Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47139 * 2 1 4 4 C 1.53006 * 109.49752 * 54.44967 * 3 2 1 5 5 O 1.42899 * 109.47334 * 55.44539 * 4 3 2 6 6 C 1.53039 * 109.49714 * 174.50967 * 3 2 1 7 7 C 1.53041 * 109.53759 * 58.58921 * 6 3 2 8 8 C 1.53195 * 109.31082 * 61.36171 * 7 6 3 9 9 N 1.46925 * 108.77882 * 305.36528 * 8 7 6 10 10 S 1.65592 * 120.63240 * 233.61054 * 9 8 7 11 11 O 1.42101 * 104.27675 * 206.07128 * 10 9 8 12 12 O 1.42103 * 104.28106 * 333.92752 * 10 9 8 13 13 C 1.81394 * 104.45284 * 89.99981 * 10 9 8 14 14 C 1.50695 * 109.47652 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99719 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00542 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00246 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99596 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46735 * 90.00141 * 18 16 14 20 20 H 1.48504 * 109.46729 * 210.00220 * 18 16 14 21 21 H 1.48495 * 109.47159 * 329.99667 * 18 16 14 22 22 C 1.46925 * 118.73572 * 53.61015 * 9 8 7 23 23 H 1.08997 * 109.47595 * 295.19316 * 1 2 3 24 24 H 1.09012 * 109.46765 * 55.19051 * 1 2 3 25 25 H 1.08997 * 109.47397 * 175.18253 * 1 2 3 26 26 H 1.09003 * 109.46261 * 119.99915 * 2 1 3 27 27 H 1.08999 * 109.47207 * 239.99676 * 2 1 3 28 28 H 1.08996 * 109.47129 * 175.44632 * 4 3 2 29 29 H 1.09000 * 109.46744 * 295.44231 * 4 3 2 30 30 H 0.96695 * 114.00013 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.45962 * 178.60738 * 6 3 2 32 32 H 1.09004 * 109.46142 * 298.56739 * 6 3 2 33 33 H 1.09000 * 109.50016 * 181.31545 * 7 6 3 34 34 H 1.09000 * 109.49643 * 301.38053 * 7 6 3 35 35 H 1.08994 * 109.58635 * 65.15879 * 8 7 6 36 36 H 1.09007 * 109.58247 * 185.43757 * 8 7 6 37 37 H 1.08997 * 109.47040 * 300.00253 * 13 10 9 38 38 H 1.09008 * 109.47226 * 60.00085 * 13 10 9 39 39 H 0.97001 * 120.00168 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.58795 * 186.60498 * 22 9 8 41 41 H 1.09003 * 109.59005 * 66.17653 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4196 2.2034 1.1735 5 8 1.6977 1.5098 2.3915 6 6 3.5642 1.4453 0.1380 7 6 4.1842 0.6557 -1.0171 8 6 3.8175 1.3274 -2.3442 9 7 2.3562 1.4596 -2.4195 10 16 1.5219 0.8721 -3.7237 11 8 0.3472 1.6699 -3.7766 12 8 2.4688 0.8914 -4.7831 13 6 1.1120 -0.8350 -3.2674 14 6 0.3416 -1.4835 -4.3884 15 1 0.1209 -0.9247 -5.2859 16 6 -0.0817 -2.7902 -4.2683 17 7 -0.7537 -3.3563 -5.2468 18 14 0.2994 -3.7565 -2.7157 19 1 -0.8003 -3.5713 -1.7351 20 1 0.4281 -5.1979 -3.0489 21 1 1.5732 -3.2684 -2.1291 22 6 1.6491 2.1230 -1.3156 23 1 -0.3634 0.4374 0.9299 24 1 -0.3633 0.5867 -0.8439 25 1 -0.3634 -1.0240 -0.0863 26 1 1.8932 -0.5139 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8442 3.2062 1.2214 29 1 0.3410 2.2720 1.0324 30 1 1.3332 1.9363 3.1790 31 1 3.9291 2.4721 0.1131 32 1 3.8440 0.9836 1.0850 33 1 5.2683 0.6384 -0.9054 34 1 3.8011 -0.3647 -1.0072 35 1 4.2768 2.3146 -2.3932 36 1 4.1745 0.7168 -3.1736 37 1 2.0306 -1.3933 -3.0868 38 1 0.5040 -0.8332 -2.3626 39 1 -1.0517 -4.2755 -5.1622 40 1 0.5731 2.0362 -1.4662 41 1 1.9315 3.1752 -1.2806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572781180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = -162.887883 kcal Electronic energy + Delta-G solvation = -23812.872285 eV Core-core repulsion = 20432.263832 eV Total energy + Delta-G solvation = -3380.608452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78165 -38.13664 -37.38531 -36.90191 -35.39493 -34.70478 -33.04137 -31.87905 -30.78518 -26.84314 -25.76079 -24.97522 -24.50146 -22.61800 -20.15591 -19.56894 -19.03389 -18.32065 -18.14597 -17.43371 -17.04134 -16.44874 -16.09600 -15.89546 -15.55059 -15.18210 -15.00171 -14.76229 -14.47039 -14.23987 -13.87591 -13.71627 -13.48953 -13.25201 -13.22919 -13.10289 -12.93041 -12.73550 -12.65823 -12.48000 -12.30038 -12.01169 -11.90279 -11.73579 -11.63012 -11.28537 -11.12346 -10.97191 -10.95077 -10.65040 -9.81952 -8.46851 -6.62501 -0.56127 1.29824 1.31711 1.43025 1.87979 2.24399 2.84281 2.95947 3.24399 3.49228 3.58162 3.84667 3.97992 4.14119 4.21996 4.24291 4.40987 4.44196 4.48678 4.54866 4.56346 4.63090 4.66812 4.74375 4.80862 4.91929 4.94638 5.06429 5.12075 5.17524 5.22676 5.30603 5.35289 5.41680 5.51611 5.57944 5.73045 5.79952 6.41340 7.05284 7.05971 8.68485 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.007495 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.097907 B = 3735.104736 C = 4525.201562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.070 4.070 4 C 0.090 3.910 5 O -0.580 6.580 6 C -0.093 4.093 7 C -0.138 4.138 8 C 0.113 3.887 9 N -0.995 5.995 10 S 2.618 3.382 11 O -0.998 6.998 12 O -1.000 7.000 13 C -0.482 4.482 14 C -0.551 4.551 15 H 0.038 0.962 16 C 0.030 3.970 17 N -0.931 5.931 18 Si 0.942 3.058 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.233 1.233 22 C 0.123 3.877 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.394 0.606 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.276 0.724 40 H 0.082 0.918 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 10.488 19.196 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.156 4.156 3 C -0.072 4.072 4 C 0.012 3.988 5 O -0.388 6.388 6 C -0.130 4.130 7 C -0.177 4.177 8 C -0.011 4.011 9 N -0.834 5.834 10 S 2.717 3.283 11 O -0.988 6.988 12 O -0.990 6.990 13 C -0.615 4.615 14 C -0.590 4.590 15 H 0.056 0.944 16 C -0.172 4.172 17 N -0.569 5.569 18 Si 0.763 3.237 19 H -0.180 1.180 20 H -0.202 1.202 21 H -0.156 1.156 22 C -0.002 4.002 23 H 0.097 0.903 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.243 0.757 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.035 10.465 17.901 22.618 hybrid contribution -0.709 -0.928 0.469 1.258 sum 8.326 9.537 18.370 22.309 Atomic orbital electron populations 1.22023 0.96605 1.01483 1.02336 1.21628 0.95388 0.96481 1.02084 1.20953 0.97396 0.95490 0.93329 1.22054 0.98824 0.94246 0.83685 1.86430 1.80714 1.54622 1.17036 1.21409 0.92316 1.01119 0.98160 1.22024 1.02090 0.99626 0.93932 1.21645 0.77737 1.02668 0.99070 1.57585 1.16282 1.72632 1.36874 1.04501 0.72772 0.77438 0.73629 1.93436 1.50992 1.67908 1.86450 1.93440 1.62702 1.88141 1.54713 1.28403 1.06929 1.20121 1.06035 1.20315 1.37855 0.99653 1.01142 0.94383 1.25932 0.92876 0.98023 1.00364 1.70011 1.37434 1.14777 1.34645 0.85771 0.81326 0.77717 0.78909 1.18004 1.20198 1.15569 1.21595 0.96774 0.97194 0.84663 0.90330 0.93488 0.93768 0.90737 0.92893 0.91718 0.92871 0.75663 0.90421 0.90854 0.88500 0.92219 0.89147 0.90334 0.88109 0.87961 0.91469 0.89997 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.45 7.90 71.98 0.57 -3.88 16 2 C -0.12 -2.99 3.98 30.59 0.12 -2.87 16 3 C -0.07 -1.43 0.38 -52.10 -0.02 -1.45 16 4 C 0.09 1.39 5.26 71.98 0.38 1.77 16 5 O -0.58 -8.71 12.41 -148.98 -1.85 -10.55 16 6 C -0.09 -1.63 4.62 30.62 0.14 -1.49 16 7 C -0.14 -2.70 5.74 30.67 0.18 -2.52 16 8 C 0.11 2.76 6.31 86.36 0.54 3.30 16 9 N -1.00 -30.03 2.57 -513.07 -1.32 -31.34 16 10 S 2.62 111.67 5.33 -56.49 -0.30 111.37 16 11 O -1.00 -47.34 16.72 -127.65 -2.13 -49.47 16 12 O -1.00 -47.95 16.73 -127.65 -2.14 -50.09 16 13 C -0.48 -21.89 3.82 71.23 0.27 -21.61 16 14 C -0.55 -32.04 9.68 25.60 0.25 -31.79 16 15 H 0.04 2.48 7.96 -2.91 -0.02 2.45 16 16 C 0.03 1.71 5.47 84.66 0.46 2.18 16 17 N -0.93 -57.56 13.96 21.45 0.30 -57.26 16 18 Si 0.94 41.92 27.47 68.60 1.88 43.81 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.23 -9.21 6.54 99.48 0.65 -8.56 16 22 C 0.12 3.02 4.88 86.36 0.42 3.44 16 23 H 0.08 1.71 6.74 -2.39 -0.02 1.69 16 24 H 0.05 1.35 6.05 -2.38 -0.01 1.34 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.82 7.76 -2.39 -0.02 1.80 16 27 H 0.05 1.51 4.12 -2.39 -0.01 1.50 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.80 6.73 -2.39 -0.02 0.79 16 30 H 0.39 2.48 9.12 -74.06 -0.68 1.80 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.30 7.78 -2.38 -0.02 1.28 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.34 6.46 -2.39 -0.02 1.32 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.12 7.11 -2.38 -0.02 2.10 16 37 H 0.10 4.18 7.20 -2.39 -0.02 4.16 16 38 H 0.10 4.26 5.12 -2.39 -0.01 4.24 16 39 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.08 2.26 5.23 -2.39 -0.01 2.24 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.78 318.51 -1.93 -78.71 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.31 Total: 19.76 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 3.32 Total: -54.93 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -1.02 Total: -88.60 kcal Atomic # 8 Polarization: -103.99 SS G_CDS: -6.12 Total: -110.11 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.81 kcal Atomic # 16 Polarization: 111.67 SS G_CDS: -0.30 Total: 111.37 kcal Total: -76.78 -1.93 -78.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572781180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.180 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds