Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38539 * 119.80770 * 2 1 4 4 C 1.37793 * 120.30376 * 179.97438 * 3 2 1 5 5 C 1.39701 * 119.90303 * 359.76825 * 4 3 2 6 6 C 1.47541 * 120.19197 * 180.24970 * 5 4 3 7 7 O 1.21590 * 119.99761 * 132.95301 * 6 5 4 8 8 N 1.34775 * 120.00313 * 312.96185 * 6 5 4 9 9 C 1.47023 * 125.64399 * 4.85484 * 8 6 5 10 10 C 1.54328 * 107.26947 * 181.02866 * 9 8 6 11 11 C 1.55157 * 102.94173 * 22.19243 * 10 9 8 12 12 O 1.42900 * 111.00398 * 82.57235 * 11 10 9 13 13 C 1.50700 * 111.00463 * 206.38606 * 11 10 9 14 14 H 1.08003 * 119.99696 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00063 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99852 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00084 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47408 * 59.99580 * 17 15 13 19 19 H 1.48504 * 109.47209 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47167 * 299.99771 * 17 15 13 21 21 C 1.47414 * 125.65088 * 184.55661 * 8 6 5 22 22 C 1.40137 * 119.61987 * 0.50068 * 5 4 3 23 23 O 1.35651 * 120.15044 * 179.74801 * 22 5 4 24 24 C 1.38060 * 119.80327 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46775 * 269.98183 * 1 2 3 26 26 H 1.08997 * 109.46981 * 29.97895 * 1 2 3 27 27 H 1.08999 * 109.46981 * 149.98138 * 1 2 3 28 28 H 1.08002 * 119.84862 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.04839 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.88494 * 300.44441 * 9 8 6 31 31 H 1.09000 * 109.88407 * 61.61269 * 9 8 6 32 32 H 1.08996 * 110.71761 * 140.55770 * 10 9 8 33 33 H 1.09000 * 110.71973 * 263.65581 * 10 9 8 34 34 H 0.96694 * 114.00143 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99986 * 180.02562 * 16 15 13 36 36 H 1.09006 * 110.36768 * 274.74228 * 21 8 6 37 37 H 1.09002 * 110.36825 * 37.05981 * 21 8 6 38 38 H 0.96705 * 114.00510 * 269.72389 * 23 22 5 39 39 H 1.08001 * 119.95800 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2021 0.0000 4 6 3.5736 1.2140 0.0005 5 6 4.2805 0.0091 0.0060 6 6 5.7559 0.0144 0.0121 7 8 6.3631 -0.6993 0.7869 8 7 6.4305 0.8105 -0.8408 9 6 5.8282 1.7918 -1.7551 10 6 6.9792 2.4448 -2.5492 11 6 8.1156 1.3939 -2.4416 12 8 7.9545 0.3636 -3.4186 13 6 9.4682 2.0463 -2.5667 14 1 9.5414 3.1142 -2.7105 15 6 10.6123 1.2799 -2.4978 16 7 10.5231 -0.0204 -2.3222 17 14 12.2890 2.0887 -2.6522 18 1 12.4594 3.0863 -1.5655 19 1 13.3492 1.0545 -2.5448 20 1 12.3914 2.7684 -3.9685 21 6 7.8948 0.8460 -1.0072 22 6 3.5802 -1.2048 0.0002 23 8 4.2558 -2.3811 0.0002 24 6 2.1932 -1.1980 -0.0005 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6501 2.1342 -0.0004 29 1 4.1062 2.1535 0.0001 30 1 5.1439 1.2899 -2.4392 31 1 5.2941 2.5514 -1.1842 32 1 6.6920 2.5972 -3.5895 33 1 7.2775 3.3877 -2.0909 34 1 8.6412 -0.3166 -3.3897 35 1 11.3279 -0.5596 -2.2733 36 1 8.3443 1.5123 -0.2708 37 1 8.3113 -0.1572 -0.9164 38 1 4.4517 -2.7223 -0.8831 39 1 1.6493 -2.1311 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -99.815279 kcal Electronic energy + Delta-G solvation = -23553.769334 eV Core-core repulsion = 20040.451964 eV Total energy + Delta-G solvation = -3513.317370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30547 -38.73927 -37.08547 -36.76995 -34.31548 -32.70033 -32.16753 -30.12769 -29.98929 -28.13522 -27.31735 -25.04414 -23.17389 -22.58398 -21.58111 -19.71979 -19.32278 -17.79582 -17.30368 -16.83648 -16.10734 -15.58970 -15.17587 -15.04691 -14.63461 -14.52944 -14.05190 -13.82683 -13.69224 -13.09103 -13.05087 -12.85169 -12.63512 -12.32295 -11.88595 -11.82232 -11.66138 -11.49557 -11.43620 -11.04294 -10.79991 -10.65950 -10.52130 -10.51591 -10.20301 -9.47692 -9.31767 -8.90044 -8.69824 -8.59824 -8.38327 -7.77532 -6.31021 -4.40706 0.95634 1.22268 3.09524 3.20661 3.26845 3.28219 3.53085 3.77245 4.18262 4.24533 4.67176 4.70699 4.88569 4.97344 5.14555 5.16927 5.36529 5.37689 5.41593 5.53530 5.65747 5.78502 5.80525 5.92658 6.03904 6.06235 6.22080 6.33965 6.39198 6.47868 6.68693 6.70843 6.83511 6.98750 7.23665 7.31396 7.72074 7.72196 7.96903 8.20534 8.61897 8.74681 9.29018 9.43334 10.76326 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.004061 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.841040 B = 6892.963379 C = 7305.898447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.073 4.073 5 C -0.146 4.146 6 C 0.563 3.437 7 O -0.531 6.531 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.119 4.119 11 C 0.251 3.749 12 O -0.584 6.584 13 C -0.539 4.539 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.094 3.906 22 C 0.158 3.842 23 O -0.484 6.484 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.386 0.614 35 H 0.272 0.728 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.393 0.607 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.028 1.679 1.329 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.060 4.060 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.150 4.150 6 C 0.350 3.650 7 O -0.409 6.409 8 N -0.337 5.337 9 C -0.019 4.019 10 C -0.157 4.157 11 C 0.210 3.790 12 O -0.394 6.394 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.027 4.027 22 C 0.112 3.888 23 O -0.294 6.294 24 C -0.173 4.173 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.250 0.750 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.159 1.478 2.260 17.371 hybrid contribution 1.508 -0.017 -0.352 1.548 sum -15.652 1.460 1.908 15.835 Atomic orbital electron populations 1.20826 0.90784 1.02986 1.02542 1.19888 0.96195 0.92585 0.97380 1.20945 0.93753 0.97715 1.03030 1.21340 0.94133 0.97130 0.96543 1.20481 0.94311 0.93965 1.06248 1.17703 0.86113 0.80226 0.80915 1.90794 1.69469 1.41592 1.39039 1.48678 1.09706 1.37598 1.37717 1.22132 0.96938 0.90876 0.91990 1.22648 0.94825 0.98657 0.99576 1.19609 0.91767 0.84449 0.83212 1.86056 1.55516 1.39842 1.58028 1.21466 0.90098 0.94778 1.51424 0.91486 1.25083 0.99933 0.94944 0.93245 1.69554 1.30246 1.04725 1.48896 0.86433 0.82415 0.79050 0.78843 1.19992 1.21047 1.19971 1.23342 0.76046 1.02912 1.00393 1.18405 0.89433 0.84587 0.96408 1.84797 1.76441 1.34858 1.33302 1.21221 0.92850 0.98558 1.04666 0.90896 0.91223 0.91376 0.85385 0.84778 0.92180 0.92613 0.90670 0.90427 0.76171 0.91775 0.92101 0.90021 0.75034 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.00 36.01 0.36 -0.47 16 2 C -0.06 -0.64 5.88 -104.57 -0.62 -1.26 16 3 C -0.14 -1.50 9.67 -39.63 -0.38 -1.89 16 4 C -0.07 -0.99 8.52 -39.20 -0.33 -1.33 16 5 C -0.15 -2.48 5.43 -104.85 -0.57 -3.05 16 6 C 0.56 11.90 7.14 -12.47 -0.09 11.81 16 7 O -0.53 -13.34 16.75 -5.65 -0.09 -13.43 16 8 N -0.60 -12.62 3.32 -171.60 -0.57 -13.19 16 9 C 0.10 1.81 5.63 -3.06 -0.02 1.80 16 10 C -0.12 -2.32 6.12 -24.89 -0.15 -2.47 16 11 C 0.25 6.00 0.89 -89.50 -0.08 5.92 16 12 O -0.58 -14.83 13.19 -35.23 -0.46 -15.30 16 13 C -0.54 -13.87 8.25 -34.44 -0.28 -14.16 16 14 H 0.07 1.67 7.77 -52.48 -0.41 1.27 16 15 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 16 N -0.90 -23.76 10.72 55.43 0.59 -23.17 16 17 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.09 2.27 5.63 -2.42 -0.01 2.26 16 22 C 0.16 2.45 6.69 -38.70 -0.26 2.19 16 23 O -0.48 -7.76 12.49 -29.59 -0.37 -8.13 16 24 C -0.15 -1.89 9.62 -39.47 -0.38 -2.27 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.13 1.68 5.89 -52.49 -0.31 1.37 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.80 5.96 -51.93 -0.31 0.49 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.41 8.02 -51.93 -0.42 0.99 16 34 H 0.39 10.18 6.93 45.56 0.32 10.49 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.06 1.50 8.04 -51.93 -0.42 1.08 16 37 H 0.08 2.22 7.69 -51.93 -0.40 1.82 16 38 H 0.39 4.66 9.06 45.56 0.41 5.07 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -31.71 326.49 -7.54 -39.24 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -3.62 Total: 15.03 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.91 Total: -1.15 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.02 Total: -36.36 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.93 Total: -36.86 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.71 -7.54 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.572 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds