Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37726 * 119.95473 * 2 1 4 4 C 1.39709 * 119.90660 * 180.25325 * 3 2 1 5 5 C 1.47603 * 120.08535 * 179.73840 * 4 3 2 6 6 O 1.21585 * 119.99978 * 27.14668 * 5 4 3 7 7 N 1.34781 * 120.00361 * 207.14012 * 5 4 3 8 8 C 1.47430 * 125.64656 * 356.29781 * 7 5 4 9 9 C 1.54904 * 104.83236 * 155.90616 * 8 7 5 10 10 C 1.55162 * 101.58516 * 37.00699 * 9 8 7 11 11 O 1.42893 * 110.71802 * 83.03862 * 10 9 8 12 12 C 1.50697 * 110.71945 * 206.13689 * 10 9 8 13 13 H 1.07994 * 120.00320 * 357.56064 * 12 10 9 14 14 C 1.37881 * 119.99732 * 177.28453 * 12 10 9 15 15 N 1.31513 * 120.00081 * 0.26805 * 14 12 10 16 16 Si 1.86796 * 119.99955 * 180.27453 * 14 12 10 17 17 H 1.48502 * 109.47409 * 59.99961 * 16 14 12 18 18 H 1.48503 * 109.47317 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47229 * 300.00186 * 16 14 12 20 20 C 1.47315 * 125.61876 * 176.51609 * 7 5 4 21 21 C 1.39748 * 119.82864 * 359.47248 * 4 3 2 22 22 C 1.37684 * 119.90947 * 0.26961 * 21 4 3 23 23 C 1.38974 * 119.95406 * 179.74645 * 2 1 3 24 24 O 1.35709 * 119.91394 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46960 * 270.25505 * 1 2 3 26 26 H 1.09007 * 109.46960 * 30.25924 * 1 2 3 27 27 H 1.08994 * 109.46825 * 150.25533 * 1 2 3 28 28 H 1.07996 * 120.04413 * 0.02562 * 3 2 1 29 29 H 1.08997 * 110.36285 * 37.06272 * 8 7 5 30 30 H 1.09004 * 110.36079 * 274.74559 * 8 7 5 31 31 H 1.09001 * 111.00457 * 278.93359 * 9 8 7 32 32 H 1.08996 * 111.03882 * 155.09794 * 9 8 7 33 33 H 0.96702 * 114.00191 * 182.44411 * 11 10 9 34 34 H 0.97000 * 120.00329 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.06376 * 61.68020 * 20 7 5 36 36 H 1.09003 * 109.85124 * 300.42094 * 20 7 5 37 37 H 1.07998 * 120.04979 * 180.25151 * 21 4 3 38 38 H 1.08004 * 119.95317 * 180.02562 * 22 21 4 39 39 H 0.96698 * 114.00301 * 270.02451 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1933 0.0000 4 6 3.5918 1.1921 -0.0054 5 6 4.3328 2.4687 -0.0112 6 8 3.8294 3.4659 0.4688 7 7 5.5674 2.5289 -0.5485 8 6 6.3245 1.3866 -1.0920 9 6 7.3208 2.0141 -2.0986 10 6 7.7010 3.3348 -1.3785 11 8 8.7303 3.1066 -0.4140 12 6 8.1291 4.3812 -2.3748 13 1 8.1758 4.1387 -3.4262 14 6 8.4557 5.6499 -1.9448 15 7 8.3986 5.9453 -0.6645 16 14 8.9789 6.9491 -3.1807 17 1 7.8834 7.1726 -4.1580 18 1 9.2735 8.2190 -2.4692 19 1 10.1954 6.4891 -3.8975 20 6 6.3850 3.7466 -0.6855 21 6 4.2859 -0.0208 0.0005 22 6 3.5911 -1.2094 0.0058 23 6 2.2009 -1.2041 0.0053 24 8 1.5197 -2.3778 0.0110 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3633 -0.8922 -0.5098 28 1 1.6547 2.1285 0.0004 29 1 5.6539 0.6955 -1.6027 30 1 6.8629 0.8745 -0.2945 31 1 6.8362 2.2155 -3.0539 32 1 8.1948 1.3768 -2.2329 33 1 8.9782 3.8935 0.0904 34 1 8.6287 6.8377 -0.3619 35 1 6.5991 4.1659 0.2976 36 1 5.8579 4.4795 -1.2965 37 1 5.3659 -0.0258 0.0005 38 1 4.1268 -2.1472 0.0108 39 1 1.3222 -2.7137 0.8961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -118.966386 kcal Electronic energy + Delta-G solvation = -23290.612216 eV Core-core repulsion = 19776.464392 eV Total energy + Delta-G solvation = -3514.147825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63977 -40.39642 -38.99010 -37.44517 -36.21454 -34.22377 -33.83448 -31.99726 -31.08053 -29.77125 -27.94404 -26.97174 -25.12793 -23.65855 -22.69961 -21.50563 -20.58955 -19.40822 -19.11861 -18.12391 -17.47199 -17.07191 -16.72079 -16.58578 -16.24858 -16.04074 -15.16646 -14.91861 -14.83807 -14.80332 -14.40077 -14.20219 -13.97290 -13.64320 -13.47079 -13.29927 -13.04336 -12.85038 -12.79812 -12.75826 -12.44752 -12.34030 -12.31608 -12.09876 -11.41420 -11.16425 -11.09647 -10.65330 -10.31344 -9.97464 -9.69567 -9.52304 -8.28631 -6.44785 -0.25287 0.27064 1.41630 1.42399 1.50427 1.66141 1.98599 2.36767 2.62390 2.97846 3.20977 3.46218 3.70926 3.79249 3.86889 4.04804 4.18067 4.18308 4.31037 4.33770 4.52467 4.63411 4.64993 4.74547 4.81143 4.88491 4.96743 5.07812 5.13321 5.18595 5.24437 5.29890 5.33979 5.40389 5.48706 5.72196 5.73541 6.02472 6.53740 6.63556 6.83511 7.04678 7.26105 7.33911 8.77362 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.003763 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.160883 B = 7439.638194 C = 7830.712169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.063 4.063 4 C -0.149 4.149 5 C 0.555 3.445 6 O -0.597 6.597 7 N -0.609 5.609 8 C 0.099 3.901 9 C -0.114 4.114 10 C 0.234 3.766 11 O -0.586 6.586 12 C -0.560 4.560 13 H 0.068 0.932 14 C 0.026 3.974 15 N -0.917 5.917 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.120 3.880 21 C -0.086 4.086 22 C -0.142 4.142 23 C 0.135 3.865 24 O -0.496 6.496 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.377 0.623 34 H 0.271 0.729 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 -17.018 1.318 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.152 4.152 5 C 0.346 3.654 6 O -0.480 6.480 7 N -0.340 5.340 8 C -0.022 4.022 9 C -0.152 4.152 10 C 0.194 3.806 11 O -0.395 6.395 12 C -0.598 4.598 13 H 0.086 0.914 14 C -0.175 4.175 15 N -0.556 5.556 16 Si 0.789 3.211 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.003 4.003 21 C -0.105 4.105 22 C -0.160 4.160 23 C 0.090 3.910 24 O -0.310 6.310 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.171 0.829 38 H 0.182 0.818 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.511 -16.927 0.889 20.490 hybrid contribution 0.446 2.159 0.434 2.247 sum -11.065 -14.768 1.323 18.501 Atomic orbital electron populations 1.20732 0.88384 1.03801 1.03542 1.20377 0.98347 0.91551 1.02164 1.21013 0.92010 0.98621 0.96533 1.19792 0.94559 0.92213 1.08679 1.18650 0.80208 0.89072 0.77474 1.90713 1.69238 1.39116 1.48967 1.48820 1.15103 1.11634 1.58404 1.22884 0.93921 0.88490 0.96949 1.22801 0.98902 0.95881 0.97591 1.19691 0.82364 0.92868 0.85707 1.86071 1.58157 1.40102 1.55133 1.21841 1.47014 0.96389 0.94599 0.91355 1.25823 0.94035 1.00431 0.97211 1.69742 1.48387 1.22350 1.15140 0.85518 0.78939 0.77800 0.78864 1.19880 1.20957 1.19111 1.22635 0.93216 0.85632 0.98816 1.21856 1.01788 0.90538 0.96290 1.21616 0.93422 0.99095 1.01855 1.18542 0.89928 0.85172 0.97399 1.84673 1.75805 1.34980 1.35553 0.89670 0.91316 0.89807 0.85882 0.87560 0.89679 0.89894 0.88592 0.77332 0.91993 0.94898 0.94805 0.82899 0.81781 0.72467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.78 71.24 0.70 -0.99 16 2 C -0.12 -2.67 5.89 -19.81 -0.12 -2.78 16 3 C -0.06 -1.78 9.23 22.50 0.21 -1.57 16 4 C -0.15 -4.75 5.70 -20.09 -0.11 -4.87 16 5 C 0.55 23.37 7.63 86.71 0.66 24.03 16 6 O -0.60 -30.17 16.98 -3.98 -0.07 -30.24 16 7 N -0.61 -25.59 3.33 -814.70 -2.72 -28.30 16 8 C 0.10 3.23 5.01 86.85 0.44 3.67 16 9 C -0.11 -4.30 6.23 31.99 0.20 -4.10 16 10 C 0.23 11.34 0.85 -10.35 -0.01 11.33 16 11 O -0.59 -29.49 13.08 -148.98 -1.95 -31.43 16 12 C -0.56 -29.47 8.11 25.60 0.21 -29.26 16 13 H 0.07 3.48 7.77 -2.91 -0.02 3.45 16 14 C 0.03 1.36 5.27 84.66 0.45 1.81 16 15 N -0.92 -50.24 10.96 21.45 0.24 -50.01 16 16 Si 0.96 42.20 29.54 68.60 2.03 44.22 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 C 0.12 6.07 5.39 86.67 0.47 6.54 16 21 C -0.09 -2.10 7.92 22.50 0.18 -1.93 16 22 C -0.14 -2.65 9.97 22.33 0.22 -2.43 16 23 C 0.13 2.52 6.68 22.63 0.15 2.67 16 24 O -0.50 -6.68 12.52 -90.30 -1.13 -7.81 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.09 8.09 -2.38 -0.02 1.07 16 27 H 0.08 1.15 7.52 -2.39 -0.02 1.13 16 28 H 0.12 3.70 7.88 -2.91 -0.02 3.68 16 29 H 0.11 2.76 6.17 -2.39 -0.01 2.75 16 30 H 0.09 2.54 7.28 -2.38 -0.02 2.53 16 31 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 32 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.38 19.96 7.24 -74.06 -0.54 19.43 16 34 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.03 1.85 8.00 -2.39 -0.02 1.83 16 36 H 0.03 1.89 7.81 -2.39 -0.02 1.87 16 37 H 0.15 3.43 4.57 -2.91 -0.01 3.42 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.41 1.51 9.06 -74.06 -0.67 0.84 16 Total: -1.00 -69.79 323.47 -0.07 -69.86 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.10 Total: 31.57 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 3.63 Total: 2.13 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.48 Total: -78.31 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -3.15 Total: -69.48 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.79 -0.07 -69.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.102 kcal (2) G-P(sol) polarization free energy of solvation -69.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds