Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38542 * 119.81029 * 2 1 4 4 C 1.37788 * 120.30452 * 179.97438 * 3 2 1 5 5 C 1.39707 * 119.90451 * 359.97438 * 4 3 2 6 6 C 1.47537 * 120.18766 * 179.97438 * 5 4 3 7 7 O 1.21590 * 120.00050 * 173.14761 * 6 5 4 8 8 N 1.34773 * 120.00069 * 353.15218 * 6 5 4 9 9 C 1.47429 * 125.65001 * 185.67715 * 8 6 5 10 10 C 1.55377 * 104.87707 * 204.16641 * 9 8 6 11 11 C 1.55159 * 101.36583 * 323.01761 * 10 9 8 12 12 O 1.42901 * 110.71682 * 277.04006 * 11 10 9 13 13 C 1.50695 * 110.72149 * 153.94981 * 11 10 9 14 14 H 1.08002 * 120.00034 * 2.88874 * 13 11 10 15 15 C 1.37876 * 120.00206 * 182.89280 * 13 11 10 16 16 N 1.31515 * 119.99791 * 4.60982 * 15 13 11 17 17 Si 1.86795 * 120.00568 * 184.60790 * 15 13 11 18 18 H 1.48503 * 109.47334 * 84.98279 * 17 15 13 19 19 H 1.48500 * 109.47543 * 204.98655 * 17 15 13 20 20 H 1.48506 * 109.46816 * 324.98541 * 17 15 13 21 21 C 1.47023 * 125.65135 * 5.71275 * 8 6 5 22 22 C 1.40138 * 119.61751 * 0.25880 * 5 4 3 23 23 O 1.35655 * 120.14670 * 179.72104 * 22 5 4 24 24 C 1.38059 * 119.80137 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47138 * 89.99646 * 1 2 3 26 26 H 1.09001 * 109.47515 * 210.00411 * 1 2 3 27 27 H 1.09005 * 109.46985 * 330.00275 * 1 2 3 28 28 H 1.08002 * 119.84549 * 359.95504 * 3 2 1 29 29 H 1.07999 * 120.04271 * 179.97438 * 4 3 2 30 30 H 1.09006 * 110.36115 * 323.00223 * 9 8 6 31 31 H 1.09001 * 110.36533 * 85.20935 * 9 8 6 32 32 H 1.09002 * 111.19298 * 204.98102 * 10 9 8 33 33 H 1.09002 * 111.02775 * 80.97835 * 10 9 8 34 34 H 0.96705 * 114.00259 * 171.82190 * 12 11 10 35 35 H 0.96998 * 120.00147 * 180.02562 * 16 15 13 36 36 H 1.09009 * 109.87941 * 59.49096 * 21 8 6 37 37 H 1.09001 * 109.88507 * 298.32882 * 21 8 6 38 38 H 0.96705 * 113.99657 * 89.99917 * 23 22 5 39 39 H 1.08003 * 119.95790 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2021 0.0000 4 6 3.5735 1.2140 0.0005 5 6 4.2805 0.0090 0.0016 6 6 5.7558 0.0144 0.0016 7 8 6.3676 -1.0287 0.1282 8 7 6.4254 1.1756 -0.1386 9 6 7.8870 1.3137 -0.2740 10 6 8.1985 2.7552 0.2152 11 6 6.9694 3.5335 -0.3244 12 8 7.1597 3.8917 -1.6946 13 6 6.7042 4.7581 0.5128 14 1 7.3664 5.0084 1.3285 15 6 5.6162 5.5590 0.2376 16 7 4.7595 5.2064 -0.6959 17 14 5.3588 7.1449 1.1904 18 1 6.1426 8.2358 0.5572 19 1 3.9171 7.5007 1.1795 20 1 5.8122 6.9592 2.5923 21 6 5.8195 2.5145 -0.1811 22 6 3.5801 -1.2048 -0.0033 23 8 4.2558 -2.3812 -0.0081 24 6 2.1931 -1.1980 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6501 2.1342 -0.0007 29 1 4.1061 2.1535 0.0001 30 1 8.3968 0.5822 0.3531 31 1 8.1846 1.1925 -1.3156 32 1 9.1224 3.1299 -0.2254 33 1 8.2410 2.7983 1.3035 34 1 6.3746 4.2681 -2.1155 35 1 3.9943 5.7700 -0.8898 36 1 5.2706 2.7024 0.7418 37 1 5.1480 2.5905 -1.0363 38 1 4.4516 -2.7258 0.8740 39 1 1.6492 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846667.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -101.193810 kcal Electronic energy + Delta-G solvation = -23921.534247 eV Core-core repulsion = 20408.157099 eV Total energy + Delta-G solvation = -3513.377148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.73596 -40.15360 -38.82445 -37.83483 -35.99173 -34.26087 -33.95039 -31.70440 -30.99921 -29.70625 -28.32632 -27.08152 -24.67843 -23.71448 -22.61245 -21.57067 -20.91761 -19.11712 -18.77427 -18.20839 -17.64880 -16.96350 -16.74859 -16.60694 -16.02213 -15.91805 -15.48302 -14.94327 -14.82464 -14.61094 -14.44541 -14.26575 -13.82493 -13.48518 -13.45270 -13.26973 -12.99605 -12.79066 -12.69904 -12.45811 -12.37473 -12.30431 -12.19792 -12.06907 -11.64500 -11.06204 -10.93575 -10.61742 -10.13693 -9.87539 -9.77913 -9.46342 -8.23675 -6.37348 -0.23687 0.27177 1.45145 1.49410 1.55945 1.78589 2.03198 2.41752 2.68303 3.01744 3.21626 3.47835 3.79208 3.89537 3.95257 4.02339 4.12930 4.25213 4.30405 4.37340 4.54867 4.60061 4.70140 4.77673 4.86085 4.88267 4.97247 5.06452 5.13895 5.24206 5.25815 5.30192 5.32375 5.47609 5.53550 5.76372 5.82424 6.07554 6.53476 6.67147 6.77742 7.09777 7.31133 7.37783 8.82925 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.006070 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.329082 B = 4611.950839 C = 6095.727915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.110 4.110 5 C -0.197 4.197 6 C 0.561 3.439 7 O -0.573 6.573 8 N -0.614 5.614 9 C 0.110 3.890 10 C -0.111 4.111 11 C 0.231 3.769 12 O -0.588 6.588 13 C -0.559 4.559 14 H 0.062 0.938 15 C 0.039 3.961 16 N -0.906 5.906 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.108 3.892 22 C 0.157 3.843 23 O -0.494 6.494 24 C -0.161 4.161 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.163 0.837 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.376 0.624 35 H 0.273 0.727 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.406 0.594 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -7.385 2.790 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.039 4.039 3 C -0.162 4.162 4 C -0.128 4.128 5 C -0.201 4.201 6 C 0.353 3.647 7 O -0.455 6.455 8 N -0.346 5.346 9 C -0.012 4.012 10 C -0.149 4.149 11 C 0.191 3.809 12 O -0.396 6.396 13 C -0.597 4.597 14 H 0.080 0.920 15 C -0.163 4.163 16 N -0.545 5.545 17 Si 0.782 3.218 18 H -0.206 1.206 19 H -0.205 1.205 20 H -0.198 1.198 21 C -0.014 4.014 22 C 0.110 3.890 23 O -0.306 6.306 24 C -0.179 4.179 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.179 0.821 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.225 0.775 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.266 0.734 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.232 -8.120 2.296 11.788 hybrid contribution -0.347 1.162 0.631 1.367 sum -8.579 -6.957 2.926 11.427 Atomic orbital electron populations 1.20951 0.87694 1.04545 1.03876 1.20432 0.98316 0.91634 0.93535 1.21314 0.93220 0.99236 1.02442 1.23049 0.96420 0.99131 0.94198 1.20379 0.92332 0.95378 1.11996 1.18236 0.87741 0.82190 0.76566 1.90670 1.70371 1.31708 1.52790 1.48710 1.08807 1.06657 1.70396 1.22312 0.80160 0.97975 1.00737 1.22832 0.98990 0.92307 1.00778 1.19763 0.89848 0.90808 0.80447 1.86161 1.42025 1.84573 1.26850 1.21720 1.11475 1.10017 1.16458 0.92024 1.25599 0.94701 1.00269 0.95711 1.69759 1.13632 1.38908 1.32171 0.85597 0.77224 0.79900 0.79036 1.20591 1.20469 1.19814 1.23160 0.97833 0.80184 1.00258 1.18676 0.90482 0.84025 0.95788 1.84662 1.76740 1.34436 1.34800 1.21484 0.91641 0.99995 1.04782 0.89452 0.89383 0.90079 0.83879 0.82061 0.90439 0.92020 0.89475 0.89795 0.77452 0.91698 0.91435 0.91712 0.73436 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.00 71.24 0.71 -0.98 16 2 C -0.04 -0.91 5.88 -19.84 -0.12 -1.03 16 3 C -0.14 -4.15 9.67 22.24 0.22 -3.94 16 4 C -0.11 -3.96 8.61 22.52 0.19 -3.76 16 5 C -0.20 -7.49 5.89 -20.01 -0.12 -7.61 16 6 C 0.56 24.19 7.80 86.70 0.68 24.87 16 7 O -0.57 -26.37 15.42 16.80 0.26 -26.11 16 8 N -0.61 -26.20 3.33 -828.44 -2.76 -28.96 16 9 C 0.11 4.38 6.94 87.02 0.60 4.98 16 10 C -0.11 -4.47 6.26 32.15 0.20 -4.27 16 11 C 0.23 10.71 0.84 -10.35 -0.01 10.70 16 12 O -0.59 -28.62 13.07 -148.98 -1.95 -30.56 16 13 C -0.56 -27.53 8.11 25.60 0.21 -27.32 16 14 H 0.06 3.03 7.78 -2.91 -0.02 3.01 16 15 C 0.04 1.88 5.29 84.65 0.45 2.33 16 16 N -0.91 -43.29 11.02 21.45 0.24 -43.05 16 17 Si 0.96 38.96 29.54 68.60 2.03 40.99 16 18 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 21 C 0.11 4.74 3.23 86.73 0.28 5.02 16 22 C 0.16 5.10 6.71 22.84 0.15 5.25 16 23 O -0.49 -15.74 11.60 -68.90 -0.80 -16.54 16 24 C -0.16 -4.04 9.62 22.34 0.21 -3.82 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 27 H 0.08 1.07 8.08 -2.38 -0.02 1.06 16 28 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.16 6.46 2.74 -8.24 -0.02 6.44 16 30 H 0.08 2.89 7.98 -2.38 -0.02 2.87 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.08 3.23 8.04 -2.39 -0.02 3.21 16 34 H 0.38 18.41 7.48 -74.05 -0.55 17.86 16 35 H 0.27 12.45 8.31 -92.71 -0.77 11.68 16 36 H 0.07 3.10 6.42 -2.38 -0.02 3.08 16 37 H 0.06 3.00 6.45 -2.39 -0.02 2.98 16 38 H 0.41 9.69 9.06 -74.05 -0.67 9.02 16 39 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -60.32 321.11 0.55 -59.77 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -0.13 Total: 44.07 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 3.66 Total: 0.41 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.52 Total: -72.02 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: -2.49 Total: -73.21 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -60.32 0.55 -59.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846667.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.429 kcal (2) G-P(sol) polarization free energy of solvation -60.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds