Wall clock time and date at job start Tue Mar 31 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38542 * 119.81029 * 2 1 4 4 C 1.37788 * 120.30452 * 179.97438 * 3 2 1 5 5 C 1.39707 * 119.90451 * 359.97438 * 4 3 2 6 6 C 1.47537 * 120.18766 * 179.97438 * 5 4 3 7 7 O 1.21590 * 120.00050 * 173.14761 * 6 5 4 8 8 N 1.34773 * 120.00069 * 353.15218 * 6 5 4 9 9 C 1.47429 * 125.65001 * 185.67715 * 8 6 5 10 10 C 1.55377 * 104.87707 * 204.16641 * 9 8 6 11 11 C 1.55159 * 101.36583 * 323.01761 * 10 9 8 12 12 O 1.42901 * 110.71682 * 277.04006 * 11 10 9 13 13 C 1.50695 * 110.72149 * 153.94981 * 11 10 9 14 14 H 1.08002 * 120.00034 * 2.88874 * 13 11 10 15 15 C 1.37876 * 120.00206 * 182.89280 * 13 11 10 16 16 N 1.31515 * 119.99791 * 4.60982 * 15 13 11 17 17 Si 1.86795 * 120.00568 * 184.60790 * 15 13 11 18 18 H 1.48503 * 109.47334 * 84.98279 * 17 15 13 19 19 H 1.48500 * 109.47543 * 204.98655 * 17 15 13 20 20 H 1.48506 * 109.46816 * 324.98541 * 17 15 13 21 21 C 1.47023 * 125.65135 * 5.71275 * 8 6 5 22 22 C 1.40138 * 119.61751 * 0.25880 * 5 4 3 23 23 O 1.35655 * 120.14670 * 179.72104 * 22 5 4 24 24 C 1.38059 * 119.80137 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47138 * 89.99646 * 1 2 3 26 26 H 1.09001 * 109.47515 * 210.00411 * 1 2 3 27 27 H 1.09005 * 109.46985 * 330.00275 * 1 2 3 28 28 H 1.08002 * 119.84549 * 359.95504 * 3 2 1 29 29 H 1.07999 * 120.04271 * 179.97438 * 4 3 2 30 30 H 1.09006 * 110.36115 * 323.00223 * 9 8 6 31 31 H 1.09001 * 110.36533 * 85.20935 * 9 8 6 32 32 H 1.09002 * 111.19298 * 204.98102 * 10 9 8 33 33 H 1.09002 * 111.02775 * 80.97835 * 10 9 8 34 34 H 0.96705 * 114.00259 * 171.82190 * 12 11 10 35 35 H 0.96998 * 120.00147 * 180.02562 * 16 15 13 36 36 H 1.09009 * 109.87941 * 59.49096 * 21 8 6 37 37 H 1.09001 * 109.88507 * 298.32882 * 21 8 6 38 38 H 0.96705 * 113.99657 * 89.99917 * 23 22 5 39 39 H 1.08003 * 119.95790 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2021 0.0000 4 6 3.5735 1.2140 0.0005 5 6 4.2805 0.0090 0.0016 6 6 5.7558 0.0144 0.0016 7 8 6.3676 -1.0287 0.1282 8 7 6.4254 1.1756 -0.1386 9 6 7.8870 1.3137 -0.2740 10 6 8.1985 2.7552 0.2152 11 6 6.9694 3.5335 -0.3244 12 8 7.1597 3.8917 -1.6946 13 6 6.7042 4.7581 0.5128 14 1 7.3664 5.0084 1.3285 15 6 5.6162 5.5590 0.2376 16 7 4.7595 5.2064 -0.6959 17 14 5.3588 7.1449 1.1904 18 1 6.1426 8.2358 0.5572 19 1 3.9171 7.5007 1.1795 20 1 5.8122 6.9592 2.5923 21 6 5.8195 2.5145 -0.1811 22 6 3.5801 -1.2048 -0.0033 23 8 4.2558 -2.3812 -0.0081 24 6 2.1931 -1.1980 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6501 2.1342 -0.0007 29 1 4.1061 2.1535 0.0001 30 1 8.3968 0.5822 0.3531 31 1 8.1846 1.1925 -1.3156 32 1 9.1224 3.1299 -0.2254 33 1 8.2410 2.7983 1.3035 34 1 6.3746 4.2681 -2.1155 35 1 3.9943 5.7700 -0.8898 36 1 5.2706 2.7024 0.7418 37 1 5.1480 2.5905 -1.0363 38 1 4.4516 -2.7258 0.8740 39 1 1.6492 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846667.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:06 Heat of formation + Delta-G solvation = -82.230884 kcal Electronic energy + Delta-G solvation = -23920.711952 eV Core-core repulsion = 20408.157099 eV Total energy + Delta-G solvation = -3512.554854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.29406 -38.69715 -37.20958 -36.55431 -34.23906 -32.78006 -32.32055 -30.17888 -29.73451 -28.05730 -27.14689 -25.33501 -23.16055 -22.44575 -21.30817 -19.90413 -19.34890 -17.53365 -17.33510 -16.68391 -16.06531 -15.47024 -15.25554 -14.99812 -14.52387 -14.41282 -14.13768 -13.61523 -13.36076 -13.08349 -13.00261 -12.82198 -12.52585 -12.29178 -11.78441 -11.67886 -11.64020 -11.54291 -11.26770 -11.08607 -10.76898 -10.65864 -10.57423 -10.32705 -10.17108 -9.39232 -9.29318 -8.78685 -8.68189 -8.44193 -8.32528 -7.89708 -6.40995 -4.48220 1.04126 1.47649 3.14219 3.21795 3.22880 3.24556 3.59822 4.00247 4.18173 4.39834 4.83798 4.87611 5.00387 5.07048 5.32424 5.38514 5.51381 5.53956 5.67385 5.69987 5.81468 5.84601 5.97165 6.00127 6.15903 6.20739 6.34983 6.46205 6.51746 6.57256 6.66959 6.73042 6.88875 6.95905 7.01188 7.21192 7.61940 7.88768 7.90190 8.18892 8.54950 8.72653 9.19155 9.26195 10.66907 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.006070 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.329082 B = 4611.950839 C = 6095.727915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.138 4.138 4 C -0.098 4.098 5 C -0.164 4.164 6 C 0.567 3.433 7 O -0.550 6.550 8 N -0.608 5.608 9 C 0.110 3.890 10 C -0.118 4.118 11 C 0.246 3.754 12 O -0.581 6.581 13 C -0.535 4.535 14 H 0.067 0.933 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.902 3.098 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.083 3.917 22 C 0.163 3.837 23 O -0.481 6.481 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.185 0.815 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.380 0.620 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.391 0.609 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -6.966 2.326 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.156 4.156 4 C -0.116 4.116 5 C -0.168 4.168 6 C 0.357 3.643 7 O -0.430 6.430 8 N -0.341 5.341 9 C -0.013 4.013 10 C -0.156 4.156 11 C 0.206 3.794 12 O -0.389 6.389 13 C -0.573 4.573 14 H 0.086 0.914 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.039 4.039 22 C 0.117 3.883 23 O -0.291 6.291 24 C -0.186 4.186 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.201 0.799 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.162 -7.697 1.824 10.027 hybrid contribution -0.924 1.068 0.787 1.617 sum -7.086 -6.628 2.611 10.048 Atomic orbital electron populations 1.20838 0.90996 1.02844 1.02529 1.19988 0.96117 0.92790 0.96577 1.21101 0.94272 0.97563 1.02632 1.23282 0.95150 1.00369 0.92757 1.20401 0.93676 0.93921 1.08795 1.17750 0.86537 0.82651 0.77320 1.90709 1.69585 1.31209 1.51514 1.48628 1.08386 1.06765 1.70279 1.22285 0.80432 0.97914 1.00634 1.22858 0.99660 0.92649 1.00446 1.19554 0.88118 0.90586 0.81141 1.86171 1.42081 1.84504 1.26119 1.21542 1.10972 1.08843 1.15965 0.91444 1.25036 0.94940 0.98146 0.94952 1.69696 1.13686 1.38431 1.31942 0.86430 0.77304 0.83033 0.80250 1.20260 1.21052 1.19783 1.23534 0.98795 0.80172 1.01383 1.18450 0.89352 0.84685 0.95830 1.84715 1.76437 1.34678 1.33291 1.21162 0.92892 0.98335 1.06241 0.90879 0.91555 0.91179 0.85290 0.79901 0.91515 0.91813 0.90360 0.90448 0.77042 0.91934 0.90376 0.90456 0.75163 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.00 36.00 0.36 -0.75 16 2 C -0.05 -0.72 5.88 -104.58 -0.62 -1.34 16 3 C -0.14 -2.08 9.67 -39.63 -0.38 -2.46 16 4 C -0.10 -1.74 8.61 -39.20 -0.34 -2.08 16 5 C -0.16 -3.09 5.89 -104.84 -0.62 -3.71 16 6 C 0.57 11.96 7.80 -12.47 -0.10 11.87 16 7 O -0.55 -12.45 15.42 -16.47 -0.25 -12.70 16 8 N -0.61 -12.67 3.33 -175.82 -0.58 -13.26 16 9 C 0.11 2.15 6.94 -2.27 -0.02 2.14 16 10 C -0.12 -2.36 6.26 -24.33 -0.15 -2.51 16 11 C 0.25 5.60 0.84 -89.94 -0.08 5.53 16 12 O -0.58 -13.87 13.07 -35.23 -0.46 -14.33 16 13 C -0.54 -13.05 8.11 -34.44 -0.28 -13.33 16 14 H 0.07 1.64 7.78 -52.49 -0.41 1.24 16 15 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 16 N -0.90 -21.37 11.02 55.43 0.61 -20.76 16 17 Si 0.90 19.12 29.54 -169.99 -5.02 14.10 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C 0.08 1.77 3.23 -3.07 -0.01 1.76 16 22 C 0.16 2.73 6.71 -38.70 -0.26 2.47 16 23 O -0.48 -7.86 11.60 -40.42 -0.47 -8.33 16 24 C -0.17 -2.34 9.62 -39.47 -0.38 -2.72 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.18 3.53 2.74 -58.16 -0.16 3.37 16 30 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 34 H 0.38 9.06 7.48 45.56 0.34 9.40 16 35 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 36 H 0.08 1.72 6.42 -51.92 -0.33 1.39 16 37 H 0.08 1.72 6.45 -51.93 -0.33 1.38 16 38 H 0.39 4.80 9.06 45.56 0.41 5.21 16 39 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -28.22 321.11 -7.70 -35.92 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -3.40 Total: 18.02 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.96 Total: -3.50 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.03 Total: -34.02 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.18 Total: -35.36 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.22 -7.70 -35.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846667.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.313 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds