Wall clock time and date at job start Tue Mar 31 2020 07:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47360 * 2 1 4 4 C 1.50699 * 109.47092 * 120.00045 * 2 1 3 5 5 H 1.08001 * 120.00505 * 117.69645 * 4 2 1 6 6 C 1.37880 * 120.00053 * 297.69014 * 4 2 1 7 7 N 1.31524 * 119.99688 * 6.58618 * 6 4 2 8 8 Si 1.86801 * 120.00427 * 186.58210 * 6 4 2 9 9 H 1.48502 * 109.46956 * 84.99522 * 8 6 4 10 10 H 1.48500 * 109.46995 * 204.99703 * 8 6 4 11 11 H 1.48499 * 109.46907 * 324.99547 * 8 6 4 12 12 C 1.53007 * 109.46988 * 239.99588 * 2 1 3 13 13 S 1.81395 * 109.47022 * 60.00244 * 12 2 1 14 14 O 1.42102 * 110.54340 * 291.62661 * 13 12 2 15 15 O 1.42103 * 110.54446 * 68.37099 * 13 12 2 16 16 N 1.65594 * 104.44813 * 179.97438 * 13 12 2 17 17 C 1.46927 * 120.62894 * 269.71862 * 16 13 12 18 18 C 1.52762 * 109.00663 * 233.58385 * 17 16 13 19 19 C 1.53043 * 109.38589 * 305.58930 * 18 17 16 20 20 O 1.42901 * 109.44528 * 181.25332 * 19 18 17 21 21 C 1.53041 * 109.53607 * 61.24165 * 19 18 17 22 22 C 1.46930 * 120.63273 * 90.00195 * 16 13 12 23 23 H 1.09001 * 109.47084 * 299.99939 * 1 2 3 24 24 H 1.08997 * 109.47128 * 60.00006 * 1 2 3 25 25 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47304 * 186.67467 * 3 2 1 27 27 H 1.09007 * 109.46786 * 306.66880 * 3 2 1 28 28 H 1.08996 * 109.47330 * 66.66560 * 3 2 1 29 29 H 0.97001 * 119.99986 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46567 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.46669 * 299.99878 * 12 2 1 32 32 H 1.08995 * 109.59046 * 353.41697 * 17 16 13 33 33 H 1.09002 * 109.58695 * 113.85069 * 17 16 13 34 34 H 1.09007 * 109.56485 * 185.55099 * 18 17 16 35 35 H 1.09003 * 109.36226 * 65.50407 * 18 17 16 36 36 H 1.09000 * 109.45641 * 301.21883 * 19 18 17 37 37 H 0.96700 * 113.99849 * 59.94373 * 20 19 18 38 38 H 1.08995 * 109.49383 * 178.68759 * 21 19 18 39 39 H 1.08996 * 109.49755 * 58.58626 * 21 19 18 40 40 H 1.09000 * 109.58290 * 246.15377 * 22 16 13 41 41 H 1.09000 * 109.58398 * 6.43284 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6222 -1.6097 1.1319 6 6 1.7390 -0.2122 2.4822 7 7 0.9155 0.8055 2.6085 8 14 2.5110 -0.9827 3.9987 9 1 3.8502 -0.3845 4.2306 10 1 1.6447 -0.7295 5.1780 11 1 2.6516 -2.4467 3.7930 12 6 2.0400 -0.7214 -1.2493 13 16 1.4354 0.1337 -2.7304 14 8 0.0279 -0.0184 -2.8544 15 8 2.0479 1.4099 -2.8544 16 7 2.0541 -0.7403 -3.9935 17 6 3.3631 -0.4012 -4.5682 18 6 3.2098 -0.2089 -6.0759 19 6 2.5597 -1.4542 -6.6833 20 8 2.4423 -1.2876 -8.0977 21 6 1.1691 -1.6533 -6.0762 22 6 1.3018 -1.8656 -4.5649 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1235 1.4447 -0.1195 27 1 1.5825 1.9896 -0.8244 28 1 1.7774 1.9207 0.9436 29 1 0.7088 1.1558 3.4891 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2491 32 1 3.7315 0.5211 -4.1193 33 1 4.0674 -1.2105 -4.3757 34 1 4.1905 -0.0543 -6.5258 35 1 2.5803 0.6602 -6.2672 36 1 3.1773 -2.3267 -6.4704 37 1 3.2870 -1.1563 -8.5498 38 1 0.6974 -2.5269 -6.5262 39 1 0.5588 -0.7707 -6.2674 40 1 1.8346 -2.7967 -4.3720 41 1 0.3115 -1.9107 -4.1117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564741592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:42 Heat of formation + Delta-G solvation = -153.037279 kcal Electronic energy + Delta-G solvation = -23019.011121 eV Core-core repulsion = 19638.829822 eV Total energy + Delta-G solvation = -3380.181298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88432 -38.18421 -38.12943 -37.02814 -36.76247 -33.63738 -32.15425 -32.00518 -28.32230 -27.70909 -27.25207 -24.96323 -24.40236 -21.57542 -21.28586 -19.65009 -18.96424 -18.18971 -17.86522 -17.13170 -16.93759 -16.68341 -15.72693 -15.54792 -15.51031 -15.26182 -14.78722 -14.68735 -14.43490 -14.15879 -13.80331 -13.60495 -13.42209 -13.02408 -12.94285 -12.85635 -12.79495 -12.76956 -12.50483 -12.27986 -12.19523 -12.12404 -12.02403 -11.94788 -11.57983 -11.41894 -11.32556 -10.76251 -10.67398 -10.39626 -9.96215 -8.03678 -6.22028 -0.64770 1.44928 1.46476 1.54563 1.79203 2.44456 2.91209 3.17818 3.23023 3.28949 3.63156 3.84184 3.99783 4.08405 4.16981 4.21391 4.28945 4.38755 4.58283 4.71166 4.74914 4.75246 4.81923 4.84689 4.86253 4.92742 4.98050 5.07215 5.12525 5.21625 5.34011 5.37579 5.47559 5.64132 5.68203 5.95802 6.10738 6.33874 6.82627 6.94578 7.46154 8.96056 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004297 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.021016 B = 6514.005092 C = 6619.610175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 C -0.156 4.156 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.267 1.267 12 C -0.583 4.583 13 S 2.606 3.394 14 O -0.990 6.990 15 O -0.990 6.990 16 N -1.004 6.004 17 C 0.109 3.891 18 C -0.161 4.161 19 C 0.110 3.890 20 O -0.586 6.586 21 C -0.128 4.128 22 C 0.113 3.887 23 H 0.072 0.928 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.261 0.739 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.395 0.605 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -7.272 -16.690 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 C -0.214 4.214 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.715 4.715 13 S 2.706 3.294 14 O -0.981 6.981 15 O -0.980 6.980 16 N -0.843 5.843 17 C -0.016 4.016 18 C -0.201 4.201 19 C 0.051 3.949 20 O -0.395 6.395 21 C -0.167 4.167 22 C -0.012 4.012 23 H 0.091 0.909 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.245 0.755 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.841 -6.456 -16.532 18.684 hybrid contribution 0.893 -0.253 1.261 1.566 sum 6.734 -6.709 -15.271 17.988 Atomic orbital electron populations 1.22230 0.97796 1.00441 1.01238 1.17952 0.92360 0.92137 0.91078 1.22130 0.99460 0.98153 1.01609 1.21278 1.33290 1.10723 0.90324 0.91758 1.25694 0.95144 0.95693 1.01666 1.69962 1.34531 1.26231 1.23906 0.85624 0.78316 0.79073 0.78931 1.20180 1.21428 1.19135 1.30499 1.12503 1.13267 1.15248 1.04957 0.73887 0.74775 0.75805 1.93484 1.31451 1.86913 1.86212 1.93486 1.78416 1.39833 1.86259 1.57710 1.30506 1.47454 1.48675 1.21581 0.83320 1.02756 0.93912 1.22541 1.02931 0.99078 0.95532 1.21742 0.96226 0.96701 0.80241 1.86485 1.37563 1.95715 1.19704 1.21844 0.97143 1.03110 0.94619 1.21643 0.97239 0.89118 0.93166 0.90929 0.95201 0.94163 0.93798 0.95469 0.91230 0.92919 0.84434 0.84581 0.89595 0.87915 0.87455 0.93192 0.89867 0.75462 0.88628 0.93277 0.87805 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.96 7.79 71.98 0.56 -7.40 16 2 C 0.07 3.21 0.52 -52.93 -0.03 3.18 16 3 C -0.16 -7.71 7.58 71.98 0.55 -7.16 16 4 C -0.52 -26.66 8.01 25.60 0.20 -26.45 16 5 H 0.06 3.16 7.75 -2.91 -0.02 3.14 16 6 C 0.02 0.92 5.09 84.65 0.43 1.35 16 7 N -0.91 -50.24 9.39 21.45 0.20 -50.04 16 8 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 C -0.58 -21.64 5.11 71.98 0.37 -21.27 16 13 S 2.61 94.87 4.49 -56.49 -0.25 94.61 16 14 O -0.99 -41.49 14.21 -127.65 -1.81 -43.30 16 15 O -0.99 -41.05 14.34 -127.65 -1.83 -42.88 16 16 N -1.00 -26.03 3.23 -513.84 -1.66 -27.69 16 17 C 0.11 2.20 6.40 86.22 0.55 2.76 16 18 C -0.16 -2.81 5.68 30.53 0.17 -2.64 16 19 C 0.11 1.79 3.43 30.62 0.11 1.89 16 20 O -0.59 -9.83 13.32 -148.98 -1.98 -11.82 16 21 C -0.13 -2.60 5.73 30.67 0.18 -2.42 16 22 C 0.11 2.41 6.43 86.36 0.56 2.97 16 23 H 0.07 3.98 6.01 -2.39 -0.01 3.96 16 24 H 0.03 1.43 5.46 -2.39 -0.01 1.42 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.03 1.29 5.96 -2.38 -0.01 1.28 16 28 H 0.07 3.77 5.99 -2.39 -0.01 3.76 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 31 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 32 H 0.09 1.98 6.85 -2.39 -0.02 1.96 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.40 2.93 9.08 -74.06 -0.67 2.26 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 2.13 6.86 -2.39 -0.02 2.11 16 Total: -1.00 -70.09 323.47 -1.31 -71.40 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.35 Total: 21.19 kcal Atomic # 6 Polarization: -58.85 SS G_CDS: 3.65 Total: -55.21 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.46 Total: -77.73 kcal Atomic # 8 Polarization: -92.37 SS G_CDS: -5.63 Total: -98.00 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 94.87 SS G_CDS: -0.25 Total: 94.61 kcal Total: -70.09 -1.31 -71.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564741592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.633 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds