Wall clock time and date at job start Tue Mar 31 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38539 * 119.80770 * 2 1 4 4 C 1.37793 * 120.30376 * 179.97438 * 3 2 1 5 5 C 1.39701 * 119.90303 * 359.76825 * 4 3 2 6 6 C 1.47541 * 120.19197 * 180.24970 * 5 4 3 7 7 O 1.21590 * 119.99761 * 132.95301 * 6 5 4 8 8 N 1.34775 * 120.00313 * 312.96185 * 6 5 4 9 9 C 1.47023 * 125.64399 * 4.85484 * 8 6 5 10 10 C 1.54328 * 107.26947 * 181.02866 * 9 8 6 11 11 C 1.55157 * 102.94173 * 22.19243 * 10 9 8 12 12 O 1.42900 * 111.00398 * 82.57235 * 11 10 9 13 13 C 1.50700 * 111.00463 * 206.38606 * 11 10 9 14 14 H 1.08003 * 119.99696 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00063 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99852 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00084 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47408 * 59.99580 * 17 15 13 19 19 H 1.48504 * 109.47209 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47167 * 299.99771 * 17 15 13 21 21 C 1.47414 * 125.65088 * 184.55661 * 8 6 5 22 22 C 1.40137 * 119.61987 * 0.50068 * 5 4 3 23 23 O 1.35651 * 120.15044 * 179.74801 * 22 5 4 24 24 C 1.38060 * 119.80327 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46775 * 269.98183 * 1 2 3 26 26 H 1.08997 * 109.46981 * 29.97895 * 1 2 3 27 27 H 1.08999 * 109.46981 * 149.98138 * 1 2 3 28 28 H 1.08002 * 119.84862 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.04839 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.88494 * 300.44441 * 9 8 6 31 31 H 1.09000 * 109.88407 * 61.61269 * 9 8 6 32 32 H 1.08996 * 110.71761 * 140.55770 * 10 9 8 33 33 H 1.09000 * 110.71973 * 263.65581 * 10 9 8 34 34 H 0.96694 * 114.00143 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99986 * 180.02562 * 16 15 13 36 36 H 1.09006 * 110.36768 * 274.74228 * 21 8 6 37 37 H 1.09002 * 110.36825 * 37.05981 * 21 8 6 38 38 H 0.96705 * 114.00510 * 269.72389 * 23 22 5 39 39 H 1.08001 * 119.95800 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2021 0.0000 4 6 3.5736 1.2140 0.0005 5 6 4.2805 0.0091 0.0060 6 6 5.7559 0.0144 0.0121 7 8 6.3631 -0.6993 0.7869 8 7 6.4305 0.8105 -0.8408 9 6 5.8282 1.7918 -1.7551 10 6 6.9792 2.4448 -2.5492 11 6 8.1156 1.3939 -2.4416 12 8 7.9545 0.3636 -3.4186 13 6 9.4682 2.0463 -2.5667 14 1 9.5414 3.1142 -2.7105 15 6 10.6123 1.2799 -2.4978 16 7 10.5231 -0.0204 -2.3222 17 14 12.2890 2.0887 -2.6522 18 1 12.4594 3.0863 -1.5655 19 1 13.3492 1.0545 -2.5448 20 1 12.3914 2.7684 -3.9685 21 6 7.8948 0.8460 -1.0072 22 6 3.5802 -1.2048 0.0002 23 8 4.2558 -2.3811 0.0002 24 6 2.1932 -1.1980 -0.0005 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6501 2.1342 -0.0004 29 1 4.1062 2.1535 0.0001 30 1 5.1439 1.2899 -2.4392 31 1 5.2941 2.5514 -1.1842 32 1 6.6920 2.5972 -3.5895 33 1 7.2775 3.3877 -2.0909 34 1 8.6412 -0.3166 -3.3897 35 1 11.3279 -0.5596 -2.2733 36 1 8.3443 1.5123 -0.2708 37 1 8.3113 -0.1572 -0.9164 38 1 4.4517 -2.7223 -0.8831 39 1 1.6493 -2.1311 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:01 Heat of formation + Delta-G solvation = -123.679338 kcal Electronic energy + Delta-G solvation = -23554.804158 eV Core-core repulsion = 20040.451964 eV Total energy + Delta-G solvation = -3514.352194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61543 -40.17986 -38.74217 -37.93407 -36.12753 -34.17616 -33.73954 -31.77338 -30.98324 -29.73228 -28.52510 -26.79853 -24.59924 -23.65362 -22.75215 -21.50055 -20.79094 -19.19812 -18.96147 -18.30379 -17.37931 -17.06714 -16.91737 -16.41945 -16.22507 -16.02010 -15.27120 -14.97463 -14.82993 -14.67930 -14.57943 -14.34137 -13.72330 -13.52212 -13.41800 -13.31560 -12.96018 -12.83265 -12.67911 -12.58209 -12.34668 -12.31894 -12.26022 -12.08991 -11.72614 -11.26451 -10.96092 -10.65698 -10.35104 -9.87830 -9.66128 -9.45096 -8.27786 -6.45098 -0.11309 0.25804 1.42902 1.43427 1.51881 1.64104 2.05693 2.37481 2.60247 2.98434 3.16043 3.48804 3.75705 3.79642 3.95673 4.09404 4.20595 4.26756 4.34263 4.36708 4.54445 4.63444 4.69351 4.77342 4.90912 4.97260 4.98633 5.05823 5.18636 5.26123 5.27933 5.31021 5.40437 5.43328 5.52829 5.73911 5.82696 6.01301 6.56311 6.64994 6.68946 7.10841 7.27641 7.36214 8.77805 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.004061 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.841040 B = 6892.963379 C = 7305.898447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.181 4.181 6 C 0.559 3.441 7 O -0.588 6.588 8 N -0.607 5.607 9 C 0.107 3.893 10 C -0.113 4.113 11 C 0.234 3.766 12 O -0.589 6.589 13 C -0.558 4.558 14 H 0.073 0.927 15 C 0.024 3.976 16 N -0.920 5.920 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.267 1.267 21 C 0.107 3.893 22 C 0.136 3.864 23 O -0.507 6.507 24 C -0.155 4.155 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.167 0.833 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.377 0.623 35 H 0.271 0.729 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.403 0.597 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.166 3.854 0.882 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.047 4.047 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.185 4.185 6 C 0.350 3.650 7 O -0.470 6.470 8 N -0.339 5.339 9 C -0.015 4.015 10 C -0.151 4.151 11 C 0.193 3.807 12 O -0.399 6.399 13 C -0.596 4.596 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.560 5.560 17 Si 0.792 3.208 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.016 4.016 22 C 0.090 3.910 23 O -0.320 6.320 24 C -0.173 4.173 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.228 0.772 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.262 0.738 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.338 3.688 1.782 20.746 hybrid contribution 2.376 -0.711 -0.204 2.488 sum -17.962 2.977 1.577 18.275 Atomic orbital electron populations 1.20937 0.87696 1.04605 1.03793 1.20402 0.98286 0.91719 0.94300 1.21371 0.92591 0.99516 1.01003 1.21485 0.95398 0.96009 0.96249 1.20288 0.91317 0.96182 1.10691 1.18478 0.88095 0.78841 0.79629 1.90740 1.71162 1.43788 1.41300 1.48731 1.08380 1.38493 1.38250 1.22317 0.96315 0.90935 0.91899 1.22666 0.93567 0.97876 1.00968 1.19868 0.93264 0.85025 0.82498 1.86045 1.55152 1.40037 1.58630 1.21836 0.91202 0.95206 1.51316 0.90890 1.25872 1.03394 0.95390 0.92983 1.69683 1.30822 1.05890 1.49572 0.85464 0.78223 0.78060 0.79040 1.19496 1.21221 1.19160 1.22920 0.78353 0.99837 1.00537 1.18758 0.90803 0.83812 0.97623 1.84752 1.77050 1.35519 1.34644 1.21458 0.91291 1.00443 1.04115 0.89586 0.89230 0.90283 0.81513 0.83815 0.91084 0.88539 0.89453 0.88888 0.77234 0.92003 0.93642 0.94434 0.73819 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.00 71.24 0.71 -0.33 16 2 C -0.05 -0.80 5.88 -19.83 -0.12 -0.92 16 3 C -0.13 -2.23 9.67 22.24 0.22 -2.02 16 4 C -0.07 -1.80 8.52 22.52 0.19 -1.61 16 5 C -0.18 -6.11 5.43 -20.01 -0.11 -6.22 16 6 C 0.56 24.58 7.14 86.70 0.62 25.20 16 7 O -0.59 -31.55 16.75 6.46 0.11 -31.44 16 8 N -0.61 -25.93 3.32 -815.09 -2.71 -28.64 16 9 C 0.11 3.56 5.63 86.73 0.49 4.05 16 10 C -0.11 -4.24 6.12 31.78 0.19 -4.04 16 11 C 0.23 11.41 0.89 -10.07 -0.01 11.41 16 12 O -0.59 -30.81 13.19 -148.98 -1.97 -32.77 16 13 C -0.56 -28.99 8.25 25.60 0.21 -28.78 16 14 H 0.07 3.61 7.77 -2.91 -0.02 3.59 16 15 C 0.02 1.26 5.30 84.65 0.45 1.71 16 16 N -0.92 -50.85 10.72 21.45 0.23 -50.62 16 17 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 C 0.11 5.39 5.63 86.93 0.49 5.88 16 22 C 0.14 4.20 6.69 22.84 0.15 4.35 16 23 O -0.51 -17.03 12.49 -79.20 -0.99 -18.02 16 24 C -0.15 -3.43 9.62 22.34 0.21 -3.21 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 28 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.14 3.13 5.89 -2.91 -0.02 3.11 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.10 2.45 5.96 -2.39 -0.01 2.44 16 32 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.09 3.17 8.02 -2.39 -0.02 3.15 16 34 H 0.38 20.90 6.93 -74.06 -0.51 20.38 16 35 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.05 2.37 8.04 -2.38 -0.02 2.35 16 37 H 0.04 2.19 7.69 -2.39 -0.02 2.17 16 38 H 0.40 10.35 9.06 -74.05 -0.67 9.68 16 39 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.49 326.49 0.31 -73.17 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.09 Total: 38.99 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 3.70 Total: 5.47 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.48 Total: -79.26 kcal Atomic # 8 Polarization: -79.39 SS G_CDS: -2.85 Total: -82.23 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -73.49 0.31 -73.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.507 kcal (2) G-P(sol) polarization free energy of solvation -73.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds