Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46983 * 2 1 4 4 C 1.37723 * 119.95459 * 100.29884 * 3 2 1 5 5 C 1.39711 * 119.90850 * 180.24827 * 4 3 2 6 6 C 1.47606 * 120.08883 * 179.71895 * 5 4 3 7 7 O 1.21583 * 119.99803 * 352.82433 * 6 5 4 8 8 N 1.34771 * 119.99972 * 172.81402 * 6 5 4 9 9 C 1.47582 * 134.49079 * 174.43700 * 8 6 5 10 10 C 1.53944 * 86.11552 * 155.36465 * 9 8 6 11 11 O 1.42905 * 113.74459 * 269.15875 * 10 9 8 12 12 C 1.50701 * 113.74391 * 137.95627 * 10 9 8 13 13 H 1.07995 * 119.99851 * 1.92386 * 12 10 9 14 14 C 1.37874 * 120.00284 * 181.92256 * 12 10 9 15 15 N 1.31516 * 120.00083 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00225 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47426 * 270.00660 * 16 14 12 18 18 H 1.48504 * 109.47119 * 30.00508 * 16 14 12 19 19 H 1.48503 * 109.47284 * 150.00345 * 16 14 12 20 20 C 1.47810 * 134.45975 * 354.31392 * 8 6 5 21 21 C 1.39757 * 119.82476 * 359.45874 * 5 4 3 22 22 C 1.37682 * 119.91040 * 0.26536 * 21 5 4 23 23 C 1.38970 * 119.95413 * 280.00475 * 3 2 1 24 24 O 1.35712 * 119.91608 * 359.97438 * 23 3 2 25 25 H 1.08996 * 109.47428 * 60.00356 * 1 2 3 26 26 H 1.09006 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47325 * 299.99869 * 1 2 3 28 28 H 1.09004 * 109.46823 * 240.00259 * 2 1 3 29 29 H 1.08997 * 109.46900 * 120.00428 * 2 1 3 30 30 H 1.07999 * 120.04399 * 359.97438 * 4 3 2 31 31 H 1.09002 * 113.76891 * 41.06866 * 9 8 6 32 32 H 1.08996 * 113.87587 * 269.67910 * 9 8 6 33 33 H 0.96694 * 114.00368 * 178.07593 * 11 10 9 34 34 H 0.96994 * 120.00487 * 179.97438 * 15 14 12 35 35 H 1.09003 * 113.77303 * 90.37118 * 20 8 6 36 36 H 1.09003 * 113.83252 * 318.91555 * 20 8 6 37 37 H 1.07999 * 120.04310 * 180.25302 * 21 5 4 38 38 H 1.08001 * 119.95372 * 179.97438 * 22 21 5 39 39 H 0.96700 * 114.00389 * 270.03011 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4627 1.9981 1.1740 5 6 2.9233 3.3171 1.1739 6 6 3.3796 3.9417 2.4310 7 8 3.2344 3.3579 3.4875 8 7 3.9574 5.1591 2.4076 9 6 4.4240 6.1025 3.4421 10 6 5.3747 6.6522 2.3633 11 8 6.6524 6.0124 2.3422 12 6 5.4705 8.1561 2.3481 13 1 4.9241 8.7393 3.0744 14 6 6.2556 8.7874 1.4068 15 7 6.9206 8.0772 0.5219 16 14 6.3737 10.6515 1.3875 17 1 5.3112 11.2058 0.5106 18 1 6.1990 11.1729 2.7670 19 1 7.7049 11.0579 0.8697 20 6 4.3801 6.0839 1.3349 21 6 2.9560 4.0418 -0.0207 22 6 2.5293 3.4556 -1.1912 23 6 2.0664 2.1448 -1.1858 24 8 1.6476 1.5703 -2.3418 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.4399 1.4333 2.0943 31 1 4.9364 5.6222 4.2758 32 1 3.6650 6.8156 3.7635 33 1 7.2422 6.3346 1.6469 34 1 7.4726 8.5213 -0.1405 35 1 3.6069 6.7910 1.0344 36 1 4.8574 5.5888 0.4892 37 1 3.3152 5.0602 -0.0256 38 1 2.5539 4.0151 -2.1146 39 1 2.3464 1.1137 -2.8299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487449612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -89.250471 kcal Electronic energy + Delta-G solvation = -23114.818132 eV Core-core repulsion = 19601.958886 eV Total energy + Delta-G solvation = -3512.859246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68684 -40.63559 -39.08336 -37.43021 -35.91450 -35.07535 -34.15533 -31.59018 -30.91937 -29.63045 -27.24985 -27.16101 -24.93017 -24.14711 -22.69734 -21.54383 -20.22154 -19.41576 -19.27088 -18.02178 -17.65023 -17.01891 -16.78558 -16.38831 -16.28420 -15.93369 -15.43958 -15.07347 -14.72876 -14.59850 -14.48115 -14.20333 -14.14482 -13.74731 -13.42859 -13.36138 -13.14801 -12.81282 -12.72714 -12.71848 -12.46853 -12.25207 -12.21886 -11.88278 -11.44545 -11.30644 -11.03569 -10.65702 -10.24024 -9.98640 -9.76970 -9.50586 -8.26514 -6.43445 -0.31111 0.24634 1.47282 1.51358 1.59874 1.70116 1.86053 2.41194 2.67197 2.96027 3.15575 3.38704 3.65040 3.75701 3.81473 4.07537 4.14991 4.23726 4.35001 4.45068 4.49339 4.52915 4.56878 4.71803 4.75890 4.81587 4.87149 4.99979 5.04530 5.06539 5.18958 5.20702 5.31577 5.36989 5.44563 5.70747 5.72580 5.92011 6.62166 6.73848 6.79995 7.04935 7.29928 7.43476 8.79658 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.003905 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.509545 B = 7167.779884 C = 7867.337501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.055 4.055 5 C -0.155 4.155 6 C 0.563 3.437 7 O -0.597 6.597 8 N -0.629 5.629 9 C 0.110 3.890 10 C 0.221 3.779 11 O -0.586 6.586 12 C -0.557 4.557 13 H 0.072 0.928 14 C 0.036 3.964 15 N -0.914 5.914 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.284 1.284 20 C 0.089 3.911 21 C -0.088 4.088 22 C -0.151 4.151 23 C 0.143 3.857 24 O -0.493 6.493 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.388 0.612 34 H 0.276 0.724 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -10.382 -8.483 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.121 4.121 4 C -0.074 4.074 5 C -0.158 4.158 6 C 0.356 3.644 7 O -0.481 6.481 8 N -0.361 5.361 9 C -0.012 4.012 10 C 0.180 3.820 11 O -0.398 6.398 12 C -0.595 4.595 13 H 0.091 0.909 14 C -0.165 4.165 15 N -0.554 5.554 16 Si 0.793 3.207 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.209 1.209 20 C -0.033 4.033 21 C -0.106 4.106 22 C -0.169 4.169 23 C 0.097 3.903 24 O -0.307 6.307 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.242 0.758 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.478 -10.953 -7.442 16.284 hybrid contribution 1.028 1.199 -0.357 1.619 sum -8.450 -9.755 -7.799 15.079 Atomic orbital electron populations 1.21707 0.94153 1.02568 1.01553 1.20469 0.96648 0.90068 1.03945 1.20381 1.01046 0.98562 0.92074 1.21072 0.95025 0.92739 0.98543 1.19899 1.06484 0.96487 0.92893 1.18430 0.76505 0.80281 0.89226 1.90663 1.59831 1.63723 1.33901 1.50115 1.57928 1.15376 1.12681 1.23519 0.95506 0.88813 0.93320 1.20116 0.81171 0.90497 0.90249 1.86061 1.27472 1.66369 1.59898 1.21702 1.30154 0.91016 1.16619 0.90936 1.25711 0.93687 1.03267 0.93855 1.69457 1.30105 1.37630 1.18231 0.85401 0.77533 0.79332 0.78436 1.19594 1.19708 1.20944 1.24302 0.97415 0.88611 0.92980 1.21880 0.96403 1.01003 0.91348 1.21596 1.00326 0.95822 0.99144 1.18485 0.94342 0.91137 0.86308 1.84696 1.39606 1.73333 1.33026 0.92639 0.90562 0.93902 0.88860 0.90569 0.85232 0.92184 0.87518 0.75789 0.91410 0.88372 0.90651 0.84090 0.82601 0.72574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.07 -1.32 5.72 29.85 0.17 -1.15 16 3 C -0.12 -2.90 5.14 -19.81 -0.10 -3.00 16 4 C -0.05 -1.69 9.20 22.50 0.21 -1.48 16 5 C -0.15 -5.53 5.88 -20.08 -0.12 -5.65 16 6 C 0.56 24.52 7.98 86.72 0.69 25.21 16 7 O -0.60 -29.22 17.10 -3.98 -0.07 -29.29 16 8 N -0.63 -27.27 3.60 -843.38 -3.03 -30.31 16 9 C 0.11 4.88 8.23 86.48 0.71 5.59 16 10 C 0.22 10.48 1.40 -10.88 -0.02 10.46 16 11 O -0.59 -30.37 13.48 -148.98 -2.01 -32.38 16 12 C -0.56 -27.19 8.61 25.60 0.22 -26.97 16 13 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 14 C 0.04 1.72 5.39 84.65 0.46 2.17 16 15 N -0.91 -44.67 11.20 21.45 0.24 -44.43 16 16 Si 0.97 38.43 29.54 68.60 2.03 40.46 16 17 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 20 C 0.09 3.71 5.60 86.44 0.48 4.20 16 21 C -0.09 -2.73 9.07 22.51 0.20 -2.53 16 22 C -0.15 -3.73 9.97 22.33 0.22 -3.51 16 23 C 0.14 3.21 6.68 22.63 0.15 3.36 16 24 O -0.49 -8.14 12.61 -90.33 -1.14 -9.28 16 25 H 0.05 1.02 8.04 -2.39 -0.02 1.00 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.26 7.85 -2.38 -0.02 1.24 16 29 H 0.08 1.31 7.99 -2.39 -0.02 1.29 16 30 H 0.13 4.09 7.63 -2.91 -0.02 4.07 16 31 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.11 4.23 8.09 -2.39 -0.02 4.21 16 33 H 0.39 20.13 6.60 -74.06 -0.49 19.64 16 34 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 35 H 0.10 3.81 7.99 -2.39 -0.02 3.79 16 36 H 0.08 3.13 6.90 -2.39 -0.02 3.11 16 37 H 0.14 4.51 4.08 -2.91 -0.01 4.50 16 38 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.41 2.80 9.06 -74.06 -0.67 2.13 16 Total: -1.00 -62.51 330.45 -0.05 -62.56 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.06 Total: 37.71 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 4.00 Total: 4.96 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -2.79 Total: -74.74 kcal Atomic # 8 Polarization: -67.73 SS G_CDS: -3.22 Total: -70.94 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -62.51 -0.05 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487449612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.692 kcal (2) G-P(sol) polarization free energy of solvation -62.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds