Wall clock time and date at job start Tue Mar 31 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35658 * 116.99751 * 2 1 4 4 C 1.38708 * 120.14971 * 359.97438 * 3 2 1 5 5 C 1.38057 * 120.08007 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.79891 * 179.97438 * 5 4 3 7 7 C 1.38544 * 120.39772 * 359.97438 * 5 4 3 8 8 C 1.37798 * 120.29365 * 359.69949 * 7 5 4 9 9 C 1.39708 * 119.90866 * 0.57757 * 8 7 5 10 10 C 1.47532 * 120.18858 * 179.72261 * 9 8 7 11 11 O 1.21585 * 119.99516 * 155.29021 * 10 9 8 12 12 N 1.34770 * 120.00402 * 335.28549 * 10 9 8 13 13 C 1.47579 * 134.49752 * 174.67055 * 12 10 9 14 14 C 1.53942 * 86.11966 * 155.36232 * 13 12 10 15 15 O 1.42902 * 113.73948 * 269.15132 * 14 13 12 16 16 C 1.50696 * 113.74086 * 137.95538 * 14 13 12 17 17 H 1.07995 * 120.00303 * 1.92344 * 16 14 13 18 18 C 1.37878 * 119.99793 * 181.92405 * 16 14 13 19 19 N 1.31515 * 119.99963 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99934 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47144 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47589 * 299.99938 * 20 18 16 23 23 H 1.48507 * 109.47241 * 60.00103 * 20 18 16 24 24 C 1.47822 * 134.45328 * 354.54250 * 12 10 9 25 25 H 1.09000 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47236 * 299.99415 * 1 2 3 27 27 H 1.08995 * 109.47280 * 59.99630 * 1 2 3 28 28 H 1.08002 * 119.95937 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47371 * 89.99571 * 6 5 4 30 30 H 1.09003 * 109.46858 * 209.99517 * 6 5 4 31 31 H 1.09000 * 109.47382 * 329.99036 * 6 5 4 32 32 H 1.07990 * 119.85709 * 180.02562 * 7 5 4 33 33 H 1.07999 * 120.04367 * 180.30145 * 8 7 5 34 34 H 1.09002 * 113.76717 * 41.05434 * 13 12 10 35 35 H 1.09001 * 113.76936 * 269.66371 * 13 12 10 36 36 H 0.96698 * 114.00155 * 178.06991 * 15 14 13 37 37 H 0.97003 * 119.99949 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.77054 * 90.37921 * 24 12 10 39 39 H 1.08996 * 113.83646 * 318.90767 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9206 3.6034 -0.0011 6 6 1.0968 4.8653 -0.0022 7 6 3.3037 3.6838 -0.0005 8 6 4.0667 2.5364 0.0068 9 6 3.4441 1.2858 0.0015 10 6 4.2551 0.0533 0.0031 11 8 3.7880 -0.9811 0.4391 12 7 5.5135 0.0740 -0.4788 13 6 6.6132 -0.9081 -0.5420 14 6 7.1268 -0.0991 -1.7468 15 8 6.6213 -0.5549 -3.0033 16 6 8.6206 0.0998 -1.7518 17 1 9.2262 -0.3379 -0.9721 18 6 9.2141 0.8405 -2.7518 19 7 8.4766 1.3731 -3.7016 20 14 11.0656 1.0876 -2.7576 21 1 11.4510 1.9143 -3.9295 22 1 11.4770 1.7770 -1.5083 23 1 11.7410 -0.2324 -2.8400 24 6 6.3452 1.0896 -1.1586 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2137 2.3195 -0.0005 29 1 0.8977 5.1703 1.0251 30 1 1.6438 5.6557 -0.5163 31 1 0.1532 4.6829 -0.5165 32 1 3.7860 4.6501 -0.0005 33 1 5.1446 2.6039 0.0121 34 1 6.2874 -1.9166 -0.7966 35 1 7.2777 -0.8797 0.3216 36 1 6.9181 -0.0311 -3.7600 37 1 8.8942 1.8940 -4.4053 38 1 6.9308 1.7061 -0.4766 39 1 5.8058 1.6731 -1.9047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526012565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:07 Heat of formation + Delta-G solvation = -58.368753 kcal Electronic energy + Delta-G solvation = -23400.438979 eV Core-core repulsion = 19888.918864 eV Total energy + Delta-G solvation = -3511.520114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38715 -39.08807 -37.49597 -36.98333 -33.89475 -32.74217 -32.18724 -30.12087 -28.82097 -27.87141 -26.72136 -25.28502 -25.01975 -22.29003 -21.86986 -20.09022 -18.77221 -17.51653 -17.22106 -16.47852 -16.27307 -15.73070 -15.34066 -15.03001 -14.46625 -14.30695 -14.17615 -13.93400 -13.74625 -13.71620 -13.07000 -12.62847 -12.37462 -12.28046 -12.17679 -11.98660 -11.80796 -11.55434 -11.38889 -11.12467 -11.01588 -10.98271 -10.87993 -10.50966 -10.25764 -9.55018 -9.11784 -8.79428 -8.73050 -8.34658 -8.10445 -7.70758 -6.36229 -4.46774 1.06803 1.49876 3.17844 3.23747 3.25843 3.29146 3.35528 3.61697 4.08398 4.20889 4.63398 4.80415 4.87388 4.98269 5.04723 5.12702 5.15680 5.28438 5.43061 5.46099 5.52870 5.61637 5.65197 5.70022 5.97344 6.01331 6.17186 6.29406 6.37399 6.45179 6.53042 6.55453 6.71362 6.76506 6.81391 7.13907 7.48576 7.65499 7.85930 8.56073 8.57310 8.91568 9.24412 9.47434 10.70303 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.004424 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.079271 B = 6327.782570 C = 7168.132997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.285 6.285 3 C 0.181 3.819 4 C -0.225 4.225 5 C -0.032 4.032 6 C -0.116 4.116 7 C -0.168 4.168 8 C -0.042 4.042 9 C -0.159 4.159 10 C 0.574 3.426 11 O -0.546 6.546 12 N -0.631 5.631 13 C 0.114 3.886 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.538 4.538 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.076 3.924 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.391 0.609 37 H 0.273 0.727 38 H 0.081 0.919 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 7.345 5.501 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.196 6.196 3 C 0.133 3.867 4 C -0.243 4.243 5 C -0.032 4.032 6 C -0.172 4.172 7 C -0.186 4.186 8 C -0.061 4.061 9 C -0.163 4.163 10 C 0.364 3.636 11 O -0.426 6.426 12 N -0.364 5.364 13 C -0.008 4.008 14 C 0.197 3.803 15 O -0.383 6.383 16 C -0.576 4.576 17 H 0.089 0.911 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.046 4.046 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.917 6.249 5.996 15.552 hybrid contribution 0.944 0.926 -0.416 1.386 sum -11.973 7.175 5.580 15.032 Atomic orbital electron populations 1.23100 0.79143 1.04007 1.00902 1.86351 1.20458 1.25745 1.87012 1.19001 0.90953 0.84598 0.92179 1.20993 0.99784 0.91513 1.12058 1.19811 0.94020 0.94441 0.94945 1.20842 0.99298 0.94649 1.02451 1.20868 0.92935 0.98528 1.06301 1.21472 1.00806 0.90517 0.93283 1.19422 0.90618 0.94608 1.11623 1.17595 0.80651 0.87557 0.77773 1.90731 1.71057 1.32459 1.48347 1.50087 1.10366 1.18531 1.57441 1.23431 0.84780 0.94504 0.98115 1.19842 0.90965 0.87438 0.82011 1.86075 1.75093 1.59741 1.17393 1.21478 0.91495 1.33273 1.11350 0.91100 1.25061 0.99274 0.93957 0.94674 1.69404 1.36183 1.34605 1.13587 0.86410 0.84026 0.78463 0.77730 1.21042 1.19911 1.19876 1.24371 0.90459 0.95381 0.94411 0.88206 0.92818 0.92825 0.85182 0.90870 0.91081 0.91528 0.85434 0.84209 0.91110 0.89629 0.75463 0.91670 0.90081 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.28 -5.01 8.86 -38.92 -0.34 -5.35 16 3 C 0.18 3.11 6.67 -38.69 -0.26 2.85 16 4 C -0.22 -3.02 8.67 -39.47 -0.34 -3.36 16 5 C -0.03 -0.39 5.88 -104.57 -0.62 -1.01 16 6 C -0.12 -0.98 10.00 36.01 0.36 -0.62 16 7 C -0.17 -2.26 9.67 -39.63 -0.38 -2.64 16 8 C -0.04 -0.69 8.82 -39.19 -0.35 -1.04 16 9 C -0.16 -3.05 5.83 -104.85 -0.61 -3.66 16 10 C 0.57 13.03 7.76 -12.47 -0.10 12.93 16 11 O -0.55 -13.85 16.29 -14.95 -0.24 -14.09 16 12 N -0.63 -14.11 3.58 -179.34 -0.64 -14.75 16 13 C 0.11 2.56 8.23 -2.97 -0.02 2.54 16 14 C 0.24 5.82 1.40 -90.85 -0.13 5.69 16 15 O -0.57 -15.04 13.48 -35.23 -0.48 -15.52 16 16 C -0.54 -13.49 8.61 -34.44 -0.30 -13.79 16 17 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 19 N -0.90 -22.68 11.20 55.43 0.62 -22.06 16 20 Si 0.91 19.37 29.54 -169.99 -5.02 14.34 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C 0.08 1.66 5.69 -2.83 -0.02 1.65 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.14 2.24 5.54 -52.49 -0.29 1.95 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 36 H 0.39 10.28 6.60 45.56 0.30 10.58 16 37 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.08 1.64 7.70 -51.93 -0.40 1.24 16 39 H 0.07 1.55 7.86 -51.93 -0.41 1.14 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -30.96 328.91 -7.43 -38.39 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.42 Total: 11.56 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.86 Total: 2.52 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.02 Total: -36.81 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.06 Total: -34.96 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.96 -7.43 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526012565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.979 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds