Wall clock time and date at job start Tue Mar 31 2020 07:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47360 * 2 1 4 4 C 1.50699 * 109.47092 * 120.00045 * 2 1 3 5 5 H 1.08001 * 120.00505 * 117.69645 * 4 2 1 6 6 C 1.37880 * 120.00053 * 297.69014 * 4 2 1 7 7 N 1.31524 * 119.99688 * 6.58618 * 6 4 2 8 8 Si 1.86801 * 120.00427 * 186.58210 * 6 4 2 9 9 H 1.48502 * 109.46956 * 84.99522 * 8 6 4 10 10 H 1.48500 * 109.46995 * 204.99703 * 8 6 4 11 11 H 1.48499 * 109.46907 * 324.99547 * 8 6 4 12 12 C 1.53007 * 109.46988 * 239.99588 * 2 1 3 13 13 S 1.81395 * 109.47022 * 60.00244 * 12 2 1 14 14 O 1.42102 * 110.54340 * 291.62661 * 13 12 2 15 15 O 1.42103 * 110.54446 * 68.37099 * 13 12 2 16 16 N 1.65594 * 104.44813 * 179.97438 * 13 12 2 17 17 C 1.46927 * 120.62894 * 269.71862 * 16 13 12 18 18 C 1.52762 * 109.00663 * 233.58385 * 17 16 13 19 19 C 1.53043 * 109.38589 * 305.58930 * 18 17 16 20 20 O 1.42901 * 109.44528 * 181.25332 * 19 18 17 21 21 C 1.53041 * 109.53607 * 61.24165 * 19 18 17 22 22 C 1.46930 * 120.63273 * 90.00195 * 16 13 12 23 23 H 1.09001 * 109.47084 * 299.99939 * 1 2 3 24 24 H 1.08997 * 109.47128 * 60.00006 * 1 2 3 25 25 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47304 * 186.67467 * 3 2 1 27 27 H 1.09007 * 109.46786 * 306.66880 * 3 2 1 28 28 H 1.08996 * 109.47330 * 66.66560 * 3 2 1 29 29 H 0.97001 * 119.99986 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46567 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.46669 * 299.99878 * 12 2 1 32 32 H 1.08995 * 109.59046 * 353.41697 * 17 16 13 33 33 H 1.09002 * 109.58695 * 113.85069 * 17 16 13 34 34 H 1.09007 * 109.56485 * 185.55099 * 18 17 16 35 35 H 1.09003 * 109.36226 * 65.50407 * 18 17 16 36 36 H 1.09000 * 109.45641 * 301.21883 * 19 18 17 37 37 H 0.96700 * 113.99849 * 59.94373 * 20 19 18 38 38 H 1.08995 * 109.49383 * 178.68759 * 21 19 18 39 39 H 1.08996 * 109.49755 * 58.58626 * 21 19 18 40 40 H 1.09000 * 109.58290 * 246.15377 * 22 16 13 41 41 H 1.09000 * 109.58398 * 6.43284 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6222 -1.6097 1.1319 6 6 1.7390 -0.2122 2.4822 7 7 0.9155 0.8055 2.6085 8 14 2.5110 -0.9827 3.9987 9 1 3.8502 -0.3845 4.2306 10 1 1.6447 -0.7295 5.1780 11 1 2.6516 -2.4467 3.7930 12 6 2.0400 -0.7214 -1.2493 13 16 1.4354 0.1337 -2.7304 14 8 0.0279 -0.0184 -2.8544 15 8 2.0479 1.4099 -2.8544 16 7 2.0541 -0.7403 -3.9935 17 6 3.3631 -0.4012 -4.5682 18 6 3.2098 -0.2089 -6.0759 19 6 2.5597 -1.4542 -6.6833 20 8 2.4423 -1.2876 -8.0977 21 6 1.1691 -1.6533 -6.0762 22 6 1.3018 -1.8656 -4.5649 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1235 1.4447 -0.1195 27 1 1.5825 1.9896 -0.8244 28 1 1.7774 1.9207 0.9436 29 1 0.7088 1.1558 3.4891 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2491 32 1 3.7315 0.5211 -4.1193 33 1 4.0674 -1.2105 -4.3757 34 1 4.1905 -0.0543 -6.5258 35 1 2.5803 0.6602 -6.2672 36 1 3.1773 -2.3267 -6.4704 37 1 3.2870 -1.1563 -8.5498 38 1 0.6974 -2.5269 -6.5262 39 1 0.5588 -0.7707 -6.2674 40 1 1.8346 -2.7967 -4.3720 41 1 0.3115 -1.9107 -4.1117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564741592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:42 Heat of formation + Delta-G solvation = -128.839300 kcal Electronic energy + Delta-G solvation = -23017.961817 eV Core-core repulsion = 19638.829822 eV Total energy + Delta-G solvation = -3379.131995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.04650 -36.63758 -36.30526 -36.09503 -35.27872 -31.68588 -31.27314 -31.11031 -26.65952 -25.73964 -25.24692 -24.05182 -23.53447 -20.64019 -19.47807 -18.41438 -17.72095 -17.26755 -16.00676 -15.85660 -15.43233 -14.89963 -14.76590 -14.54503 -14.48545 -14.18470 -13.27414 -13.14734 -13.01867 -12.56854 -12.53256 -12.20933 -12.03336 -11.97480 -11.52060 -11.30740 -11.25735 -11.07383 -11.02296 -10.93154 -10.74333 -10.59195 -10.39182 -10.32278 -10.10555 -10.03739 -9.68135 -9.59409 -9.01027 -8.67400 -8.39641 -6.05738 -4.17387 0.79741 3.04666 3.24806 3.31913 3.33315 3.95671 4.31871 4.38686 4.51868 4.54191 4.71642 4.90872 5.00503 5.08264 5.18849 5.20266 5.45929 5.51960 5.57359 5.61533 5.67755 5.71782 5.79460 5.95246 6.13197 6.15256 6.36103 6.65506 6.66929 6.76844 6.89158 7.02374 7.29066 7.41671 7.46621 7.65826 7.95660 8.07989 8.31680 8.80916 9.47808 10.95353 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004297 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.021016 B = 6514.005092 C = 6619.610175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 C -0.160 4.160 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.581 4.581 13 S 2.592 3.408 14 O -0.961 6.961 15 O -0.962 6.962 16 N -1.011 6.011 17 C 0.120 3.880 18 C -0.164 4.164 19 C 0.106 3.894 20 O -0.569 6.569 21 C -0.125 4.125 22 C 0.120 3.880 23 H 0.097 0.903 24 H 0.026 0.974 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.263 0.737 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.376 0.624 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -5.212 -15.500 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.218 4.218 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.714 4.714 13 S 2.691 3.309 14 O -0.951 6.951 15 O -0.952 6.952 16 N -0.847 5.847 17 C -0.006 4.006 18 C -0.203 4.203 19 C 0.048 3.952 20 O -0.375 6.375 21 C -0.164 4.164 22 C -0.006 4.006 23 H 0.116 0.884 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.223 0.777 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.899 -4.396 -15.338 16.425 hybrid contribution 1.492 -0.893 0.997 2.004 sum 5.391 -5.290 -14.341 16.208 Atomic orbital electron populations 1.22305 0.96805 1.00648 1.02375 1.17948 0.92953 0.92132 0.89126 1.22204 0.98968 0.97609 1.03002 1.20929 1.33415 1.10464 0.89400 0.92314 1.24943 0.94719 0.95164 0.98895 1.69816 1.33538 1.25095 1.23559 0.86559 0.79282 0.79541 0.82306 1.20537 1.21172 1.20012 1.30583 1.11200 1.12795 1.16871 1.05750 0.74676 0.75065 0.75383 1.93529 1.29397 1.86499 1.85683 1.93529 1.78120 1.37845 1.85739 1.58068 1.29309 1.47172 1.50187 1.21248 0.84199 1.01884 0.93269 1.22531 1.01637 0.99811 0.96360 1.21768 0.97122 0.96075 0.80266 1.86526 1.35610 1.95654 1.19663 1.21822 0.96076 1.03615 0.94852 1.21386 0.97486 0.88696 0.92992 0.88415 0.95482 0.94506 0.94620 0.95520 0.88760 0.92694 0.86463 0.86440 0.88345 0.91505 0.90652 0.90490 0.92540 0.77725 0.90167 0.90590 0.91370 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 7.79 37.16 0.29 -3.74 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.92 7.58 37.16 0.28 -3.63 16 4 C -0.50 -13.12 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 6 C 0.06 1.71 5.09 -17.81 -0.09 1.62 16 7 N -0.88 -23.98 9.39 55.43 0.52 -23.46 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -11.22 5.11 37.16 0.19 -11.03 16 13 S 2.59 47.91 4.49 -107.50 -0.48 47.43 16 14 O -0.96 -19.99 14.21 -57.54 -0.82 -20.81 16 15 O -0.96 -19.93 14.34 -57.54 -0.83 -20.75 16 16 N -1.01 -14.09 3.23 -113.76 -0.37 -14.46 16 17 C 0.12 1.38 6.40 -3.93 -0.03 1.36 16 18 C -0.16 -1.65 5.68 -26.83 -0.15 -1.80 16 19 C 0.11 1.04 3.43 -26.69 -0.09 0.95 16 20 O -0.57 -5.58 13.32 -35.23 -0.47 -6.05 16 21 C -0.12 -1.39 5.73 -26.61 -0.15 -1.54 16 22 C 0.12 1.42 6.43 -3.71 -0.02 1.40 16 23 H 0.10 2.60 6.01 -51.93 -0.31 2.29 16 24 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.62 5.96 -51.92 -0.31 0.31 16 28 H 0.09 2.49 5.99 -51.93 -0.31 2.18 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 31 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 32 H 0.10 1.22 6.85 -51.93 -0.36 0.86 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.38 2.02 9.08 45.56 0.41 2.43 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.28 6.86 -51.93 -0.36 0.92 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -32.20 323.47 -8.43 -40.63 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.71 Total: 5.09 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -0.13 Total: -27.95 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.15 Total: -37.92 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -2.11 Total: -47.61 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 47.91 SS G_CDS: -0.48 Total: 47.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.20 -8.43 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564741592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.212 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds