Wall clock time and date at job start Tue Mar 31 2020 07:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47241 * 2 1 4 4 C 1.50703 * 109.47084 * 239.99669 * 2 1 3 5 5 O 1.20829 * 120.00049 * 239.99861 * 4 2 1 6 6 O 1.34231 * 119.99698 * 60.00544 * 4 2 1 7 7 C 1.50708 * 109.46910 * 120.00061 * 2 1 3 8 8 O 1.21276 * 119.99619 * 120.00165 * 7 2 1 9 9 N 1.34775 * 119.99619 * 299.99858 * 7 2 1 10 10 C 1.46498 * 119.99681 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47362 * 179.97438 * 10 9 7 12 12 C 1.38632 * 119.74855 * 269.73233 * 11 10 9 13 13 C 1.37622 * 120.24185 * 179.71996 * 12 11 10 14 14 C 1.40711 * 119.74669 * 0.56508 * 13 12 11 15 15 C 1.41400 * 120.24519 * 179.68031 * 14 13 12 16 16 H 1.07993 * 120.00417 * 204.40825 * 15 14 13 17 17 C 1.39949 * 119.99722 * 24.41101 * 15 14 13 18 18 N 1.30829 * 120.00062 * 17.84366 * 17 15 14 19 19 Si 1.86798 * 120.00043 * 197.84420 * 17 15 14 20 20 H 1.48498 * 109.46821 * 90.00230 * 19 17 15 21 21 H 1.48501 * 109.47257 * 209.99803 * 19 17 15 22 22 H 1.48498 * 109.47318 * 330.00157 * 19 17 15 23 23 C 1.40712 * 119.51307 * 359.70755 * 14 13 12 24 24 C 1.37615 * 119.74605 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.46922 * 300.00178 * 1 2 3 26 26 H 1.09000 * 109.46656 * 60.00039 * 1 2 3 27 27 H 1.08996 * 109.46997 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47426 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47264 * 299.99589 * 3 2 1 30 30 H 1.08995 * 109.47308 * 60.00058 * 3 2 1 31 31 H 0.96704 * 116.99525 * 179.97438 * 6 4 2 32 32 H 0.96996 * 120.00336 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.47068 * 59.99799 * 10 9 7 34 34 H 1.08996 * 109.47220 * 300.00144 * 10 9 7 35 35 H 1.08000 * 119.87692 * 359.96552 * 12 11 10 36 36 H 1.08002 * 120.12182 * 180.27799 * 13 12 11 37 37 H 0.96994 * 119.99970 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.12698 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.87918 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.0323 -0.7105 1.2305 8 8 2.7296 -1.6965 1.1192 9 7 1.7067 -0.2499 2.4546 10 6 2.1954 -0.9402 3.6508 11 6 1.6935 -0.2295 4.8812 12 6 2.4498 0.7860 5.4456 13 6 1.9985 1.4457 6.5660 14 6 0.7701 1.0778 7.1454 15 6 0.2996 1.7440 8.3005 16 1 -0.3931 1.2490 8.9648 17 6 0.7316 3.0449 8.5827 18 7 1.2738 3.7730 7.6406 19 14 0.5340 3.7416 10.3046 20 1 1.7453 3.4318 11.1058 21 1 0.3561 5.2138 10.2254 22 1 -0.6563 3.1332 10.9513 23 6 0.0137 0.0417 6.5672 24 6 0.4813 -0.5997 5.4431 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 2.0542 -0.7407 -3.2088 32 1 1.1494 0.5389 2.5436 33 1 3.2855 -0.9398 3.6506 34 1 1.8325 -1.9680 3.6509 35 1 3.3948 1.0632 5.0022 36 1 2.5872 2.2396 7.0014 37 1 1.5728 4.6747 7.8362 38 1 -0.9303 -0.2490 7.0040 39 1 -0.0977 -1.3950 4.9973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592467931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:46 Heat of formation + Delta-G solvation = -121.412705 kcal Electronic energy + Delta-G solvation = -22626.785596 eV Core-core repulsion = 19112.531691 eV Total energy + Delta-G solvation = -3514.253905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95990 -39.08421 -37.69783 -36.10074 -35.04524 -34.66421 -33.33936 -30.29058 -29.38814 -27.67305 -26.98097 -24.78641 -24.00813 -22.23266 -21.10804 -20.14673 -19.64258 -17.86905 -17.42193 -17.08024 -16.32057 -15.87895 -15.43645 -15.12085 -14.84081 -14.35821 -13.91614 -13.83214 -13.78305 -13.42879 -12.93304 -12.57401 -12.43050 -12.38030 -12.24937 -12.06913 -11.94747 -11.71369 -11.61895 -11.41645 -11.19720 -11.07457 -10.73845 -10.48955 -10.42183 -9.76962 -9.52186 -9.41142 -9.22512 -8.66141 -7.60591 -7.48395 -6.90265 -4.49704 2.16245 2.46216 2.73954 2.82067 2.95255 3.00011 3.03208 3.06505 3.61342 3.83110 4.43298 4.50951 4.66287 4.69519 5.06996 5.33086 5.44234 5.45098 5.51406 5.56951 5.78666 5.87383 5.89206 5.90987 6.20857 6.27799 6.32157 6.39243 6.80140 6.83868 6.94715 7.15117 7.23377 7.48055 7.65586 7.83616 7.87689 7.92720 7.98512 8.16248 8.47315 8.51064 8.75746 8.83370 10.03680 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.003065 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.351784 B = 9134.084730 C = 9434.791806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.140 4.140 4 C 0.483 3.517 5 O -0.469 6.469 6 O -0.518 6.518 7 C 0.512 3.488 8 O -0.512 6.512 9 N -0.712 5.712 10 C 0.186 3.814 11 C -0.246 4.246 12 C -0.081 4.081 13 C -0.169 4.169 14 C 0.117 3.883 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.787 5.787 19 Si 0.909 3.091 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.229 4.229 24 C -0.069 4.069 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.409 0.591 32 H 0.400 0.600 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.282 0.718 38 H 0.093 0.907 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -0.271 -12.949 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.198 4.198 4 C 0.322 3.678 5 O -0.352 6.352 6 O -0.331 6.331 7 C 0.294 3.706 8 O -0.386 6.386 9 N -0.364 5.364 10 C 0.064 3.936 11 C -0.247 4.247 12 C -0.100 4.100 13 C -0.188 4.188 14 C 0.114 3.886 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.734 3.266 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.088 4.088 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.267 0.733 32 H 0.235 0.765 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.794 -0.844 -12.678 12.731 hybrid contribution -0.138 0.529 0.282 0.615 sum -0.933 -0.315 -12.397 12.436 Atomic orbital electron populations 1.21872 0.89681 1.03689 1.04512 1.20553 0.99433 0.97756 0.90118 1.21874 1.02162 0.91222 1.04538 1.22687 0.78103 0.82856 0.84202 1.90863 1.33387 1.24499 1.86413 1.84487 1.72728 1.59277 1.16603 1.19780 0.81533 0.85014 0.84232 1.90825 1.36549 1.25189 1.86052 1.46433 1.53061 1.31991 1.04943 1.19968 0.97771 0.94538 0.81273 1.18977 0.99721 1.05267 1.00783 1.20564 0.97568 0.95343 0.96520 1.21313 0.97108 1.02350 0.98059 1.17671 0.90106 0.89750 0.91077 1.19678 1.23883 0.98217 1.06914 0.90249 1.25949 0.92791 0.96968 0.98583 1.69814 1.29289 1.09056 1.33025 0.86286 0.79987 0.78131 0.82222 1.19165 1.20229 1.18536 1.20973 1.00512 1.03942 0.99476 1.20408 0.94666 0.97817 0.95928 0.90067 0.90108 0.91547 0.91521 0.90114 0.90015 0.73277 0.76489 0.92287 0.92330 0.89380 0.86372 0.90688 0.88903 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.30 37.16 0.31 -1.03 16 2 C -0.07 -0.89 0.81 -156.81 -0.13 -1.02 16 3 C -0.14 -1.37 8.30 37.16 0.31 -1.06 16 4 C 0.48 6.33 6.92 36.01 0.25 6.58 16 5 O -0.47 -8.22 14.94 -26.86 -0.40 -8.62 16 6 O -0.52 -4.65 13.23 -39.26 -0.52 -5.17 16 7 C 0.51 8.21 6.47 -10.98 -0.07 8.14 16 8 O -0.51 -10.48 14.19 -18.95 -0.27 -10.75 16 9 N -0.71 -11.01 5.33 -61.47 -0.33 -11.33 16 10 C 0.19 3.30 5.79 -5.19 -0.03 3.27 16 11 C -0.25 -4.93 5.27 -104.33 -0.55 -5.48 16 12 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 13 C -0.17 -4.11 8.70 -38.87 -0.34 -4.45 16 14 C 0.12 2.93 5.57 -106.83 -0.60 2.33 16 15 C -0.46 -11.52 9.05 -37.74 -0.34 -11.86 16 16 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 17 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.79 -19.17 10.95 55.55 0.61 -18.56 16 19 Si 0.91 17.76 29.60 -169.99 -5.03 12.72 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.23 -5.27 9.80 -38.88 -0.38 -5.65 16 24 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 25 H 0.08 0.71 7.56 -51.93 -0.39 0.31 16 26 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.08 0.74 7.56 -51.93 -0.39 0.34 16 31 H 0.41 1.99 9.10 45.56 0.41 2.40 16 32 H 0.40 5.57 7.30 -40.82 -0.30 5.27 16 33 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 37 H 0.28 6.24 8.30 -40.82 -0.34 5.91 16 38 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -31.02 335.75 -7.64 -38.66 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.34 Total: 10.46 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.42 Total: -12.47 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.28 Total: -29.89 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.19 Total: -24.54 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.02 -7.64 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592467931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.749 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds