Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47139 * 2 1 4 4 C 1.53006 * 109.49752 * 54.44967 * 3 2 1 5 5 O 1.42899 * 109.47334 * 55.44539 * 4 3 2 6 6 C 1.53039 * 109.49714 * 174.50967 * 3 2 1 7 7 C 1.53041 * 109.53759 * 58.58921 * 6 3 2 8 8 C 1.53195 * 109.31082 * 61.36171 * 7 6 3 9 9 N 1.46925 * 108.77882 * 305.36528 * 8 7 6 10 10 S 1.65592 * 120.63240 * 233.61054 * 9 8 7 11 11 O 1.42101 * 104.27675 * 206.07128 * 10 9 8 12 12 O 1.42103 * 104.28106 * 333.92752 * 10 9 8 13 13 C 1.81394 * 104.45284 * 89.99981 * 10 9 8 14 14 C 1.50695 * 109.47652 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99719 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00542 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00246 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99596 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46735 * 90.00141 * 18 16 14 20 20 H 1.48504 * 109.46729 * 210.00220 * 18 16 14 21 21 H 1.48495 * 109.47159 * 329.99667 * 18 16 14 22 22 C 1.46925 * 118.73572 * 53.61015 * 9 8 7 23 23 H 1.08997 * 109.47595 * 295.19316 * 1 2 3 24 24 H 1.09012 * 109.46765 * 55.19051 * 1 2 3 25 25 H 1.08997 * 109.47397 * 175.18253 * 1 2 3 26 26 H 1.09003 * 109.46261 * 119.99915 * 2 1 3 27 27 H 1.08999 * 109.47207 * 239.99676 * 2 1 3 28 28 H 1.08996 * 109.47129 * 175.44632 * 4 3 2 29 29 H 1.09000 * 109.46744 * 295.44231 * 4 3 2 30 30 H 0.96695 * 114.00013 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.45962 * 178.60738 * 6 3 2 32 32 H 1.09004 * 109.46142 * 298.56739 * 6 3 2 33 33 H 1.09000 * 109.50016 * 181.31545 * 7 6 3 34 34 H 1.09000 * 109.49643 * 301.38053 * 7 6 3 35 35 H 1.08994 * 109.58635 * 65.15879 * 8 7 6 36 36 H 1.09007 * 109.58247 * 185.43757 * 8 7 6 37 37 H 1.08997 * 109.47040 * 300.00253 * 13 10 9 38 38 H 1.09008 * 109.47226 * 60.00085 * 13 10 9 39 39 H 0.97001 * 120.00168 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.58795 * 186.60498 * 22 9 8 41 41 H 1.09003 * 109.59005 * 66.17653 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4196 2.2034 1.1735 5 8 1.6977 1.5098 2.3915 6 6 3.5642 1.4453 0.1380 7 6 4.1842 0.6557 -1.0171 8 6 3.8175 1.3274 -2.3442 9 7 2.3562 1.4596 -2.4195 10 16 1.5219 0.8721 -3.7237 11 8 0.3472 1.6699 -3.7766 12 8 2.4688 0.8914 -4.7831 13 6 1.1120 -0.8350 -3.2674 14 6 0.3416 -1.4835 -4.3884 15 1 0.1209 -0.9247 -5.2859 16 6 -0.0817 -2.7902 -4.2683 17 7 -0.7537 -3.3563 -5.2468 18 14 0.2994 -3.7565 -2.7157 19 1 -0.8003 -3.5713 -1.7351 20 1 0.4281 -5.1979 -3.0489 21 1 1.5732 -3.2684 -2.1291 22 6 1.6491 2.1230 -1.3156 23 1 -0.3634 0.4374 0.9299 24 1 -0.3633 0.5867 -0.8439 25 1 -0.3634 -1.0240 -0.0863 26 1 1.8932 -0.5139 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8442 3.2062 1.2214 29 1 0.3410 2.2720 1.0324 30 1 1.3332 1.9363 3.1790 31 1 3.9291 2.4721 0.1131 32 1 3.8440 0.9836 1.0850 33 1 5.2683 0.6384 -0.9054 34 1 3.8011 -0.3647 -1.0072 35 1 4.2768 2.3146 -2.3932 36 1 4.1745 0.7168 -3.1736 37 1 2.0306 -1.3933 -3.0868 38 1 0.5040 -0.8332 -2.3626 39 1 -1.0517 -4.2755 -5.1622 40 1 0.5731 2.0362 -1.4662 41 1 1.9315 3.1752 -1.2806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572781180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = -135.205236 kcal Electronic energy + Delta-G solvation = -23811.671875 eV Core-core repulsion = 20432.263832 eV Total energy + Delta-G solvation = -3379.408043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82315 -36.60711 -36.32727 -35.12035 -33.77457 -33.19964 -32.01026 -30.16765 -29.47993 -26.00771 -24.58193 -23.50424 -23.01619 -21.61693 -18.79758 -17.91908 -17.65842 -17.44625 -16.61314 -15.69386 -15.59385 -15.42175 -14.87350 -14.39509 -14.23967 -14.13040 -13.94728 -13.33427 -13.00564 -12.77204 -12.69332 -12.41885 -12.21682 -12.04028 -11.66330 -11.61615 -11.34957 -11.27848 -11.23681 -10.99477 -10.86368 -10.76708 -10.58610 -10.31813 -10.22763 -10.06185 -9.95868 -9.87091 -9.47345 -8.82829 -8.58503 -6.31264 -4.39828 1.11939 3.14341 3.22660 3.23136 3.33534 4.10667 4.22114 4.56409 4.65974 4.74668 4.84477 4.87685 5.07321 5.15287 5.18395 5.24316 5.31588 5.38428 5.49231 5.52917 5.59755 5.72746 5.77841 5.84565 5.85628 5.99778 6.06248 6.17357 6.20022 6.29810 6.31886 6.35242 6.45072 6.46519 6.59391 6.90648 7.22136 7.50033 8.00784 8.60445 9.24391 10.79847 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.007495 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.097907 B = 3735.104736 C = 4525.201562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.072 4.072 4 C 0.086 3.914 5 O -0.566 6.566 6 C -0.098 4.098 7 C -0.141 4.141 8 C 0.122 3.878 9 N -1.006 6.006 10 S 2.600 3.400 11 O -0.970 6.970 12 O -0.970 6.970 13 C -0.476 4.476 14 C -0.531 4.531 15 H 0.084 0.916 16 C 0.090 3.910 17 N -0.881 5.881 18 Si 0.879 3.121 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.261 1.261 22 C 0.132 3.868 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.374 0.626 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.271 0.729 40 H 0.095 0.905 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 9.601 15.652 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.154 4.154 3 C -0.074 4.074 4 C 0.008 3.992 5 O -0.371 6.371 6 C -0.136 4.136 7 C -0.180 4.180 8 C -0.003 4.003 9 N -0.841 5.841 10 S 2.700 3.300 11 O -0.961 6.961 12 O -0.960 6.960 13 C -0.610 4.610 14 C -0.570 4.570 15 H 0.102 0.898 16 C -0.116 4.116 17 N -0.516 5.516 18 Si 0.705 3.295 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.186 1.186 22 C 0.006 3.994 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.221 0.779 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.295 9.566 14.349 18.724 hybrid contribution -0.168 -0.742 1.589 1.762 sum 7.126 8.823 15.938 19.561 Atomic orbital electron populations 1.21991 0.96005 1.02419 1.01741 1.21631 0.95889 0.95063 1.02851 1.20978 0.96311 0.96744 0.93325 1.22148 0.98808 0.93869 0.84363 1.86490 1.80340 1.53899 1.16333 1.21431 0.93452 1.00162 0.98541 1.22020 1.00463 1.00501 0.94986 1.21331 0.79706 1.01127 0.98142 1.58014 1.15278 1.73355 1.37451 1.05387 0.73318 0.78286 0.73024 1.93481 1.49303 1.67709 1.85582 1.93487 1.62097 1.88024 1.52434 1.28387 1.06740 1.18432 1.07432 1.20066 1.36875 0.99183 1.00840 0.89781 1.24870 0.93381 0.96903 0.96489 1.69867 1.35832 1.14001 1.31948 0.86770 0.79832 0.79455 0.83431 1.19520 1.20737 1.18564 1.21301 0.97522 0.95764 0.84817 0.92448 0.92190 0.92395 0.91112 0.91091 0.93818 0.93009 0.77940 0.92243 0.91207 0.91038 0.90963 0.91625 0.89097 0.89889 0.89777 0.91897 0.88732 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 7.90 37.16 0.29 -2.04 16 2 C -0.12 -1.62 3.98 -26.73 -0.11 -1.73 16 3 C -0.07 -0.86 0.38 -154.39 -0.06 -0.92 16 4 C 0.09 0.84 5.26 37.16 0.20 1.03 16 5 O -0.57 -5.39 12.41 -35.23 -0.44 -5.82 16 6 C -0.10 -1.07 4.62 -26.69 -0.12 -1.20 16 7 C -0.14 -1.62 5.74 -26.61 -0.15 -1.77 16 8 C 0.12 1.65 6.31 -3.71 -0.02 1.62 16 9 N -1.01 -16.00 2.57 -113.52 -0.29 -16.29 16 10 S 2.60 54.85 5.33 -107.50 -0.57 54.28 16 11 O -0.97 -22.53 16.72 -57.54 -0.96 -23.50 16 12 O -0.97 -22.80 16.73 -57.54 -0.96 -23.76 16 13 C -0.48 -10.74 3.82 36.00 0.14 -10.60 16 14 C -0.53 -14.85 9.68 -34.44 -0.33 -15.19 16 15 H 0.08 2.55 7.96 -52.48 -0.42 2.14 16 16 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 17 N -0.88 -26.24 13.96 55.43 0.77 -25.46 16 18 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 22 C 0.13 1.79 4.88 -3.71 -0.02 1.77 16 23 H 0.06 0.69 6.74 -51.93 -0.35 0.34 16 24 H 0.06 0.89 6.05 -51.92 -0.31 0.57 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 27 H 0.07 1.09 4.12 -51.93 -0.21 0.87 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.48 6.73 -51.93 -0.35 0.13 16 30 H 0.37 1.92 9.12 45.56 0.42 2.34 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.91 6.46 -51.93 -0.34 0.57 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.29 7.11 -51.92 -0.37 0.92 16 37 H 0.08 1.75 7.20 -51.93 -0.37 1.38 16 38 H 0.08 1.76 5.12 -51.92 -0.27 1.50 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.09 1.37 5.23 -51.93 -0.27 1.09 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -34.20 318.51 -7.96 -42.16 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.36 Total: 4.27 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -0.29 Total: -26.57 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.48 Total: -41.75 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -2.36 Total: -53.08 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.57 Total: 54.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.20 -7.96 -42.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572781180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.041 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds