Wall clock time and date at job start Tue Mar 31 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38091 * 119.96053 * 2 1 4 4 C 1.38501 * 120.39324 * 180.25420 * 3 2 1 5 5 C 1.37837 * 120.29843 * 359.48698 * 4 3 2 6 6 C 1.39664 * 119.90471 * 0.53625 * 5 4 3 7 7 C 1.47542 * 120.19081 * 179.69716 * 6 5 4 8 8 O 1.21588 * 119.99916 * 132.86560 * 7 6 5 9 9 N 1.34772 * 120.00151 * 312.87067 * 7 6 5 10 10 C 1.47020 * 125.64737 * 4.86015 * 9 7 6 11 11 C 1.54321 * 107.27580 * 181.02485 * 10 9 7 12 12 C 1.55158 * 102.93845 * 22.19418 * 11 10 9 13 13 O 1.42897 * 111.00641 * 82.57134 * 12 11 10 14 14 C 1.50702 * 111.00623 * 206.38694 * 12 11 10 15 15 H 1.07999 * 119.99959 * 0.02562 * 14 12 11 16 16 C 1.37876 * 120.00319 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99732 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00200 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47380 * 89.99827 * 18 16 14 20 20 H 1.48498 * 109.47009 * 209.99933 * 18 16 14 21 21 H 1.48504 * 109.46885 * 329.99962 * 18 16 14 22 22 C 1.47421 * 125.64965 * 184.55650 * 9 7 6 23 23 C 1.38668 * 119.95513 * 180.02562 * 2 1 3 24 24 O 1.35658 * 120.14891 * 0.02631 * 23 2 1 25 25 H 1.08998 * 109.47364 * 89.99537 * 1 2 3 26 26 H 1.08997 * 109.47394 * 209.99583 * 1 2 3 27 27 H 1.08996 * 109.46913 * 329.99802 * 1 2 3 28 28 H 1.08000 * 119.80531 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.85275 * 179.74897 * 4 3 2 30 30 H 1.07996 * 120.04631 * 180.23395 * 5 4 3 31 31 H 1.09006 * 109.88777 * 300.44250 * 10 9 7 32 32 H 1.09003 * 109.88267 * 61.45311 * 10 9 7 33 33 H 1.08997 * 110.72368 * 140.55469 * 11 10 9 34 34 H 1.08999 * 110.72124 * 263.83574 * 11 10 9 35 35 H 0.96700 * 114.00387 * 179.97438 * 13 12 11 36 36 H 0.97008 * 119.99643 * 180.02562 * 17 16 14 37 37 H 1.08996 * 110.36519 * 274.73940 * 22 9 7 38 38 H 1.08993 * 110.36845 * 37.06732 * 22 9 7 39 39 H 0.96697 * 114.00068 * 90.00054 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0053 5 6 4.2860 0.0221 0.0000 6 6 3.6011 -1.1952 -0.0005 7 6 4.3488 -2.4671 -0.0016 8 8 4.0396 -3.3547 0.7698 9 7 5.3746 -2.6452 -0.8574 10 6 5.9172 -1.6265 -1.7682 11 6 7.0594 -2.2883 -2.5676 12 6 6.7240 -3.7998 -2.4662 13 8 5.7508 -4.1752 -3.4429 14 6 7.9685 -4.6394 -2.5976 15 1 8.9278 -4.1643 -2.7411 16 6 7.8829 -6.0140 -2.5337 17 7 6.7150 -6.5925 -2.3575 18 14 9.4257 -7.0546 -2.6959 19 1 10.0163 -7.2771 -1.3517 20 1 9.0784 -8.3628 -3.3068 21 1 10.4088 -6.3510 -3.5583 22 6 6.1423 -3.8916 -1.0310 23 6 2.1994 -1.2014 -0.0005 24 8 1.5232 -2.3775 -0.0016 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 1.6528 2.1295 -0.0004 29 1 4.1121 2.1476 -0.0094 30 1 5.3658 0.0350 -0.0003 31 1 5.1377 -1.2850 -2.4492 32 1 6.3031 -0.7840 -1.1943 33 1 7.0444 -1.9588 -3.6064 34 1 8.0249 -2.0760 -2.1084 35 1 5.5096 -5.1113 -3.4184 36 1 6.6548 -7.5596 -2.3122 37 1 6.9457 -3.9476 -0.2965 38 1 5.4857 -4.7570 -0.9429 39 1 1.3276 -2.7179 -0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:54 Heat of formation + Delta-G solvation = -122.681592 kcal Electronic energy + Delta-G solvation = -23670.735208 eV Core-core repulsion = 20156.426280 eV Total energy + Delta-G solvation = -3514.308928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63906 -40.23316 -38.74565 -37.70706 -36.11857 -34.18203 -33.82844 -31.96876 -31.02188 -29.64628 -27.82378 -27.15916 -25.14080 -23.49754 -22.62532 -21.50257 -20.53087 -19.26594 -19.16642 -18.13720 -17.38806 -17.06314 -16.95830 -16.53474 -16.20453 -16.07656 -15.39821 -14.89260 -14.77314 -14.69143 -14.43804 -14.15221 -13.78010 -13.52202 -13.38144 -13.20827 -13.13996 -12.86294 -12.83314 -12.56213 -12.34494 -12.33439 -12.24383 -12.10250 -11.67408 -11.26687 -10.95063 -10.67090 -10.35184 -9.87036 -9.56644 -9.48865 -8.28356 -6.45581 -0.07781 0.25177 1.41190 1.43178 1.53273 1.64432 2.05386 2.37144 2.63005 2.98142 3.20258 3.47516 3.75817 3.79606 4.01645 4.09463 4.14981 4.27169 4.35779 4.37441 4.60192 4.67031 4.69424 4.75831 4.82855 4.87733 4.97944 5.05040 5.23425 5.26936 5.29453 5.36795 5.40393 5.42898 5.48487 5.73642 5.84557 6.00863 6.55872 6.64805 6.69379 7.10139 7.27265 7.35681 8.77516 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.030348 B = 0.004179 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.398337 B = 6697.822798 C = 7098.342978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.122 4.122 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.087 4.087 6 C -0.170 4.170 7 C 0.559 3.441 8 O -0.588 6.588 9 N -0.607 5.607 10 C 0.107 3.893 11 C -0.113 4.113 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.557 4.557 15 H 0.073 0.927 16 C 0.024 3.976 17 N -0.920 5.920 18 Si 0.967 3.033 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.106 3.894 23 C 0.125 3.875 24 O -0.503 6.503 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.377 0.623 36 H 0.271 0.729 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 18.434 0.907 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.098 4.098 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.174 4.174 7 C 0.349 3.651 8 O -0.469 6.469 9 N -0.338 5.338 10 C -0.014 4.014 11 C -0.151 4.151 12 C 0.193 3.807 13 O -0.399 6.399 14 C -0.595 4.595 15 H 0.091 0.909 16 C -0.176 4.176 17 N -0.560 5.560 18 Si 0.792 3.208 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.017 4.017 23 C 0.080 3.920 24 O -0.314 6.314 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.187 0.813 29 H 0.187 0.813 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.713 18.493 1.806 20.118 hybrid contribution 0.684 -2.373 -0.202 2.478 sum -7.029 16.120 1.604 17.659 Atomic orbital electron populations 1.20724 0.88511 1.03735 1.03433 1.20491 0.98306 0.91535 1.01947 1.21567 0.94400 0.97792 0.96023 1.21501 0.94438 0.98279 0.99383 1.21503 1.00981 0.90614 0.97488 1.20312 0.94132 0.93345 1.09565 1.18494 0.79281 0.87726 0.79623 1.90741 1.68671 1.46015 1.41515 1.48730 1.31860 1.15007 1.38236 1.22312 0.96449 0.90736 0.91947 1.22668 0.97932 0.93538 1.00925 1.19877 0.86004 0.92302 0.82480 1.86046 1.62739 1.32291 1.58790 1.21866 0.94418 0.91993 1.51209 0.90886 1.25867 0.99431 0.99326 0.92980 1.69690 1.25394 1.11271 1.49667 0.85412 0.79304 0.77740 0.78333 1.20327 1.20937 1.18642 1.22928 0.93169 0.85084 1.00526 1.18617 0.87938 0.86347 0.99146 1.84734 1.75781 1.36633 1.34300 0.89796 0.92286 0.88947 0.81349 0.81265 0.84035 0.91127 0.88535 0.89422 0.88893 0.77236 0.92001 0.93635 0.94409 0.74234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.79 71.24 0.70 -1.04 16 2 C -0.12 -2.67 5.89 -19.80 -0.12 -2.79 16 3 C -0.08 -1.29 9.68 22.30 0.22 -1.07 16 4 C -0.12 -1.98 10.02 22.24 0.22 -1.76 16 5 C -0.09 -2.14 8.52 22.52 0.19 -1.95 16 6 C -0.17 -5.72 5.43 -20.01 -0.11 -5.83 16 7 C 0.56 24.56 7.14 86.70 0.62 25.18 16 8 O -0.59 -31.52 16.75 6.55 0.11 -31.41 16 9 N -0.61 -25.95 3.32 -815.11 -2.71 -28.66 16 10 C 0.11 3.57 5.64 86.73 0.49 4.06 16 11 C -0.11 -4.24 6.12 31.78 0.19 -4.04 16 12 C 0.23 11.42 0.89 -10.07 -0.01 11.41 16 13 O -0.59 -30.83 13.19 -148.98 -1.97 -32.79 16 14 C -0.56 -28.96 8.25 25.60 0.21 -28.75 16 15 H 0.07 3.63 7.76 -2.91 -0.02 3.60 16 16 C 0.02 1.28 5.29 84.65 0.45 1.73 16 17 N -0.92 -50.88 10.72 21.45 0.23 -50.65 16 18 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 C 0.11 5.36 5.63 86.93 0.49 5.85 16 23 C 0.13 3.87 6.66 22.84 0.15 4.02 16 24 O -0.50 -16.78 11.54 -79.19 -0.91 -17.69 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.15 7.53 -2.39 -0.02 1.13 16 27 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 28 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.14 3.09 5.90 -2.91 -0.02 3.08 16 31 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.10 2.46 5.96 -2.39 -0.01 2.45 16 33 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 3.18 8.01 -2.39 -0.02 3.16 16 35 H 0.38 20.91 6.93 -74.06 -0.51 20.39 16 36 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 37 H 0.05 2.38 8.04 -2.39 -0.02 2.36 16 38 H 0.04 2.21 7.69 -2.39 -0.02 2.19 16 39 H 0.40 10.43 9.06 -74.06 -0.67 9.76 16 Total: -1.00 -73.67 325.16 0.39 -73.28 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.09 Total: 39.04 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 3.70 Total: 5.01 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -2.48 Total: -79.31 kcal Atomic # 8 Polarization: -79.12 SS G_CDS: -2.77 Total: -81.89 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -73.67 0.39 -73.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.398 kcal (2) G-P(sol) polarization free energy of solvation -73.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds