Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37726 * 119.95473 * 2 1 4 4 C 1.39709 * 119.90660 * 180.25325 * 3 2 1 5 5 C 1.47603 * 120.08535 * 179.73840 * 4 3 2 6 6 O 1.21585 * 119.99978 * 27.14668 * 5 4 3 7 7 N 1.34781 * 120.00361 * 207.14012 * 5 4 3 8 8 C 1.47430 * 125.64656 * 356.29781 * 7 5 4 9 9 C 1.54904 * 104.83236 * 155.90616 * 8 7 5 10 10 C 1.55162 * 101.58516 * 37.00699 * 9 8 7 11 11 O 1.42893 * 110.71802 * 83.03862 * 10 9 8 12 12 C 1.50697 * 110.71945 * 206.13689 * 10 9 8 13 13 H 1.07994 * 120.00320 * 357.56064 * 12 10 9 14 14 C 1.37881 * 119.99732 * 177.28453 * 12 10 9 15 15 N 1.31513 * 120.00081 * 0.26805 * 14 12 10 16 16 Si 1.86796 * 119.99955 * 180.27453 * 14 12 10 17 17 H 1.48502 * 109.47409 * 59.99961 * 16 14 12 18 18 H 1.48503 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47229 * 300.00186 * 16 14 12 20 20 C 1.47315 * 125.61876 * 176.51609 * 7 5 4 21 21 C 1.39748 * 119.82864 * 359.47248 * 4 3 2 22 22 C 1.37684 * 119.90947 * 0.26961 * 21 4 3 23 23 C 1.38974 * 119.95406 * 179.74645 * 2 1 3 24 24 O 1.35709 * 119.91394 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46960 * 270.25505 * 1 2 3 26 26 H 1.09007 * 109.46960 * 30.25924 * 1 2 3 27 27 H 1.08994 * 109.46825 * 150.25533 * 1 2 3 28 28 H 1.07996 * 120.04413 * 0.02562 * 3 2 1 29 29 H 1.08997 * 110.36285 * 37.06272 * 8 7 5 30 30 H 1.09004 * 110.36079 * 274.74559 * 8 7 5 31 31 H 1.09001 * 111.00457 * 278.93359 * 9 8 7 32 32 H 1.08996 * 111.03882 * 155.09794 * 9 8 7 33 33 H 0.96702 * 114.00191 * 182.44411 * 11 10 9 34 34 H 0.97000 * 120.00329 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.06376 * 61.68020 * 20 7 5 36 36 H 1.09003 * 109.85124 * 300.42094 * 20 7 5 37 37 H 1.07998 * 120.04979 * 180.25151 * 21 4 3 38 38 H 1.08004 * 119.95317 * 180.02562 * 22 21 4 39 39 H 0.96698 * 114.00301 * 270.02451 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1933 0.0000 4 6 3.5918 1.1921 -0.0054 5 6 4.3328 2.4687 -0.0112 6 8 3.8294 3.4659 0.4688 7 7 5.5674 2.5289 -0.5485 8 6 6.3245 1.3866 -1.0920 9 6 7.3208 2.0141 -2.0986 10 6 7.7010 3.3348 -1.3785 11 8 8.7303 3.1066 -0.4140 12 6 8.1291 4.3812 -2.3748 13 1 8.1758 4.1387 -3.4262 14 6 8.4557 5.6499 -1.9448 15 7 8.3986 5.9453 -0.6645 16 14 8.9789 6.9491 -3.1807 17 1 7.8834 7.1726 -4.1580 18 1 9.2735 8.2190 -2.4692 19 1 10.1954 6.4891 -3.8975 20 6 6.3850 3.7466 -0.6855 21 6 4.2859 -0.0208 0.0005 22 6 3.5911 -1.2094 0.0058 23 6 2.2009 -1.2041 0.0053 24 8 1.5197 -2.3778 0.0110 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3633 -0.8922 -0.5098 28 1 1.6547 2.1285 0.0004 29 1 5.6539 0.6955 -1.6027 30 1 6.8629 0.8745 -0.2945 31 1 6.8362 2.2155 -3.0539 32 1 8.1948 1.3768 -2.2329 33 1 8.9782 3.8935 0.0904 34 1 8.6287 6.8377 -0.3619 35 1 6.5991 4.1659 0.2976 36 1 5.8579 4.4795 -1.2965 37 1 5.3659 -0.0258 0.0005 38 1 4.1268 -2.1472 0.0108 39 1 1.3222 -2.7137 0.8961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -95.561108 kcal Electronic energy + Delta-G solvation = -23289.597287 eV Core-core repulsion = 19776.464392 eV Total energy + Delta-G solvation = -3513.132896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38409 -39.12650 -37.34922 -36.42061 -34.46296 -32.86595 -32.22603 -30.55336 -29.77993 -28.15563 -26.81466 -25.29837 -23.63268 -22.51275 -21.57608 -19.74036 -19.11129 -18.53795 -17.22542 -16.74214 -16.05802 -15.75066 -15.46403 -14.94171 -14.84946 -14.33303 -14.15694 -13.61105 -13.43737 -13.20646 -13.01130 -12.87375 -12.76510 -12.31113 -12.13142 -12.01331 -11.74725 -11.58371 -11.39323 -11.05966 -10.85635 -10.70787 -10.53708 -10.46753 -10.20165 -9.49070 -9.35543 -8.95820 -8.69708 -8.60781 -8.35285 -7.94335 -6.31141 -4.39978 0.80790 1.23398 2.99146 3.21239 3.27134 3.28909 3.52143 3.77376 4.04708 4.25330 4.66617 4.73884 4.77497 4.97151 5.13889 5.22151 5.36839 5.43677 5.45781 5.57449 5.65858 5.77132 5.80439 5.92736 5.94742 6.06239 6.19523 6.28889 6.36680 6.45441 6.61816 6.72225 6.80644 6.91533 7.22344 7.33949 7.42983 7.70685 7.97217 8.13775 8.60955 8.66766 9.27491 9.36978 10.76678 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.003763 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.160883 B = 7439.638194 C = 7830.712169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 C -0.052 4.052 4 C -0.123 4.123 5 C 0.560 3.440 6 O -0.548 6.548 7 N -0.603 5.603 8 C 0.093 3.907 9 C -0.119 4.119 10 C 0.248 3.752 11 O -0.585 6.585 12 C -0.540 4.540 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.103 3.897 21 C -0.089 4.089 22 C -0.149 4.149 23 C 0.117 3.883 24 O -0.496 6.496 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.384 0.616 34 H 0.271 0.729 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 -13.813 2.074 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.070 4.070 4 C -0.126 4.126 5 C 0.348 3.652 6 O -0.427 6.427 7 N -0.335 5.335 8 C -0.030 4.030 9 C -0.157 4.157 10 C 0.208 3.792 11 O -0.395 6.395 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.534 5.534 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.018 4.018 21 C -0.108 4.108 22 C -0.167 4.167 23 C 0.073 3.927 24 O -0.307 6.307 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.743 -13.662 1.643 17.458 hybrid contribution 0.314 1.269 0.158 1.317 sum -10.429 -12.394 1.801 16.297 Atomic orbital electron populations 1.20678 0.90357 1.03294 1.02340 1.20134 0.96917 0.92196 1.03026 1.21023 0.92521 0.97868 0.95637 1.20092 0.94181 0.93634 1.04675 1.17850 0.80571 0.87855 0.78880 1.90761 1.68235 1.36851 1.46902 1.48777 1.14827 1.11867 1.58035 1.22686 0.94036 0.89364 0.96877 1.22794 0.97643 0.97943 0.97325 1.19489 0.83185 0.90587 0.85971 1.86084 1.57814 1.40591 1.54987 1.21479 1.46851 0.95402 0.94042 0.91524 1.25074 0.93953 0.98531 0.95675 1.69630 1.47880 1.22135 1.13749 0.86446 0.79224 0.80205 0.80962 1.20014 1.21049 1.19955 1.23128 0.92490 0.84639 1.01538 1.21826 1.01436 0.90981 0.96513 1.21337 0.93253 0.98830 1.03313 1.18480 0.89766 0.84747 0.99753 1.84728 1.76256 1.36290 1.33382 0.91289 0.91259 0.90876 0.84581 0.91122 0.91287 0.90384 0.90344 0.76446 0.91854 0.91407 0.91373 0.83600 0.84905 0.75447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.78 36.01 0.35 -0.66 16 2 C -0.12 -1.46 5.89 -104.53 -0.62 -2.08 16 3 C -0.05 -0.74 9.23 -39.22 -0.36 -1.10 16 4 C -0.12 -1.98 5.70 -104.96 -0.60 -2.58 16 5 C 0.56 11.40 7.63 -12.44 -0.09 11.31 16 6 O -0.55 -13.00 16.98 5.29 0.09 -12.91 16 7 N -0.60 -12.41 3.33 -171.48 -0.57 -12.98 16 8 C 0.09 1.60 5.01 -2.53 -0.01 1.59 16 9 C -0.12 -2.32 6.23 -24.58 -0.15 -2.47 16 10 C 0.25 5.90 0.85 -89.94 -0.08 5.83 16 11 O -0.59 -14.46 13.08 -35.23 -0.46 -14.92 16 12 C -0.54 -13.95 8.11 -34.44 -0.28 -14.22 16 13 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 14 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 15 N -0.90 -23.65 10.96 55.43 0.61 -23.05 16 16 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.10 2.48 5.39 -2.90 -0.02 2.47 16 21 C -0.09 -1.20 7.92 -39.22 -0.31 -1.51 16 22 C -0.15 -1.70 9.97 -39.49 -0.39 -2.10 16 23 C 0.12 1.33 6.68 -39.02 -0.26 1.07 16 24 O -0.50 -4.56 12.52 -18.83 -0.24 -4.80 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 27 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 28 H 0.14 1.96 7.88 -52.49 -0.41 1.54 16 29 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 30 H 0.07 1.12 7.28 -51.93 -0.38 0.74 16 31 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.38 9.80 7.24 45.56 0.33 10.13 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.07 1.78 8.00 -51.93 -0.42 1.36 16 36 H 0.07 1.78 7.81 -51.93 -0.41 1.38 16 37 H 0.15 1.86 4.57 -52.49 -0.24 1.62 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.39 1.73 9.06 45.56 0.41 2.14 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -30.70 323.47 -7.10 -37.80 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.47 Total: 13.41 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.91 Total: -2.72 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.04 Total: -36.03 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.61 Total: -32.63 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.70 -7.10 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.762 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds