Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37726 * 119.95818 * 2 1 4 4 C 1.39713 * 119.91145 * 180.25333 * 3 2 1 5 5 C 1.47601 * 120.08804 * 179.72140 * 4 3 2 6 6 O 1.21587 * 119.99915 * 7.76525 * 5 4 3 7 7 N 1.34776 * 120.00193 * 187.77259 * 5 4 3 8 8 C 1.47294 * 125.78780 * 354.84745 * 7 5 4 9 9 C 1.54329 * 107.30129 * 178.92801 * 8 7 5 10 10 C 1.55158 * 102.94361 * 337.81472 * 9 8 7 11 11 O 1.42899 * 111.00337 * 277.43055 * 10 9 8 12 12 C 1.50697 * 111.03514 * 153.59170 * 10 9 8 13 13 H 1.08000 * 120.00126 * 6.33095 * 12 10 9 14 14 C 1.37880 * 119.99733 * 186.33272 * 12 10 9 15 15 N 1.31513 * 120.00079 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99704 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47115 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47164 * 120.00282 * 16 14 12 19 19 H 1.48505 * 109.46536 * 239.99604 * 16 14 12 20 20 C 1.47425 * 125.65211 * 174.84976 * 7 5 4 21 21 C 1.39753 * 119.82347 * 359.44057 * 4 3 2 22 22 C 1.37683 * 119.91002 * 0.27810 * 21 4 3 23 23 C 1.38982 * 119.95614 * 179.67270 * 2 1 3 24 24 O 1.35710 * 119.90886 * 0.02571 * 23 2 1 25 25 H 1.08995 * 109.47475 * 270.32627 * 1 2 3 26 26 H 1.09004 * 109.47048 * 30.32714 * 1 2 3 27 27 H 1.08995 * 109.46919 * 150.32601 * 1 2 3 28 28 H 1.08004 * 120.04154 * 359.96922 * 3 2 1 29 29 H 1.08993 * 109.86107 * 59.50595 * 8 7 5 30 30 H 1.08996 * 110.00288 * 298.42638 * 8 7 5 31 31 H 1.09000 * 110.71563 * 219.45388 * 9 8 7 32 32 H 1.09000 * 110.72143 * 96.18060 * 9 8 7 33 33 H 0.96705 * 114.00028 * 173.65155 * 11 10 9 34 34 H 0.97002 * 119.99689 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.36465 * 85.25711 * 20 7 5 36 36 H 1.08999 * 110.36468 * 323.04276 * 20 7 5 37 37 H 1.07993 * 120.04164 * 180.25536 * 21 4 3 38 38 H 1.08000 * 119.95181 * 179.97438 * 22 21 4 39 39 H 0.96704 * 113.99701 * 269.97675 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1932 0.0000 4 6 3.5919 1.1921 -0.0054 5 6 4.3329 2.4686 -0.0116 6 8 3.7363 3.5185 0.1302 7 7 5.6707 2.4705 -0.1746 8 6 6.5310 1.2772 -0.2497 9 6 7.9782 1.7676 -0.4659 10 6 7.7791 3.1844 -1.0662 11 8 7.5355 3.1152 -2.4726 12 6 8.9622 4.0691 -0.7687 13 1 9.8397 3.6558 -0.2938 14 6 8.9244 5.4062 -1.1029 15 7 7.8556 5.9097 -1.6808 16 14 10.3913 6.5028 -0.7347 17 1 11.4587 5.7001 -0.0856 18 1 10.9071 7.0812 -2.0014 19 1 9.9735 7.5989 0.1759 20 6 6.5185 3.6692 -0.3075 21 6 4.2860 -0.0209 0.0011 22 6 3.5911 -1.2095 0.0070 23 6 2.2010 -1.2041 0.0069 24 8 1.5197 -2.3778 0.0131 25 1 -0.3634 0.0059 1.0276 26 1 -0.3633 0.8871 -0.5189 27 1 -0.3633 -0.8929 -0.5087 28 1 1.6548 2.1286 -0.0005 29 1 6.2229 0.6508 -1.0868 30 1 6.4662 0.7117 0.6798 31 1 8.5033 1.1211 -1.1691 32 1 8.5127 1.8222 0.4825 33 1 7.3092 3.9650 -2.8749 34 1 7.8292 6.8503 -1.9162 35 1 6.7914 4.0518 0.6760 36 1 6.0017 4.4374 -0.8827 37 1 5.3659 -0.0258 0.0012 38 1 4.1268 -2.1472 0.0116 39 1 1.3222 -2.7133 0.8983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -81.643160 kcal Electronic energy + Delta-G solvation = -23347.520226 eV Core-core repulsion = 19834.990858 eV Total energy + Delta-G solvation = -3512.529368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.39431 -39.12207 -37.32237 -36.39717 -34.49933 -32.80575 -32.25955 -30.55530 -29.82669 -28.32139 -26.71841 -25.27573 -23.74218 -22.48522 -21.48118 -19.79081 -19.24350 -18.48433 -17.21105 -16.68598 -15.99969 -15.69814 -15.21667 -15.16181 -14.78751 -14.42379 -14.12871 -13.62970 -13.37687 -13.22092 -13.10659 -12.84528 -12.79919 -12.23500 -12.14087 -11.84930 -11.79040 -11.57733 -11.29324 -11.07394 -10.86940 -10.68973 -10.48610 -10.31599 -10.18943 -9.43282 -9.37890 -8.92301 -8.72381 -8.59973 -8.39894 -7.84657 -6.30419 -4.40339 0.81938 1.28282 3.01894 3.18291 3.27496 3.30538 3.56001 3.87416 4.08373 4.24669 4.70237 4.77676 4.79887 4.97224 5.18101 5.23765 5.36069 5.44674 5.48955 5.51859 5.60919 5.73571 5.84502 5.89746 5.96848 6.08660 6.23015 6.32784 6.40096 6.43530 6.65073 6.68181 6.80749 6.94629 7.21126 7.31667 7.45828 7.71377 7.98382 8.14818 8.62759 8.68662 9.26615 9.35096 10.76728 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.003756 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.617243 B = 7452.944767 C = 7936.910752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.124 4.124 3 C -0.050 4.050 4 C -0.125 4.125 5 C 0.562 3.438 6 O -0.548 6.548 7 N -0.602 5.602 8 C 0.093 3.907 9 C -0.121 4.121 10 C 0.248 3.752 11 O -0.582 6.582 12 C -0.538 4.538 13 H 0.068 0.932 14 C 0.071 3.929 15 N -0.892 5.892 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.095 3.905 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.117 3.883 24 O -0.497 6.497 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.382 0.618 34 H 0.270 0.730 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 -13.582 4.927 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C -0.069 4.069 4 C -0.128 4.128 5 C 0.351 3.649 6 O -0.428 6.428 7 N -0.333 5.333 8 C -0.029 4.029 9 C -0.159 4.159 10 C 0.208 3.792 11 O -0.391 6.391 12 C -0.576 4.576 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.026 4.026 21 C -0.131 4.131 22 C -0.169 4.169 23 C 0.073 3.927 24 O -0.307 6.307 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.411 -13.422 4.431 16.981 hybrid contribution 0.555 1.145 0.598 1.406 sum -8.856 -12.277 5.029 15.952 Atomic orbital electron populations 1.20671 0.90402 1.03293 1.02269 1.20136 0.96890 0.92222 1.03247 1.21072 0.92706 0.97880 0.95243 1.20113 0.94134 0.93634 1.04929 1.17814 0.80965 0.88406 0.77735 1.90750 1.67709 1.33127 1.51255 1.48702 1.05255 1.09995 1.69380 1.22514 0.92328 0.88482 0.99623 1.22704 0.93289 0.98628 1.01237 1.19635 0.90463 0.89840 0.79297 1.86107 1.92541 1.37463 1.22972 1.21487 1.01391 0.93647 1.41116 0.91417 1.25086 0.96305 0.98091 0.93747 1.69723 1.27778 1.14749 1.40809 0.86347 0.82187 0.80186 0.78174 1.19571 1.20739 1.20773 1.23314 0.91949 0.86300 1.01015 1.22761 1.03261 0.91040 0.96062 1.21372 0.93194 0.98920 1.03374 1.18533 0.89855 0.84713 0.99648 1.84734 1.76296 1.36336 1.33311 0.91356 0.91252 0.90911 0.84423 0.91055 0.91647 0.90464 0.90171 0.76855 0.92015 0.91948 0.89433 0.81582 0.85005 0.75518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.78 36.01 0.35 -0.70 16 2 C -0.12 -1.55 5.89 -104.53 -0.62 -2.17 16 3 C -0.05 -0.75 9.23 -39.22 -0.36 -1.11 16 4 C -0.12 -2.08 5.87 -104.96 -0.62 -2.69 16 5 C 0.56 11.60 7.80 -12.44 -0.10 11.50 16 6 O -0.55 -13.11 16.66 5.29 0.09 -13.02 16 7 N -0.60 -12.36 3.34 -175.01 -0.58 -12.95 16 8 C 0.09 1.56 4.88 -2.91 -0.01 1.55 16 9 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 10 C 0.25 5.86 0.87 -89.62 -0.08 5.78 16 11 O -0.58 -14.54 13.16 -35.23 -0.46 -15.00 16 12 C -0.54 -13.72 8.27 -34.44 -0.28 -14.01 16 13 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 14 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 15 N -0.89 -23.58 10.69 55.43 0.59 -22.99 16 16 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.10 2.26 5.36 -2.53 -0.01 2.25 16 21 C -0.11 -1.57 8.60 -39.22 -0.34 -1.91 16 22 C -0.15 -1.79 9.97 -39.50 -0.39 -2.18 16 23 C 0.12 1.39 6.68 -39.02 -0.26 1.12 16 24 O -0.50 -4.76 12.52 -18.83 -0.24 -5.00 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 28 H 0.14 2.07 7.66 -52.48 -0.40 1.67 16 29 H 0.07 1.12 6.69 -51.93 -0.35 0.78 16 30 H 0.07 0.90 6.79 -51.93 -0.35 0.55 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 33 H 0.38 9.83 7.57 45.56 0.34 10.18 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.06 1.53 8.03 -51.93 -0.42 1.11 16 36 H 0.09 2.35 7.37 -51.93 -0.38 1.97 16 37 H 0.17 2.13 2.77 -57.05 -0.16 1.97 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.39 1.83 9.06 45.56 0.41 2.24 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -30.85 321.87 -7.08 -37.93 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -3.34 Total: 14.35 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.97 Total: -3.26 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.01 Total: -35.94 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.61 Total: -33.02 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.85 -7.08 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.715 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds