Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38091 * 119.96053 * 2 1 4 4 C 1.38501 * 120.39324 * 180.25420 * 3 2 1 5 5 C 1.37837 * 120.29843 * 359.48698 * 4 3 2 6 6 C 1.39664 * 119.90471 * 0.53625 * 5 4 3 7 7 C 1.47542 * 120.19081 * 179.69716 * 6 5 4 8 8 O 1.21588 * 119.99916 * 132.86560 * 7 6 5 9 9 N 1.34772 * 120.00151 * 312.87067 * 7 6 5 10 10 C 1.47020 * 125.64737 * 4.86015 * 9 7 6 11 11 C 1.54321 * 107.27580 * 181.02485 * 10 9 7 12 12 C 1.55158 * 102.93845 * 22.19418 * 11 10 9 13 13 O 1.42897 * 111.00641 * 82.57134 * 12 11 10 14 14 C 1.50702 * 111.00623 * 206.38694 * 12 11 10 15 15 H 1.07999 * 119.99959 * 0.02562 * 14 12 11 16 16 C 1.37876 * 120.00319 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99732 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00200 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47380 * 89.99827 * 18 16 14 20 20 H 1.48498 * 109.47009 * 209.99933 * 18 16 14 21 21 H 1.48504 * 109.46885 * 329.99962 * 18 16 14 22 22 C 1.47421 * 125.64965 * 184.55650 * 9 7 6 23 23 C 1.38668 * 119.95513 * 180.02562 * 2 1 3 24 24 O 1.35658 * 120.14891 * 0.02631 * 23 2 1 25 25 H 1.08998 * 109.47364 * 89.99537 * 1 2 3 26 26 H 1.08997 * 109.47394 * 209.99583 * 1 2 3 27 27 H 1.08996 * 109.46913 * 329.99802 * 1 2 3 28 28 H 1.08000 * 119.80531 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.85275 * 179.74897 * 4 3 2 30 30 H 1.07996 * 120.04631 * 180.23395 * 5 4 3 31 31 H 1.09006 * 109.88777 * 300.44250 * 10 9 7 32 32 H 1.09003 * 109.88267 * 61.45311 * 10 9 7 33 33 H 1.08997 * 110.72368 * 140.55469 * 11 10 9 34 34 H 1.08999 * 110.72124 * 263.83574 * 11 10 9 35 35 H 0.96700 * 114.00387 * 179.97438 * 13 12 11 36 36 H 0.97008 * 119.99643 * 180.02562 * 17 16 14 37 37 H 1.08996 * 110.36519 * 274.73940 * 22 9 7 38 38 H 1.08993 * 110.36845 * 37.06732 * 22 9 7 39 39 H 0.96697 * 114.00068 * 90.00054 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0053 5 6 4.2860 0.0221 0.0000 6 6 3.6011 -1.1952 -0.0005 7 6 4.3488 -2.4671 -0.0016 8 8 4.0396 -3.3547 0.7698 9 7 5.3746 -2.6452 -0.8574 10 6 5.9172 -1.6265 -1.7682 11 6 7.0594 -2.2883 -2.5676 12 6 6.7240 -3.7998 -2.4662 13 8 5.7508 -4.1752 -3.4429 14 6 7.9685 -4.6394 -2.5976 15 1 8.9278 -4.1643 -2.7411 16 6 7.8829 -6.0140 -2.5337 17 7 6.7150 -6.5925 -2.3575 18 14 9.4257 -7.0546 -2.6959 19 1 10.0163 -7.2771 -1.3517 20 1 9.0784 -8.3628 -3.3068 21 1 10.4088 -6.3510 -3.5583 22 6 6.1423 -3.8916 -1.0310 23 6 2.1994 -1.2014 -0.0005 24 8 1.5232 -2.3775 -0.0016 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 1.6528 2.1295 -0.0004 29 1 4.1121 2.1476 -0.0094 30 1 5.3658 0.0350 -0.0003 31 1 5.1377 -1.2850 -2.4492 32 1 6.3031 -0.7840 -1.1943 33 1 7.0444 -1.9588 -3.6064 34 1 8.0249 -2.0760 -2.1084 35 1 5.5096 -5.1113 -3.4184 36 1 6.6548 -7.5596 -2.3122 37 1 6.9457 -3.9476 -0.2965 38 1 5.4857 -4.7570 -0.9429 39 1 1.3276 -2.7179 -0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -98.957453 kcal Electronic energy + Delta-G solvation = -23669.706452 eV Core-core repulsion = 20156.426280 eV Total energy + Delta-G solvation = -3513.280172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.35113 -38.78656 -37.01459 -36.61197 -34.30677 -32.81270 -32.17314 -30.51637 -29.74287 -27.92968 -26.86679 -25.40499 -23.65936 -22.19166 -21.57529 -19.69705 -19.08399 -18.12534 -17.25183 -16.64160 -16.12443 -15.84069 -15.21551 -14.97596 -14.67410 -14.56961 -14.15527 -13.58830 -13.40208 -13.07427 -13.03625 -12.83525 -12.51022 -12.32704 -12.01451 -11.85733 -11.62820 -11.50320 -11.44806 -11.06274 -10.78696 -10.64712 -10.51599 -10.49440 -10.20292 -9.48117 -9.32622 -8.82990 -8.70807 -8.59539 -8.39262 -7.78111 -6.31564 -4.41131 0.98784 1.19643 3.10066 3.19117 3.26970 3.29304 3.52494 3.76977 4.22219 4.24306 4.69271 4.76589 4.85015 4.96262 5.11434 5.28946 5.39701 5.43403 5.47418 5.58449 5.68848 5.73662 5.83395 6.01320 6.04246 6.10883 6.23342 6.33570 6.38947 6.47592 6.68552 6.71292 6.83166 6.98177 7.23244 7.31159 7.71860 7.72084 7.96522 8.19842 8.61805 8.73797 9.28716 9.42834 10.75831 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030348 B = 0.004179 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.398337 B = 6697.822798 C = 7098.342978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.131 4.131 5 C -0.083 4.083 6 C -0.137 4.137 7 C 0.563 3.437 8 O -0.531 6.531 9 N -0.604 5.604 10 C 0.104 3.896 11 C -0.119 4.119 12 C 0.250 3.750 13 O -0.584 6.584 14 C -0.539 4.539 15 H 0.068 0.932 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.094 3.906 23 C 0.152 3.848 24 O -0.481 6.481 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.386 0.614 36 H 0.272 0.728 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 14.562 1.387 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.149 4.149 5 C -0.102 4.102 6 C -0.140 4.140 7 C 0.350 3.650 8 O -0.408 6.408 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.157 4.157 12 C 0.209 3.791 13 O -0.394 6.394 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.027 4.027 23 C 0.106 3.894 24 O -0.291 6.291 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.907 14.570 2.316 16.738 hybrid contribution 0.802 -1.239 -0.363 1.520 sum -7.104 13.331 1.954 15.231 Atomic orbital electron populations 1.20674 0.90400 1.03258 1.02333 1.20160 0.96859 0.92226 1.02878 1.21024 0.94194 0.97050 0.98988 1.21048 0.94113 0.97967 1.01819 1.21343 1.00414 0.90949 0.97492 1.20488 0.93683 0.94533 1.05319 1.17700 0.79783 0.86599 0.80919 1.90795 1.67268 1.43519 1.39257 1.48676 1.31846 1.15447 1.37698 1.22132 0.96866 0.90903 0.92036 1.22649 0.96450 0.97066 0.99534 1.19621 0.86867 0.89373 0.83210 1.86057 1.62168 1.33027 1.58188 1.21505 0.93577 0.91329 1.51298 0.91429 1.25082 0.96811 0.98061 0.93249 1.69565 1.23627 1.11233 1.49007 0.86379 0.82556 0.79395 0.78449 1.20376 1.20956 1.19657 1.23348 0.94241 0.84763 1.00365 1.18238 0.88115 0.85457 0.97607 1.84773 1.75614 1.35527 1.33143 0.91278 0.90720 0.91487 0.85527 0.85349 0.84869 0.92211 0.92589 0.90640 0.90411 0.76173 0.91834 0.92088 0.90002 0.75227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.79 36.00 0.35 -0.68 16 2 C -0.12 -1.48 5.89 -104.52 -0.62 -2.09 16 3 C -0.09 -0.99 9.68 -39.54 -0.38 -1.38 16 4 C -0.13 -1.43 10.02 -39.63 -0.40 -1.82 16 5 C -0.08 -1.14 8.52 -39.20 -0.33 -1.47 16 6 C -0.14 -2.31 5.43 -104.84 -0.57 -2.88 16 7 C 0.56 11.87 7.14 -12.47 -0.09 11.78 16 8 O -0.53 -13.29 16.75 -5.74 -0.10 -13.38 16 9 N -0.60 -12.61 3.32 -171.61 -0.57 -13.18 16 10 C 0.10 1.81 5.64 -3.07 -0.02 1.80 16 11 C -0.12 -2.32 6.12 -24.90 -0.15 -2.47 16 12 C 0.25 5.99 0.89 -89.50 -0.08 5.91 16 13 O -0.58 -14.82 13.19 -35.23 -0.46 -15.29 16 14 C -0.54 -13.85 8.25 -34.44 -0.28 -14.13 16 15 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 16 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 17 N -0.90 -23.75 10.72 55.43 0.59 -23.16 16 18 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 C 0.09 2.27 5.63 -2.41 -0.01 2.25 16 23 C 0.15 2.36 6.66 -38.69 -0.26 2.10 16 24 O -0.48 -7.61 11.54 -29.70 -0.34 -7.95 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.13 1.67 5.90 -52.49 -0.31 1.36 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.81 5.96 -51.93 -0.31 0.50 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 35 H 0.39 10.17 6.93 45.56 0.32 10.49 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.06 1.50 8.04 -51.93 -0.42 1.09 16 38 H 0.08 2.22 7.69 -51.93 -0.40 1.82 16 39 H 0.39 4.67 9.06 45.56 0.41 5.08 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -31.55 325.16 -7.53 -39.08 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -3.59 Total: 15.17 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.93 Total: -1.35 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.02 Total: -36.33 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.90 Total: -36.62 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.55 -7.53 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.881 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds