Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35658 * 116.99751 * 2 1 4 4 C 1.38708 * 120.14971 * 359.97438 * 3 2 1 5 5 C 1.38057 * 120.08007 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.79891 * 179.97438 * 5 4 3 7 7 C 1.38544 * 120.39772 * 359.97438 * 5 4 3 8 8 C 1.37798 * 120.29365 * 359.69949 * 7 5 4 9 9 C 1.39708 * 119.90866 * 0.57757 * 8 7 5 10 10 C 1.47532 * 120.18858 * 179.72261 * 9 8 7 11 11 O 1.21585 * 119.99516 * 155.29021 * 10 9 8 12 12 N 1.34770 * 120.00402 * 335.28549 * 10 9 8 13 13 C 1.47579 * 134.49752 * 174.67055 * 12 10 9 14 14 C 1.53942 * 86.11966 * 155.36232 * 13 12 10 15 15 O 1.42902 * 113.73948 * 269.15132 * 14 13 12 16 16 C 1.50696 * 113.74086 * 137.95538 * 14 13 12 17 17 H 1.07995 * 120.00303 * 1.92344 * 16 14 13 18 18 C 1.37878 * 119.99793 * 181.92405 * 16 14 13 19 19 N 1.31515 * 119.99963 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99934 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47144 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47589 * 299.99938 * 20 18 16 23 23 H 1.48507 * 109.47241 * 60.00103 * 20 18 16 24 24 C 1.47822 * 134.45328 * 354.54250 * 12 10 9 25 25 H 1.09000 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47236 * 299.99415 * 1 2 3 27 27 H 1.08995 * 109.47280 * 59.99630 * 1 2 3 28 28 H 1.08002 * 119.95937 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47371 * 89.99571 * 6 5 4 30 30 H 1.09003 * 109.46858 * 209.99517 * 6 5 4 31 31 H 1.09000 * 109.47382 * 329.99036 * 6 5 4 32 32 H 1.07990 * 119.85709 * 180.02562 * 7 5 4 33 33 H 1.07999 * 120.04367 * 180.30145 * 8 7 5 34 34 H 1.09002 * 113.76717 * 41.05434 * 13 12 10 35 35 H 1.09001 * 113.76936 * 269.66371 * 13 12 10 36 36 H 0.96698 * 114.00155 * 178.06991 * 15 14 13 37 37 H 0.97003 * 119.99949 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.77054 * 90.37921 * 24 12 10 39 39 H 1.08996 * 113.83646 * 318.90767 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9206 3.6034 -0.0011 6 6 1.0968 4.8653 -0.0022 7 6 3.3037 3.6838 -0.0005 8 6 4.0667 2.5364 0.0068 9 6 3.4441 1.2858 0.0015 10 6 4.2551 0.0533 0.0031 11 8 3.7880 -0.9811 0.4391 12 7 5.5135 0.0740 -0.4788 13 6 6.6132 -0.9081 -0.5420 14 6 7.1268 -0.0991 -1.7468 15 8 6.6213 -0.5549 -3.0033 16 6 8.6206 0.0998 -1.7518 17 1 9.2262 -0.3379 -0.9721 18 6 9.2141 0.8405 -2.7518 19 7 8.4766 1.3731 -3.7016 20 14 11.0656 1.0876 -2.7576 21 1 11.4510 1.9143 -3.9295 22 1 11.4770 1.7770 -1.5083 23 1 11.7410 -0.2324 -2.8400 24 6 6.3452 1.0896 -1.1586 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2137 2.3195 -0.0005 29 1 0.8977 5.1703 1.0251 30 1 1.6438 5.6557 -0.5163 31 1 0.1532 4.6829 -0.5165 32 1 3.7860 4.6501 -0.0005 33 1 5.1446 2.6039 0.0121 34 1 6.2874 -1.9166 -0.7966 35 1 7.2777 -0.8797 0.3216 36 1 6.9181 -0.0311 -3.7600 37 1 8.8942 1.8940 -4.4053 38 1 6.9308 1.7061 -0.4766 39 1 5.8058 1.6731 -1.9047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526012565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -79.158610 kcal Electronic energy + Delta-G solvation = -23401.340494 eV Core-core repulsion = 19888.918864 eV Total energy + Delta-G solvation = -3512.421630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.72607 -40.68706 -38.82727 -38.55345 -35.82348 -34.15284 -33.86514 -31.23156 -30.47698 -28.84139 -28.01507 -27.08704 -26.63076 -23.48502 -23.04201 -21.72899 -20.41743 -19.33222 -18.55141 -18.00970 -17.63164 -17.12324 -16.85212 -16.59436 -16.13403 -15.93817 -15.42931 -15.30120 -14.86635 -14.73728 -14.48486 -14.29124 -13.97422 -13.78169 -13.41803 -13.11386 -13.04441 -13.01195 -12.85569 -12.74226 -12.40107 -12.25607 -12.21792 -12.10268 -11.88653 -11.35612 -10.93538 -10.62959 -10.23919 -9.91699 -9.58206 -9.20492 -8.24949 -6.42764 -0.13934 0.37390 1.49543 1.51606 1.58949 1.82437 1.93987 2.31197 2.42210 2.75698 2.97326 3.42385 3.69159 3.81860 3.86117 4.10540 4.15939 4.26471 4.29384 4.34447 4.43977 4.52852 4.58802 4.63278 4.65154 4.76094 4.79946 4.87633 4.87862 4.93898 5.16759 5.24189 5.26057 5.28588 5.51919 5.73027 5.76835 5.93428 6.39976 6.62831 6.82418 7.17893 7.30918 7.44038 8.81193 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.004424 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.079271 B = 6327.782570 C = 7168.132997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.165 3.835 4 C -0.220 4.220 5 C -0.018 4.018 6 C -0.114 4.114 7 C -0.167 4.167 8 C -0.050 4.050 9 C -0.204 4.204 10 C 0.566 3.434 11 O -0.587 6.587 12 N -0.634 5.634 13 C 0.111 3.889 14 C 0.220 3.780 15 O -0.588 6.588 16 C -0.558 4.558 17 H 0.073 0.927 18 C 0.035 3.965 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.282 1.282 22 H -0.266 1.266 23 H -0.276 1.276 24 C 0.097 3.903 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.164 0.836 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.387 0.613 37 H 0.276 0.724 38 H 0.097 0.903 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.242 10.116 5.927 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.118 3.882 4 C -0.238 4.238 5 C -0.019 4.019 6 C -0.170 4.170 7 C -0.185 4.185 8 C -0.069 4.069 9 C -0.208 4.208 10 C 0.359 3.641 11 O -0.470 6.470 12 N -0.367 5.367 13 C -0.011 4.011 14 C 0.179 3.821 15 O -0.400 6.400 16 C -0.596 4.596 17 H 0.091 0.909 18 C -0.166 4.166 19 N -0.556 5.556 20 Si 0.794 3.206 21 H -0.207 1.207 22 H -0.190 1.190 23 H -0.202 1.202 24 C -0.025 4.025 25 H 0.128 0.872 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.181 0.819 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.894 9.035 6.426 17.775 hybrid contribution 1.127 0.085 -0.559 1.260 sum -12.767 9.120 5.868 16.751 Atomic orbital electron populations 1.23436 0.76306 1.05461 1.02807 1.86287 1.23631 1.26761 1.87164 1.19269 0.90627 0.85788 0.92564 1.21358 1.01233 0.90472 1.10764 1.20364 0.94022 0.95790 0.91690 1.20960 0.99420 0.92614 1.04053 1.21237 0.93619 0.98585 1.05095 1.21492 1.00855 0.90635 0.93888 1.19362 0.91545 0.93780 1.16086 1.18300 0.80540 0.88566 0.76716 1.90676 1.71739 1.34320 1.50223 1.50140 1.10587 1.18398 1.57611 1.23479 0.85432 0.93798 0.98394 1.20134 0.91403 0.89049 0.81510 1.86062 1.75454 1.60252 1.18199 1.21680 0.91895 1.33970 1.12035 0.90852 1.25747 1.03162 0.93483 0.94176 1.69473 1.37630 1.34663 1.13850 0.85429 0.79063 0.78106 0.77955 1.20728 1.19040 1.20159 1.24159 0.89709 0.94481 0.94165 0.87235 0.90662 0.90934 0.81900 0.88986 0.89722 0.89850 0.82477 0.84818 0.92617 0.87599 0.75882 0.91418 0.88501 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -11.65 8.86 -70.39 -0.62 -12.27 16 3 C 0.17 5.67 6.67 22.84 0.15 5.82 16 4 C -0.22 -5.33 8.67 22.34 0.19 -5.14 16 5 C -0.02 -0.39 5.88 -19.83 -0.12 -0.50 16 6 C -0.11 -1.36 10.00 71.24 0.71 -0.64 16 7 C -0.17 -4.08 9.67 22.24 0.22 -3.86 16 8 C -0.05 -1.62 8.82 22.52 0.20 -1.42 16 9 C -0.20 -8.00 5.83 -20.01 -0.12 -8.12 16 10 C 0.57 26.89 7.76 86.70 0.67 27.56 16 11 O -0.59 -31.39 16.29 15.37 0.25 -31.14 16 12 N -0.63 -29.45 3.58 -843.39 -3.02 -32.47 16 13 C 0.11 5.20 8.23 86.48 0.71 5.91 16 14 C 0.22 10.97 1.40 -10.88 -0.02 10.95 16 15 O -0.59 -32.04 13.48 -148.98 -2.01 -34.05 16 16 C -0.56 -28.13 8.61 25.60 0.22 -27.91 16 17 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 18 C 0.04 1.73 5.40 84.65 0.46 2.19 16 19 N -0.92 -46.30 11.20 21.45 0.24 -46.06 16 20 Si 0.97 39.20 29.54 68.60 2.03 41.22 16 21 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.10 4.31 5.69 86.44 0.49 4.81 16 25 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 27 H 0.07 1.22 7.66 -2.39 -0.02 1.21 16 28 H 0.16 2.75 6.30 -2.91 -0.02 2.73 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.16 2.83 8.06 -2.92 -0.02 2.81 16 33 H 0.13 4.32 5.54 -2.91 -0.02 4.30 16 34 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.11 4.43 8.09 -2.39 -0.02 4.41 16 36 H 0.39 21.05 6.60 -74.06 -0.49 20.56 16 37 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 38 H 0.10 3.94 7.70 -2.39 -0.02 3.93 16 39 H 0.06 2.89 7.86 -2.39 -0.02 2.87 16 Total: -1.00 -69.57 328.91 2.35 -67.23 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.59 Total: 36.50 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 4.89 Total: 11.05 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.78 Total: -78.53 kcal Atomic # 8 Polarization: -75.08 SS G_CDS: -2.38 Total: -77.46 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.22 kcal Total: -69.57 2.35 -67.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526012565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.931 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds