Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37726 * 119.95818 * 2 1 4 4 C 1.39713 * 119.91145 * 180.25333 * 3 2 1 5 5 C 1.47601 * 120.08804 * 179.72140 * 4 3 2 6 6 O 1.21587 * 119.99915 * 7.76525 * 5 4 3 7 7 N 1.34776 * 120.00193 * 187.77259 * 5 4 3 8 8 C 1.47294 * 125.78780 * 354.84745 * 7 5 4 9 9 C 1.54329 * 107.30129 * 178.92801 * 8 7 5 10 10 C 1.55158 * 102.94361 * 337.81472 * 9 8 7 11 11 O 1.42899 * 111.00337 * 277.43055 * 10 9 8 12 12 C 1.50697 * 111.03514 * 153.59170 * 10 9 8 13 13 H 1.08000 * 120.00126 * 6.33095 * 12 10 9 14 14 C 1.37880 * 119.99733 * 186.33272 * 12 10 9 15 15 N 1.31513 * 120.00079 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99704 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47115 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47164 * 120.00282 * 16 14 12 19 19 H 1.48505 * 109.46536 * 239.99604 * 16 14 12 20 20 C 1.47425 * 125.65211 * 174.84976 * 7 5 4 21 21 C 1.39753 * 119.82347 * 359.44057 * 4 3 2 22 22 C 1.37683 * 119.91002 * 0.27810 * 21 4 3 23 23 C 1.38982 * 119.95614 * 179.67270 * 2 1 3 24 24 O 1.35710 * 119.90886 * 0.02571 * 23 2 1 25 25 H 1.08995 * 109.47475 * 270.32627 * 1 2 3 26 26 H 1.09004 * 109.47048 * 30.32714 * 1 2 3 27 27 H 1.08995 * 109.46919 * 150.32601 * 1 2 3 28 28 H 1.08004 * 120.04154 * 359.96922 * 3 2 1 29 29 H 1.08993 * 109.86107 * 59.50595 * 8 7 5 30 30 H 1.08996 * 110.00288 * 298.42638 * 8 7 5 31 31 H 1.09000 * 110.71563 * 219.45388 * 9 8 7 32 32 H 1.09000 * 110.72143 * 96.18060 * 9 8 7 33 33 H 0.96705 * 114.00028 * 173.65155 * 11 10 9 34 34 H 0.97002 * 119.99689 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.36465 * 85.25711 * 20 7 5 36 36 H 1.08999 * 110.36468 * 323.04276 * 20 7 5 37 37 H 1.07993 * 120.04164 * 180.25536 * 21 4 3 38 38 H 1.08000 * 119.95181 * 179.97438 * 22 21 4 39 39 H 0.96704 * 113.99701 * 269.97675 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1932 0.0000 4 6 3.5919 1.1921 -0.0054 5 6 4.3329 2.4686 -0.0116 6 8 3.7363 3.5185 0.1302 7 7 5.6707 2.4705 -0.1746 8 6 6.5310 1.2772 -0.2497 9 6 7.9782 1.7676 -0.4659 10 6 7.7791 3.1844 -1.0662 11 8 7.5355 3.1152 -2.4726 12 6 8.9622 4.0691 -0.7687 13 1 9.8397 3.6558 -0.2938 14 6 8.9244 5.4062 -1.1029 15 7 7.8556 5.9097 -1.6808 16 14 10.3913 6.5028 -0.7347 17 1 11.4587 5.7001 -0.0856 18 1 10.9071 7.0812 -2.0014 19 1 9.9735 7.5989 0.1759 20 6 6.5185 3.6692 -0.3075 21 6 4.2860 -0.0209 0.0011 22 6 3.5911 -1.2095 0.0070 23 6 2.2010 -1.2041 0.0069 24 8 1.5197 -2.3778 0.0131 25 1 -0.3634 0.0059 1.0276 26 1 -0.3633 0.8871 -0.5189 27 1 -0.3633 -0.8929 -0.5087 28 1 1.6548 2.1286 -0.0005 29 1 6.2229 0.6508 -1.0868 30 1 6.4662 0.7117 0.6798 31 1 8.5033 1.1211 -1.1691 32 1 8.5127 1.8222 0.4825 33 1 7.3092 3.9650 -2.8749 34 1 7.8292 6.8503 -1.9162 35 1 6.7914 4.0518 0.6760 36 1 6.0017 4.4374 -0.8827 37 1 5.3659 -0.0258 0.0012 38 1 4.1268 -2.1472 0.0116 39 1 1.3222 -2.7133 0.8983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -105.368304 kcal Electronic energy + Delta-G solvation = -23348.549026 eV Core-core repulsion = 19834.990858 eV Total energy + Delta-G solvation = -3513.558168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67184 -40.37640 -38.95149 -37.44922 -36.22201 -34.24444 -33.82657 -32.03495 -31.08238 -29.87314 -27.93115 -26.91092 -25.22902 -23.63124 -22.63038 -21.52896 -20.72059 -19.39536 -19.07543 -18.05725 -17.38735 -16.96886 -16.78540 -16.58846 -16.17209 -16.11820 -15.26298 -14.92454 -14.85163 -14.71965 -14.42583 -14.25694 -13.95327 -13.52528 -13.46530 -13.23164 -13.03852 -12.86647 -12.83297 -12.70682 -12.39964 -12.27247 -12.18608 -12.08996 -11.40001 -11.13238 -10.99239 -10.65742 -10.31761 -9.96183 -9.65771 -9.46542 -8.25747 -6.43046 -0.27666 0.28641 1.40557 1.44067 1.54851 1.71698 2.02242 2.38335 2.69410 3.00716 3.20683 3.48351 3.70768 3.78543 3.88169 4.05094 4.13567 4.21615 4.28292 4.37045 4.50403 4.64245 4.70967 4.75173 4.80439 4.89295 5.02724 5.05277 5.15247 5.21740 5.24653 5.31668 5.36859 5.42337 5.47906 5.74610 5.75113 6.05672 6.56179 6.67334 6.83480 7.08335 7.25484 7.33804 8.79679 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.003756 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.617243 B = 7452.944767 C = 7936.910752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.153 4.153 5 C 0.554 3.446 6 O -0.599 6.599 7 N -0.607 5.607 8 C 0.093 3.907 9 C -0.115 4.115 10 C 0.231 3.769 11 O -0.587 6.587 12 C -0.554 4.554 13 H 0.072 0.928 14 C 0.025 3.975 15 N -0.917 5.917 16 Si 0.965 3.035 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.284 1.284 20 C 0.109 3.891 21 C -0.109 4.109 22 C -0.145 4.145 23 C 0.134 3.866 24 O -0.496 6.496 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.372 0.628 34 H 0.268 0.732 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.178 0.822 38 H 0.165 0.835 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 -17.062 5.728 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.082 4.082 4 C -0.156 4.156 5 C 0.345 3.655 6 O -0.483 6.483 7 N -0.338 5.338 8 C -0.028 4.028 9 C -0.152 4.152 10 C 0.191 3.809 11 O -0.394 6.394 12 C -0.592 4.592 13 H 0.090 0.910 14 C -0.176 4.176 15 N -0.556 5.556 16 Si 0.790 3.210 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.014 4.014 21 C -0.126 4.126 22 C -0.163 4.163 23 C 0.089 3.911 24 O -0.310 6.310 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.221 0.779 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.194 0.806 38 H 0.183 0.817 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -9.307 -16.967 5.255 20.053 hybrid contribution 0.421 2.121 0.359 2.192 sum -8.886 -14.846 5.614 18.191 Atomic orbital electron populations 1.20723 0.88428 1.03691 1.03564 1.20387 0.98348 0.91605 1.02455 1.21056 0.92322 0.98553 0.96312 1.19857 0.94507 0.92458 1.08827 1.18586 0.80859 0.89557 0.76448 1.90701 1.68650 1.35339 1.53581 1.48745 1.05589 1.10107 1.69333 1.22797 0.90142 0.87313 1.02498 1.22727 0.95120 0.95641 1.01738 1.19889 0.89605 0.92864 0.78552 1.86097 1.92525 1.36811 1.23965 1.21843 1.02118 0.94290 1.40997 0.91020 1.25850 0.98556 0.99497 0.93696 1.69855 1.29343 1.14792 1.41655 0.85402 0.79432 0.78361 0.77802 1.18531 1.20668 1.21011 1.22856 0.92437 0.86871 0.99231 1.22795 1.03717 0.90491 0.95623 1.21678 0.93356 0.99298 1.01943 1.18602 0.90072 0.85118 0.97307 1.84677 1.75852 1.34984 1.35537 0.89542 0.91486 0.89872 0.85974 0.89356 0.87470 0.89016 0.88814 0.77914 0.92241 0.93779 0.93734 0.80574 0.81722 0.72468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.78 71.24 0.70 -1.11 16 2 C -0.13 -2.91 5.89 -19.81 -0.12 -3.03 16 3 C -0.06 -1.89 9.23 22.51 0.21 -1.69 16 4 C -0.15 -5.06 5.87 -20.08 -0.12 -5.18 16 5 C 0.55 23.70 7.80 86.71 0.68 24.38 16 6 O -0.60 -30.63 16.66 -3.99 -0.07 -30.70 16 7 N -0.61 -25.36 3.34 -825.87 -2.75 -28.12 16 8 C 0.09 2.94 4.88 86.68 0.42 3.37 16 9 C -0.11 -4.13 6.13 31.79 0.19 -3.94 16 10 C 0.23 11.06 0.87 -10.15 -0.01 11.05 16 11 O -0.59 -29.95 13.16 -148.98 -1.96 -31.91 16 12 C -0.55 -28.54 8.27 25.60 0.21 -28.33 16 13 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 14 C 0.02 1.30 5.29 84.66 0.45 1.74 16 15 N -0.92 -50.48 10.69 21.45 0.23 -50.25 16 16 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 C 0.11 5.42 5.36 86.85 0.47 5.88 16 21 C -0.11 -2.71 8.60 22.50 0.19 -2.52 16 22 C -0.14 -2.82 9.97 22.32 0.22 -2.60 16 23 C 0.13 2.66 6.68 22.63 0.15 2.81 16 24 O -0.50 -7.12 12.52 -90.31 -1.13 -8.25 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 27 H 0.08 1.24 7.52 -2.39 -0.02 1.22 16 28 H 0.12 3.92 7.66 -2.91 -0.02 3.89 16 29 H 0.09 2.52 6.69 -2.39 -0.02 2.51 16 30 H 0.11 2.53 6.79 -2.39 -0.02 2.52 16 31 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 33 H 0.37 20.14 7.57 -74.05 -0.56 19.57 16 34 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.04 2.29 8.03 -2.39 -0.02 2.27 16 36 H 0.04 2.56 7.37 -2.39 -0.02 2.55 16 37 H 0.18 3.88 2.77 -7.19 -0.02 3.86 16 38 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.41 1.73 9.06 -74.05 -0.67 1.06 16 Total: -1.00 -70.62 321.87 -0.14 -70.76 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.13 Total: 33.87 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 3.65 Total: 0.85 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.53 Total: -78.37 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: -3.16 Total: -70.86 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.62 -0.14 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.607 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds