08001 * 119.95372 * 179.97438 * 22 21 5 39 39 H 0.96700 * 114.00389 * 270.03011 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4627 1.9981 1.1740 5 6 2.9233 3.3171 1.1739 6 6 3.3796 3.9417 2.4310 7 8 3.2344 3.3579 3.4875 8 7 3.9574 5.1591 2.4076 9 6 4.4240 6.1025 3.4421 10 6 5.3747 6.6522 2.3633 11 8 6.6524 6.0124 2.3422 12 6 5.4705 8.1561 2.3481 13 1 4.9241 8.7393 3.0744 14 6 6.2556 8.7874 1.4068 15 7 6.9206 8.0772 0.5219 16 14 6.3737 10.6515 1.3875 17 1 5.3112 11.2058 0.5106 18 1 6.1990 11.1729 2.7670 19 1 7.7049 11.0579 0.8697 20 6 4.3801 6.0839 1.3349 21 6 2.9560 4.0418 -0.0207 22 6 2.5293 3.4556 -1.1912 23 6 2.0664 2.1448 -1.1858 24 8 1.6476 1.5703 -2.3418 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.4399 1.4333 2.0943 31 1 4.9364 5.6222 4.2758 32 1 3.6650 6.8156 3.7635 33 1 7.2422 6.3346 1.6469 34 1 7.4726 8.5213 -0.1405 35 1 3.6069 6.7910 1.0344 36 1 4.8574 5.5888 0.4892 37 1 3.3152 5.0602 -0.0256 38 1 2.5539 4.0151 -2.1146 39 1 2.3464 1.1137 -2.8299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487449612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -68.319976 kcal Electronic energy + Delta-G solvation = -23113.910518 eV Core-core repulsion = 19601.958886 eV Total energy + Delta-G solvation = -3511.951632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31933 -39.26660 -37.47034 -36.31245 -34.30541 -33.88118 -32.26265 -30.32534 -29.71969 -28.14248 -25.56766 -25.44895 -23.93866 -22.87490 -21.55840 -19.97009 -18.65533 -18.40541 -17.47226 -16.56269 -16.17033 -15.74147 -15.23318 -15.06754 -14.67464 -14.37825 -14.14638 -13.80723 -13.70062 -13.38725 -13.00568 -12.76741 -12.64184 -12.20806 -12.07642 -11.94766 -11.66178 -11.62500 -11.56470 -11.15914 -11.07698 -11.01604 -10.56771 -10.36300 -10.31242 -9.68948 -9.28237 -8.86755 -8.81435 -8.56457 -8.41992 -7.87304 -6.43269 -4.53691 0.88634 1.36154 3.07584 3.12051 3.20762 3.23987 3.47334 3.94754 4.14351 4.16315 4.63484 4.75375 4.80954 4.91171 5.11857 5.26020 5.31167 5.40751 5.48730 5.54596 5.73799 5.77736 5.85490 5.89941 5.99396 6.11894 6.16196 6.25175 6.34263 6.39209 6.43535 6.45176 6.58284 6.64001 6.79083 7.04499 7.52968 7.58988 7.77568 8.39911 8.49888 8.70176 9.17691 9.38515 10.63445 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.003905 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.509545 B = 7167.779884 C = 7867.337501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.048 4.048 5 C -0.125 4.125 6 C 0.570 3.430 7 O -0.562 6.562 8 N -0.626 5.626 9 C 0.113 3.887 10 C 0.240 3.760 11 O -0.571 6.571 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.908 3.092 17 H -0.277 1.277 18 H -0.271 1.271 19 H -0.283 1.283 20 C 0.070 3.930 21 C -0.083 4.083 22 C -0.151 4.151 23 C 0.123 3.877 24 O -0.495 6.495 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.392 0.608 34 H 0.273 0.727 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.149 0.851 38 H 0.133 0.867 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 -9.902 -6.373 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.123 4.123 4 C -0.067 4.067 5 C -0.128 4.128 6 C 0.360 3.640 7 O -0.443 6.443 8 N -0.358 5.358 9 C -0.009 4.009 10 C 0.198 3.802 11 O -0.383 6.383 12 C -0.576 4.576 13 H 0.090 0.910 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.195 1.195 19 H -0.209 1.209 20 C -0.052 4.052 21 C -0.101 4.101 22 C -0.169 4.169 23 C 0.078 3.922 24 O -0.306 6.306 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.246 0.754 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.470 -10.460 -5.307 14.468 hybrid contribution 0.734 1.148 -0.937 1.654 sum -7.736 -9.312 -6.244 13.621 Atomic orbital electron populations 1.21730 0.94597 1.01466 1.02469 1.20363 0.96414 0.91822 1.02535 1.20111 1.02098 0.97193 0.92924 1.21040 0.94597 0.93460 0.97640 1.20072 1.03597 0.95263 0.93891 1.17806 0.77250 0.80714 0.88224 1.90705 1.58276 1.63015 1.32318 1.50089 1.57761 1.15119 1.12851 1.23479 0.95280 0.88337 0.93821 1.19845 0.81428 0.90489 0.88413 1.86074 1.26433 1.65947 1.59838 1.21503 1.29462 0.90458 1.16185 0.90980 1.25066 0.94082 0.99616 0.94233 1.69396 1.30001 1.36349 1.18021 0.86334 0.77654 0.83885 0.78676 1.20303 1.19531 1.20905 1.24494 0.98059 0.88913 0.93736 1.21962 0.95756 1.01316 0.91096 1.21373 1.01046 0.95251 0.99267 1.18484 0.96621 0.91535 0.85575 1.84750 1.38524 1.73290 1.33990 0.92061 0.92612 0.92684 0.91134 0.91048 0.84544 0.90925 0.89386 0.75361 0.91656 0.89643 0.90644 0.83357 0.84921 0.75554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.07 -0.76 5.72 -27.88 -0.16 -0.92 16 3 C -0.12 -1.61 5.14 -104.54 -0.54 -2.14 16 4 C -0.05 -0.75 9.20 -39.22 -0.36 -1.11 16 5 C -0.13 -2.22 5.88 -104.96 -0.62 -2.84 16 6 C 0.57 12.05 7.98 -12.44 -0.10 11.95 16 7 O -0.56 -13.24 17.10 5.29 0.09 -13.15 16 8 N -0.63 -13.28 3.60 -179.33 -0.65 -13.92 16 9 C 0.11 2.43 8.23 -2.97 -0.02 2.41 16 10 C 0.24 5.61 1.40 -90.85 -0.13 5.48 16 11 O -0.57 -14.44 13.48 -35.23 -0.48 -14.91 16 12 C -0.54 -13.12 8.61 -34.44 -0.30 -13.42 16 13 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 15 N -0.90 -22.03 11.20 55.43 0.62 -21.41 16 16 Si 0.91 19.00 29.54 -169.99 -5.02 13.98 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.07 1.46 5.60 -2.84 -0.02 1.44 16 21 C -0.08 -1.32 9.07 -39.22 -0.36 -1.67 16 22 C -0.15 -2.05 9.97 -39.50 -0.39 -2.44 16 23 C 0.12 1.56 6.68 -39.02 -0.26 1.30 16 24 O -0.50 -5.13 12.61 -18.84 -0.24 -5.37 16 25 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 29 H 0.07 0.69 7.99 -51.93 -0.42 0.28 16 30 H 0.14 2.10 7.63 -52.49 -0.40 1.70 16 31 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.73 8.09 -51.93 -0.42 1.30 16 33 H 0.39 9.92 6.60 45.56 0.30 10.22 16 34 H 0.27 6.39 8.31 -40.82 -0.34 6.06 16 35 H 0.09 1.67 7.99 -51.93 -0.42 1.26 16 36 H 0.08 1.55 6.90 -51.93 -0.36 1.19 16 37 H 0.15 2.40 4.08 -52.49 -0.21 2.18 16 38 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.39 2.24 9.06 45.56 0.41 2.65 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -29.05 330.45 -7.24 -36.29 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -3.57 Total: 14.87 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.98 Total: -1.36 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.02 Total: -35.33 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.62 Total: -33.43 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.05 -7.24 -36.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487449612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.031 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds