Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47241 * 2 1 4 4 C 1.50703 * 109.47084 * 239.99669 * 2 1 3 5 5 O 1.20829 * 120.00049 * 239.99861 * 4 2 1 6 6 O 1.34231 * 119.99698 * 60.00544 * 4 2 1 7 7 C 1.50708 * 109.46910 * 120.00061 * 2 1 3 8 8 O 1.21276 * 119.99619 * 120.00165 * 7 2 1 9 9 N 1.34775 * 119.99619 * 299.99858 * 7 2 1 10 10 C 1.46498 * 119.99681 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47362 * 179.97438 * 10 9 7 12 12 C 1.38632 * 119.74855 * 269.73233 * 11 10 9 13 13 C 1.37622 * 120.24185 * 179.71996 * 12 11 10 14 14 C 1.40711 * 119.74669 * 0.56508 * 13 12 11 15 15 C 1.41400 * 120.24519 * 179.68031 * 14 13 12 16 16 H 1.07993 * 120.00417 * 204.40825 * 15 14 13 17 17 C 1.39949 * 119.99722 * 24.41101 * 15 14 13 18 18 N 1.30829 * 120.00062 * 17.84366 * 17 15 14 19 19 Si 1.86798 * 120.00043 * 197.84420 * 17 15 14 20 20 H 1.48498 * 109.46821 * 90.00230 * 19 17 15 21 21 H 1.48501 * 109.47257 * 209.99803 * 19 17 15 22 22 H 1.48498 * 109.47318 * 330.00157 * 19 17 15 23 23 C 1.40712 * 119.51307 * 359.70755 * 14 13 12 24 24 C 1.37615 * 119.74605 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.46922 * 300.00178 * 1 2 3 26 26 H 1.09000 * 109.46656 * 60.00039 * 1 2 3 27 27 H 1.08996 * 109.46997 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47426 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47264 * 299.99589 * 3 2 1 30 30 H 1.08995 * 109.47308 * 60.00058 * 3 2 1 31 31 H 0.96704 * 116.99525 * 179.97438 * 6 4 2 32 32 H 0.96996 * 120.00336 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.47068 * 59.99799 * 10 9 7 34 34 H 1.08996 * 109.47220 * 300.00144 * 10 9 7 35 35 H 1.08000 * 119.87692 * 359.96552 * 12 11 10 36 36 H 1.08002 * 120.12182 * 180.27799 * 13 12 11 37 37 H 0.96994 * 119.99970 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.12698 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.87918 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.0323 -0.7105 1.2305 8 8 2.7296 -1.6965 1.1192 9 7 1.7067 -0.2499 2.4546 10 6 2.1954 -0.9402 3.6508 11 6 1.6935 -0.2295 4.8812 12 6 2.4498 0.7860 5.4456 13 6 1.9985 1.4457 6.5660 14 6 0.7701 1.0778 7.1454 15 6 0.2996 1.7440 8.3005 16 1 -0.3931 1.2490 8.9648 17 6 0.7316 3.0449 8.5827 18 7 1.2738 3.7730 7.6406 19 14 0.5340 3.7416 10.3046 20 1 1.7453 3.4318 11.1058 21 1 0.3561 5.2138 10.2254 22 1 -0.6563 3.1332 10.9513 23 6 0.0137 0.0417 6.5672 24 6 0.4813 -0.5997 5.4431 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 2.0542 -0.7407 -3.2088 32 1 1.1494 0.5389 2.5436 33 1 3.2855 -0.9398 3.6506 34 1 1.8325 -1.9680 3.6509 35 1 3.3948 1.0632 5.0022 36 1 2.5872 2.2396 7.0014 37 1 1.5728 4.6747 7.8362 38 1 -0.9303 -0.2490 7.0040 39 1 -0.0977 -1.3950 4.9973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592467931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = -140.778333 kcal Electronic energy + Delta-G solvation = -22627.625353 eV Core-core repulsion = 19112.531691 eV Total energy + Delta-G solvation = -3515.093662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04000 -40.31498 -39.37551 -37.08634 -36.26995 -36.05514 -34.91844 -31.96794 -31.15415 -28.61965 -28.42057 -25.82682 -25.49261 -23.43051 -22.87773 -21.81311 -20.84471 -19.22477 -18.82273 -18.23978 -17.44619 -17.16348 -16.88907 -16.34469 -16.16838 -15.85989 -15.51633 -15.32090 -14.83843 -14.67794 -14.20569 -13.98295 -13.81041 -13.49411 -13.35620 -13.32431 -13.16935 -13.10659 -12.82026 -12.71617 -12.53395 -12.46655 -12.32794 -12.08917 -11.50844 -11.44928 -11.27459 -11.05001 -10.64392 -10.04179 -9.38322 -9.26929 -8.65996 -6.35608 0.83972 1.15296 1.17447 1.39967 1.47321 1.52210 1.57874 1.76881 2.20715 2.40643 2.76372 3.48837 3.68255 3.77086 3.79194 4.13941 4.27513 4.31771 4.53106 4.64272 4.65409 4.67189 4.72513 4.78413 4.81985 5.06344 5.15663 5.15843 5.17136 5.36306 5.43038 5.46691 5.60606 5.69822 5.92258 6.10064 6.21512 6.37306 6.56819 6.69226 6.93171 6.98720 7.01799 7.23892 8.30291 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.003065 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.351784 B = 9134.084730 C = 9434.791806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.138 4.138 4 C 0.489 3.511 5 O -0.522 6.522 6 O -0.500 6.500 7 C 0.510 3.490 8 O -0.559 6.559 9 N -0.703 5.703 10 C 0.194 3.806 11 C -0.227 4.227 12 C -0.081 4.081 13 C -0.191 4.191 14 C 0.087 3.913 15 C -0.496 4.496 16 H 0.075 0.925 17 C 0.038 3.962 18 N -0.816 5.816 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.242 4.242 24 C -0.066 4.066 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.429 0.571 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.289 0.711 38 H 0.098 0.902 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 0.502 -14.181 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.195 4.195 4 C 0.330 3.670 5 O -0.409 6.409 6 O -0.314 6.314 7 C 0.295 3.705 8 O -0.436 6.436 9 N -0.356 5.356 10 C 0.071 3.929 11 C -0.229 4.229 12 C -0.100 4.100 13 C -0.210 4.210 14 C 0.085 3.915 15 C -0.525 4.525 16 H 0.094 0.906 17 C -0.178 4.178 18 N -0.442 5.442 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.262 4.262 24 C -0.085 4.085 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.291 0.709 32 H 0.247 0.753 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.709 -0.040 -13.951 14.055 hybrid contribution 0.154 0.213 0.476 0.544 sum -1.556 0.174 -13.475 13.566 Atomic orbital electron populations 1.21934 0.87353 1.03755 1.06374 1.20564 1.01057 0.98197 0.87671 1.21933 1.01556 0.89658 1.06342 1.22858 0.76888 0.81885 0.85413 1.90858 1.35906 1.26866 1.87264 1.84429 1.71988 1.58861 1.16090 1.20442 0.80459 0.84399 0.85204 1.90812 1.38647 1.27406 1.86767 1.46192 1.52947 1.32065 1.04364 1.19753 0.97520 0.94459 0.81144 1.19152 0.98895 1.03898 1.00910 1.20745 0.98278 0.95260 0.95711 1.21254 0.97294 1.03015 0.99455 1.17993 0.90828 0.90880 0.91833 1.19895 1.25401 0.99422 1.07810 0.90648 1.26709 0.92141 0.96762 1.02181 1.69851 1.29970 1.09608 1.34753 0.85242 0.79819 0.77697 0.77234 1.18938 1.19158 1.18305 1.21152 1.00794 1.03937 1.00300 1.20670 0.94916 0.97888 0.95020 0.88979 0.87533 0.92385 0.92577 0.87490 0.89081 0.70933 0.75288 0.92711 0.92184 0.87789 0.88124 0.90001 0.88396 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.30 71.98 0.60 -1.58 16 2 C -0.07 -1.54 0.81 -53.67 -0.04 -1.59 16 3 C -0.14 -2.28 8.30 71.98 0.60 -1.68 16 4 C 0.49 11.97 6.92 71.24 0.49 12.47 16 5 O -0.52 -18.20 14.94 29.71 0.44 -17.75 16 6 O -0.50 -7.47 13.23 -51.42 -0.68 -8.15 16 7 C 0.51 15.74 6.47 87.66 0.57 16.31 16 8 O -0.56 -22.86 14.19 20.42 0.29 -22.57 16 9 N -0.70 -20.50 5.33 -466.78 -2.49 -22.99 16 10 C 0.19 6.60 5.79 85.63 0.50 7.09 16 11 C -0.23 -8.80 5.27 -19.67 -0.10 -8.90 16 12 C -0.08 -3.47 9.67 22.22 0.21 -3.26 16 13 C -0.19 -9.46 8.70 22.73 0.20 -9.26 16 14 C 0.09 4.46 5.57 -21.29 -0.12 4.34 16 15 C -0.50 -25.62 9.05 23.46 0.21 -25.41 16 16 H 0.08 3.78 7.91 -2.91 -0.02 3.76 16 17 C 0.04 1.83 5.14 85.26 0.44 2.27 16 18 N -0.82 -40.45 10.95 21.83 0.24 -40.21 16 19 Si 0.98 36.59 29.60 68.60 2.03 38.62 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 23 C -0.24 -11.12 9.80 22.73 0.22 -10.90 16 24 C -0.07 -2.65 9.67 22.22 0.21 -2.44 16 25 H 0.09 1.28 7.56 -2.39 -0.02 1.26 16 26 H 0.11 1.18 8.11 -2.39 -0.02 1.16 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.24 8.11 -2.39 -0.02 1.22 16 30 H 0.09 1.35 7.56 -2.39 -0.02 1.34 16 31 H 0.43 2.97 9.10 -74.05 -0.67 2.30 16 32 H 0.41 10.43 7.30 -92.71 -0.68 9.76 16 33 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 34 H 0.06 2.06 8.08 -2.39 -0.02 2.05 16 35 H 0.10 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.10 5.28 6.16 -2.91 -0.02 5.26 16 37 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 38 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -69.19 335.75 3.56 -65.64 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.26 Total: 29.95 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.99 Total: -22.54 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -2.25 Total: -63.20 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: 0.05 Total: -48.47 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -69.19 3.56 -65.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592467931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.143 kcal (2) G-P(sol) polarization free energy of solvation -69.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds