Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.88260 * 2 1 4 4 C 1.37960 * 120.20504 * 180.02562 * 3 2 1 5 5 C 1.39605 * 119.96819 * 359.97438 * 4 3 2 6 6 C 1.47866 * 120.11596 * 180.02562 * 5 4 3 7 7 O 1.21547 * 119.99801 * 188.05752 * 6 5 4 8 8 N 1.34778 * 119.99852 * 8.06149 * 6 5 4 9 9 C 1.47423 * 125.64281 * 174.80754 * 8 6 5 10 10 C 1.55391 * 104.87465 * 204.16445 * 9 8 6 11 11 C 1.55158 * 101.36526 * 323.02219 * 10 9 8 12 12 O 1.42899 * 110.71719 * 277.04096 * 11 10 9 13 13 C 1.50693 * 110.72141 * 153.94159 * 11 10 9 14 14 H 1.08001 * 119.99952 * 2.44451 * 13 11 10 15 15 C 1.37882 * 120.00215 * 182.43415 * 13 11 10 16 16 N 1.31516 * 119.99671 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99992 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47200 * 90.00428 * 17 15 13 19 19 H 1.48506 * 109.47132 * 210.00591 * 17 15 13 20 20 H 1.48501 * 109.47351 * 330.00344 * 17 15 13 21 21 C 1.47017 * 125.64908 * 354.84953 * 8 6 5 22 22 C 1.39480 * 119.76245 * 0.27957 * 5 4 3 23 23 C 1.38498 * 119.79247 * 359.44687 * 22 5 4 24 24 O 1.35910 * 119.98279 * 180.25176 * 23 22 5 25 25 H 1.08997 * 109.47167 * 90.00028 * 1 2 3 26 26 H 1.09003 * 109.47007 * 210.00127 * 1 2 3 27 27 H 1.09003 * 109.46553 * 329.99489 * 1 2 3 28 28 H 1.07997 * 119.89193 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.01887 * 179.97438 * 4 3 2 30 30 H 1.08997 * 110.36925 * 323.00113 * 9 8 6 31 31 H 1.09003 * 110.36360 * 85.21499 * 9 8 6 32 32 H 1.09000 * 111.19153 * 204.98094 * 10 9 8 33 33 H 1.09004 * 111.01859 * 80.98386 * 10 9 8 34 34 H 0.96703 * 114.00033 * 177.55928 * 12 11 10 35 35 H 0.97000 * 119.99698 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.88665 * 59.48928 * 21 8 6 37 37 H 1.08996 * 110.01304 * 298.39300 * 21 8 6 38 38 H 1.08002 * 120.10173 * 179.69811 * 22 5 4 39 39 H 0.96704 * 114.00503 * 270.29761 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5756 1.2068 -0.0005 5 6 4.2797 0.0013 -0.0005 6 6 5.7584 0.0058 -0.0005 7 8 6.3693 -1.0346 -0.1481 8 7 6.4287 1.1636 0.1632 9 6 7.8912 1.2988 0.2912 10 6 8.1028 2.6352 1.0554 11 6 6.9691 3.5110 0.4595 12 8 7.3754 4.0866 -0.7837 13 6 6.5575 4.5851 1.4330 14 1 7.0706 4.6826 2.3783 15 6 5.5258 5.4436 1.1169 16 7 4.9008 5.3246 -0.0341 17 14 5.0161 6.7754 2.3233 18 1 5.7953 8.0108 2.0552 19 1 3.5672 7.0596 2.1639 20 1 5.2804 6.3147 3.7101 21 6 5.8226 2.5005 0.2445 22 6 3.5835 -1.2073 -0.0059 23 6 2.1985 -1.2036 0.0004 24 8 1.5162 -2.3790 0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6524 2.1322 0.0004 29 1 4.1106 2.1449 -0.0009 30 1 8.3005 0.4662 0.8633 31 1 8.3554 1.3460 -0.6939 32 1 9.0818 3.0624 0.8383 33 1 7.9674 2.4977 2.1282 34 1 6.6894 4.6133 -1.2162 35 1 4.1748 5.9283 -0.2564 36 1 5.1290 2.5427 1.0841 37 1 5.2965 2.7286 -0.6825 38 1 4.1227 -2.1430 -0.0109 39 1 1.3186 -2.7192 -0.8830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -84.108705 kcal Electronic energy + Delta-G solvation = -23721.333506 eV Core-core repulsion = 20208.697224 eV Total energy + Delta-G solvation = -3512.636282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29555 -39.05123 -37.32268 -36.40261 -34.31750 -32.75661 -32.32249 -30.60685 -29.65689 -28.09684 -26.96861 -25.37516 -23.28157 -22.49480 -21.30794 -19.90130 -19.51664 -18.14190 -17.24127 -16.36199 -16.05352 -15.59677 -15.21510 -15.01961 -14.81416 -14.56649 -14.03389 -13.65601 -13.37718 -13.11953 -13.05954 -13.00042 -12.50560 -12.22065 -12.01331 -11.73663 -11.66982 -11.62760 -11.29866 -11.06972 -10.66574 -10.65368 -10.58890 -10.40955 -10.26862 -9.57071 -9.36617 -8.78711 -8.74231 -8.44547 -8.36636 -7.98943 -6.43383 -4.51100 1.00924 1.42293 3.10515 3.12462 3.20809 3.23900 3.50519 3.97763 4.16138 4.29330 4.78891 4.85049 4.95457 5.06174 5.29448 5.43125 5.51865 5.57997 5.66785 5.72959 5.76483 5.81077 5.92341 6.01344 6.10226 6.17257 6.29521 6.43879 6.54066 6.56305 6.62096 6.69432 6.79678 6.91850 6.98245 7.19882 7.60297 7.64474 7.85730 8.11705 8.51853 8.62393 9.17996 9.28878 10.64461 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.005758 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.341838 B = 4861.795811 C = 6331.846615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.113 4.113 4 C -0.120 4.120 5 C -0.118 4.118 6 C 0.566 3.434 7 O -0.561 6.561 8 N -0.604 5.604 9 C 0.110 3.890 10 C -0.119 4.119 11 C 0.247 3.753 12 O -0.582 6.582 13 C -0.535 4.535 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.900 5.900 17 Si 0.903 3.097 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.080 3.920 22 C -0.086 4.086 23 C 0.082 3.918 24 O -0.495 6.495 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.182 0.818 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.384 0.616 35 H 0.271 0.729 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 -6.722 -1.458 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.137 4.137 5 C -0.121 4.121 6 C 0.356 3.644 7 O -0.442 6.442 8 N -0.335 5.335 9 C -0.012 4.012 10 C -0.156 4.156 11 C 0.206 3.794 12 O -0.392 6.392 13 C -0.573 4.573 14 H 0.086 0.914 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.041 4.041 22 C -0.105 4.105 23 C 0.038 3.962 24 O -0.304 6.304 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.198 0.802 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.260 -7.486 -0.889 9.799 hybrid contribution -1.068 0.983 -0.068 1.453 sum -7.327 -6.503 -0.958 9.844 Atomic orbital electron populations 1.20726 0.90771 1.03225 1.02254 1.20435 0.96713 0.92727 0.99569 1.21017 0.94168 0.97186 1.00730 1.23310 0.95169 1.00737 0.94491 1.19781 0.93105 0.93766 1.05457 1.17912 0.86749 0.82591 0.77165 1.90697 1.69794 1.31664 1.52019 1.48602 1.08422 1.07014 1.69457 1.22312 0.80343 0.98303 1.00288 1.22870 1.00343 0.93329 0.99104 1.19539 0.87455 0.89107 0.83276 1.86138 1.45041 1.70696 1.37291 1.21572 1.17297 1.14888 1.03577 0.91367 1.25046 0.95222 0.97269 0.95588 1.69618 1.23771 1.38746 1.21837 0.86402 0.77739 0.81624 0.81220 1.20317 1.20947 1.19677 1.23568 0.99006 0.80298 1.01255 1.21434 0.92995 0.98385 0.97729 1.18050 0.89330 0.84891 1.03927 1.84818 1.76052 1.36292 1.33224 0.91244 0.90932 0.91278 0.85036 0.80155 0.91558 0.91636 0.90261 0.90416 0.76546 0.91856 0.90274 0.90421 0.84521 0.76029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.78 36.01 0.35 -0.83 16 2 C -0.09 -1.28 5.90 -104.39 -0.62 -1.90 16 3 C -0.11 -1.69 9.67 -39.67 -0.38 -2.08 16 4 C -0.12 -2.08 8.59 -39.17 -0.34 -2.42 16 5 C -0.12 -2.16 5.87 -104.98 -0.62 -2.78 16 6 C 0.57 11.70 7.81 -12.32 -0.10 11.61 16 7 O -0.56 -12.64 16.67 5.32 0.09 -12.56 16 8 N -0.60 -12.36 3.33 -174.86 -0.58 -12.94 16 9 C 0.11 2.12 6.89 -2.27 -0.02 2.10 16 10 C -0.12 -2.34 6.26 -24.32 -0.15 -2.49 16 11 C 0.25 5.56 0.85 -89.94 -0.08 5.48 16 12 O -0.58 -13.81 13.07 -35.23 -0.46 -14.27 16 13 C -0.54 -12.95 8.11 -34.44 -0.28 -13.23 16 14 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 15 C 0.07 1.70 5.27 -17.82 -0.09 1.60 16 16 N -0.90 -21.27 10.96 55.43 0.61 -20.67 16 17 Si 0.90 19.01 29.54 -169.99 -5.02 13.99 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.08 1.69 3.38 -3.06 -0.01 1.68 16 22 C -0.09 -1.42 9.53 -39.02 -0.37 -1.79 16 23 C 0.08 1.18 6.67 -39.28 -0.26 0.92 16 24 O -0.49 -5.94 12.53 -19.46 -0.24 -6.19 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.74 7.52 -51.93 -0.39 0.34 16 27 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.18 3.41 2.77 -57.08 -0.16 3.25 16 30 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.47 8.04 -51.93 -0.42 1.06 16 34 H 0.38 9.16 7.23 45.56 0.33 9.49 16 35 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 36 H 0.08 1.72 6.35 -51.93 -0.33 1.39 16 37 H 0.08 1.69 6.64 -51.93 -0.34 1.34 16 38 H 0.14 2.24 7.67 -52.49 -0.40 1.83 16 39 H 0.38 2.76 9.06 45.56 0.41 3.17 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -27.81 322.02 -7.09 -34.90 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -3.37 Total: 16.99 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.96 Total: -4.12 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.03 Total: -33.60 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.62 Total: -33.01 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.81 -7.09 -34.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.208 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds