Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.88260 * 2 1 4 4 C 1.37960 * 120.20504 * 180.02562 * 3 2 1 5 5 C 1.39605 * 119.96819 * 359.97438 * 4 3 2 6 6 C 1.47866 * 120.11596 * 180.02562 * 5 4 3 7 7 O 1.21547 * 119.99801 * 188.05752 * 6 5 4 8 8 N 1.34778 * 119.99852 * 8.06149 * 6 5 4 9 9 C 1.47423 * 125.64281 * 174.80754 * 8 6 5 10 10 C 1.55391 * 104.87465 * 204.16445 * 9 8 6 11 11 C 1.55158 * 101.36526 * 323.02219 * 10 9 8 12 12 O 1.42899 * 110.71719 * 277.04096 * 11 10 9 13 13 C 1.50693 * 110.72141 * 153.94159 * 11 10 9 14 14 H 1.08001 * 119.99952 * 2.44451 * 13 11 10 15 15 C 1.37882 * 120.00215 * 182.43415 * 13 11 10 16 16 N 1.31516 * 119.99671 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99992 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47200 * 90.00428 * 17 15 13 19 19 H 1.48506 * 109.47132 * 210.00591 * 17 15 13 20 20 H 1.48501 * 109.47351 * 330.00344 * 17 15 13 21 21 C 1.47017 * 125.64908 * 354.84953 * 8 6 5 22 22 C 1.39480 * 119.76245 * 0.27957 * 5 4 3 23 23 C 1.38498 * 119.79247 * 359.44687 * 22 5 4 24 24 O 1.35910 * 119.98279 * 180.25176 * 23 22 5 25 25 H 1.08997 * 109.47167 * 90.00028 * 1 2 3 26 26 H 1.09003 * 109.47007 * 210.00127 * 1 2 3 27 27 H 1.09003 * 109.46553 * 329.99489 * 1 2 3 28 28 H 1.07997 * 119.89193 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.01887 * 179.97438 * 4 3 2 30 30 H 1.08997 * 110.36925 * 323.00113 * 9 8 6 31 31 H 1.09003 * 110.36360 * 85.21499 * 9 8 6 32 32 H 1.09000 * 111.19153 * 204.98094 * 10 9 8 33 33 H 1.09004 * 111.01859 * 80.98386 * 10 9 8 34 34 H 0.96703 * 114.00033 * 177.55928 * 12 11 10 35 35 H 0.97000 * 119.99698 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.88665 * 59.48928 * 21 8 6 37 37 H 1.08996 * 110.01304 * 298.39300 * 21 8 6 38 38 H 1.08002 * 120.10173 * 179.69811 * 22 5 4 39 39 H 0.96704 * 114.00503 * 270.29761 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5756 1.2068 -0.0005 5 6 4.2797 0.0013 -0.0005 6 6 5.7584 0.0058 -0.0005 7 8 6.3693 -1.0346 -0.1481 8 7 6.4287 1.1636 0.1632 9 6 7.8912 1.2988 0.2912 10 6 8.1028 2.6352 1.0554 11 6 6.9691 3.5110 0.4595 12 8 7.3754 4.0866 -0.7837 13 6 6.5575 4.5851 1.4330 14 1 7.0706 4.6826 2.3783 15 6 5.5258 5.4436 1.1169 16 7 4.9008 5.3246 -0.0341 17 14 5.0161 6.7754 2.3233 18 1 5.7953 8.0108 2.0552 19 1 3.5672 7.0596 2.1639 20 1 5.2804 6.3147 3.7101 21 6 5.8226 2.5005 0.2445 22 6 3.5835 -1.2073 -0.0059 23 6 2.1985 -1.2036 0.0004 24 8 1.5162 -2.3790 0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6524 2.1322 0.0004 29 1 4.1106 2.1449 -0.0009 30 1 8.3005 0.4662 0.8633 31 1 8.3554 1.3460 -0.6939 32 1 9.0818 3.0624 0.8383 33 1 7.9674 2.4977 2.1282 34 1 6.6894 4.6133 -1.2162 35 1 4.1748 5.9283 -0.2564 36 1 5.1290 2.5427 1.0841 37 1 5.2965 2.7286 -0.6825 38 1 4.1227 -2.1430 -0.0109 39 1 1.3186 -2.7192 -0.8830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -103.845265 kcal Electronic energy + Delta-G solvation = -23722.189348 eV Core-core repulsion = 20208.697224 eV Total energy + Delta-G solvation = -3513.492124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71649 -40.39065 -38.99188 -37.54581 -36.06539 -34.20038 -33.89467 -32.09886 -31.01334 -29.68354 -28.18673 -27.10546 -24.76679 -23.74145 -22.60828 -21.55510 -20.99330 -19.47087 -18.98714 -17.83077 -17.55848 -16.84859 -16.76804 -16.64446 -16.15105 -16.04165 -15.49394 -14.92718 -14.83339 -14.73290 -14.65498 -14.18039 -13.92804 -13.46993 -13.42724 -13.18726 -13.15056 -12.83626 -12.80866 -12.62651 -12.33078 -12.28131 -12.12702 -11.91410 -11.73018 -11.13648 -11.08352 -10.59788 -10.16093 -10.00190 -9.67719 -9.56530 -8.24218 -6.38185 -0.27138 0.21789 1.45064 1.49887 1.56966 1.67757 1.96026 2.41656 2.66672 3.01453 3.18573 3.45675 3.76980 3.85442 3.91155 3.98940 4.11989 4.17079 4.29254 4.34120 4.54261 4.62203 4.68539 4.76265 4.81773 4.88539 4.88865 5.05867 5.11948 5.21731 5.24481 5.27512 5.33893 5.44618 5.46910 5.75725 5.77227 6.05419 6.47907 6.66612 6.79415 7.00670 7.32386 7.41500 8.82479 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.005758 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.341838 B = 4861.795811 C = 6331.846615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.132 4.132 5 C -0.141 4.141 6 C 0.561 3.439 7 O -0.586 6.586 8 N -0.608 5.608 9 C 0.110 3.890 10 C -0.112 4.112 11 C 0.232 3.768 12 O -0.590 6.590 13 C -0.558 4.558 14 H 0.062 0.938 15 C 0.040 3.960 16 N -0.908 5.908 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.279 1.279 20 H -0.274 1.274 21 C 0.103 3.897 22 C -0.096 4.096 23 C 0.094 3.906 24 O -0.495 6.495 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.379 0.621 35 H 0.275 0.725 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.132 0.868 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -6.961 -1.203 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.353 3.647 7 O -0.470 6.470 8 N -0.339 5.339 9 C -0.012 4.012 10 C -0.150 4.150 11 C 0.191 3.809 12 O -0.399 6.399 13 C -0.596 4.596 14 H 0.080 0.920 15 C -0.162 4.162 16 N -0.547 5.547 17 Si 0.782 3.218 18 H -0.206 1.206 19 H -0.204 1.204 20 H -0.198 1.198 21 C -0.019 4.019 22 C -0.115 4.115 23 C 0.049 3.951 24 O -0.307 6.307 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.180 0.820 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.302 -7.735 -0.653 11.366 hybrid contribution -0.516 1.000 -0.181 1.139 sum -8.818 -6.735 -0.834 11.128 Atomic orbital electron populations 1.20815 0.87840 1.04126 1.03897 1.20795 0.98686 0.91725 0.97235 1.21218 0.93157 0.98670 1.00147 1.23096 0.96348 0.99517 0.95953 1.19667 0.91715 0.94949 1.08049 1.18365 0.87908 0.82087 0.76380 1.90662 1.70621 1.32312 1.53378 1.48674 1.08869 1.06872 1.69458 1.22353 0.79973 0.98507 1.00383 1.22847 0.99911 0.92871 0.99341 1.19751 0.89012 0.89399 0.82691 1.86130 1.45105 1.70782 1.37858 1.21749 1.17993 1.16056 1.03839 0.91970 1.25593 0.95140 0.98638 0.96858 1.69674 1.23666 1.38972 1.22394 0.85587 0.77457 0.79325 0.79442 1.20579 1.20387 1.19850 1.23224 0.98105 0.80266 1.00304 1.21486 0.94170 0.97475 0.98383 1.18026 0.88549 0.86061 1.02458 1.84762 1.75333 1.35258 1.35393 0.89042 0.90259 0.90179 0.83291 0.82032 0.90394 0.91751 0.89378 0.89766 0.77022 0.91584 0.91187 0.91443 0.84997 0.73151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.78 71.24 0.70 -1.16 16 2 C -0.08 -2.06 5.90 -19.72 -0.12 -2.18 16 3 C -0.11 -3.24 9.67 22.21 0.21 -3.02 16 4 C -0.13 -4.59 8.59 22.53 0.19 -4.40 16 5 C -0.14 -5.22 5.87 -20.10 -0.12 -5.34 16 6 C 0.56 23.71 7.81 86.79 0.68 24.39 16 7 O -0.59 -26.97 16.67 -3.86 -0.06 -27.03 16 8 N -0.61 -25.37 3.33 -825.41 -2.75 -28.11 16 9 C 0.11 4.26 6.89 87.03 0.60 4.86 16 10 C -0.11 -4.42 6.26 32.16 0.20 -4.21 16 11 C 0.23 10.55 0.85 -10.35 -0.01 10.54 16 12 O -0.59 -28.36 13.07 -148.98 -1.95 -30.30 16 13 C -0.56 -27.16 8.11 25.60 0.21 -26.96 16 14 H 0.06 3.03 7.77 -2.91 -0.02 3.00 16 15 C 0.04 1.87 5.27 84.66 0.45 2.31 16 16 N -0.91 -42.84 10.96 21.45 0.23 -42.61 16 17 Si 0.96 38.56 29.54 68.60 2.03 40.59 16 18 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.10 4.44 3.38 86.73 0.29 4.73 16 22 C -0.10 -3.11 9.53 22.63 0.22 -2.90 16 23 C 0.09 2.50 6.67 22.47 0.15 2.65 16 24 O -0.49 -10.37 12.53 -92.54 -1.16 -11.53 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.27 7.52 -2.39 -0.02 1.26 16 27 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.16 6.26 2.77 -7.22 -0.02 6.24 16 30 H 0.08 2.82 8.09 -2.39 -0.02 2.81 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.08 3.18 8.04 -2.39 -0.02 3.16 16 34 H 0.38 18.48 7.23 -74.06 -0.54 17.94 16 35 H 0.27 12.33 8.31 -92.71 -0.77 11.56 16 36 H 0.07 3.13 6.35 -2.39 -0.02 3.12 16 37 H 0.07 3.03 6.64 -2.39 -0.02 3.02 16 38 H 0.13 4.33 7.67 -2.91 -0.02 4.31 16 39 H 0.41 4.42 9.06 -74.05 -0.67 3.75 16 Total: -1.00 -58.88 322.02 -0.11 -58.99 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.11 Total: 40.68 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 3.65 Total: -0.68 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.51 Total: -70.72 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: -3.17 Total: -68.86 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -58.88 -0.11 -58.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.851 kcal (2) G-P(sol) polarization free energy of solvation -58.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds