Wall clock time and date at job start Tue Mar 31 2020 07:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47343 * 2 1 4 4 H 1.08997 * 109.51050 * 55.10065 * 3 2 1 5 5 C 1.53706 * 109.44341 * 175.38877 * 3 2 1 6 6 N 1.47153 * 108.15825 * 172.37077 * 5 3 2 7 7 S 1.65606 * 120.97959 * 129.43305 * 6 5 3 8 8 O 1.42094 * 104.27817 * 153.64819 * 7 6 5 9 9 O 1.42106 * 104.27580 * 25.79050 * 7 6 5 10 10 C 1.81396 * 104.45103 * 269.72035 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.47152 * 118.04149 * 309.16299 * 6 5 3 21 21 H 1.08996 * 109.68560 * 170.51009 * 20 6 5 22 22 C 1.53005 * 109.67627 * 291.06248 * 20 6 5 23 23 C 1.53295 * 108.38588 * 50.78078 * 20 6 5 24 24 O 1.42964 * 109.22261 * 307.70250 * 23 20 6 25 25 H 1.09002 * 109.47222 * 59.99933 * 1 2 3 26 26 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47153 * 299.99685 * 1 2 3 28 28 H 1.09006 * 109.46878 * 239.99856 * 2 1 3 29 29 H 1.09002 * 109.47222 * 120.00067 * 2 1 3 30 30 H 1.09002 * 109.83675 * 52.69737 * 5 3 2 31 31 H 1.08988 * 109.74965 * 292.00059 * 5 3 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47502 * 59.99969 * 22 20 6 38 38 H 1.09001 * 109.46700 * 180.02562 * 22 20 6 39 39 H 1.08998 * 109.47083 * 299.99354 * 22 20 6 40 40 H 1.09005 * 109.50942 * 67.62163 * 23 20 6 41 41 H 1.08997 * 109.51494 * 187.78018 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 0.8426 5 6 3.5727 1.4433 0.1165 6 7 4.0462 2.8239 -0.0708 7 16 5.0895 3.5213 1.0098 8 8 5.7813 4.5004 0.2470 9 8 5.7792 2.4226 1.5899 10 6 4.0105 4.3136 2.2339 11 6 4.8667 5.0008 3.2996 12 6 3.9703 5.6596 4.3162 13 1 2.8972 5.5943 4.2128 14 6 4.5201 6.3448 5.3789 15 7 5.8268 6.4238 5.5050 16 14 3.4090 7.1607 6.6394 17 1 2.5500 6.1331 7.2810 18 1 4.2400 7.8278 7.6737 19 1 2.5536 8.1704 5.9655 20 6 3.5700 3.5645 -1.2499 21 1 3.8629 4.6113 -1.1689 22 6 4.1729 2.9567 -2.5181 23 6 2.0417 3.4585 -1.3027 24 8 1.6622 2.0825 -1.2213 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0024 0.8004 -0.6518 31 1 3.8672 1.0848 1.1027 32 1 3.3806 3.5593 2.7053 33 1 3.3821 5.0541 1.7391 34 1 5.4970 5.7551 2.8284 35 1 5.4948 4.2599 3.7943 36 1 6.2135 6.9062 6.2524 37 1 3.8699 1.9129 -2.6003 38 1 3.8184 3.5080 -3.3890 39 1 5.2601 3.0167 -2.4684 40 1 1.6096 4.0055 -0.4647 41 1 1.6796 3.8811 -2.2399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593642700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:40 Heat of formation + Delta-G solvation = -132.887529 kcal Electronic energy + Delta-G solvation = -22717.812648 eV Core-core repulsion = 19338.505108 eV Total energy + Delta-G solvation = -3379.307540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76399 -36.74215 -35.59267 -35.27464 -34.17349 -33.92454 -31.29331 -31.19123 -27.97960 -26.26224 -25.62527 -24.06266 -21.99043 -21.59485 -20.25146 -18.48041 -17.75279 -16.81240 -16.62835 -15.92383 -15.63309 -15.29520 -15.10857 -14.73232 -14.58438 -13.95244 -13.86093 -13.45425 -13.34844 -12.88140 -12.56181 -12.39045 -12.11192 -12.00482 -11.80108 -11.66184 -11.63036 -11.46288 -11.26174 -11.19597 -11.10175 -11.08934 -11.00439 -10.54788 -10.41945 -10.39860 -10.22250 -9.72293 -9.24579 -8.69949 -8.53019 -6.15148 -4.21169 0.67832 2.90327 3.25032 3.30068 3.31712 3.59738 4.24588 4.35210 4.37682 4.57678 4.65042 4.77398 4.91909 4.95257 5.08428 5.10432 5.19869 5.26240 5.35898 5.42263 5.48447 5.53070 5.58694 5.64799 5.68965 5.77353 5.79194 5.83607 5.95170 6.10530 6.15208 6.24400 6.43293 6.57420 7.05714 7.25628 7.31683 7.77217 8.14003 8.81850 9.43748 10.95839 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018084 B = 0.004758 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.938648 B = 5883.720695 C = 6619.034207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.066 0.934 5 C 0.095 3.905 6 N -1.006 6.006 7 S 2.588 3.412 8 O -0.961 6.961 9 O -0.962 6.962 10 C -0.589 4.589 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.114 3.886 21 H 0.105 0.895 22 C -0.154 4.154 23 C 0.054 3.946 24 O -0.371 6.371 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -10.104 -13.997 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.084 0.916 5 C -0.031 4.031 6 N -0.842 5.842 7 S 2.688 3.312 8 O -0.952 6.952 9 O -0.953 6.953 10 C -0.722 4.722 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.201 1.201 20 C 0.007 3.993 21 H 0.123 0.877 22 C -0.212 4.212 23 C -0.025 4.025 24 O -0.289 6.289 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.462 -10.186 -14.115 19.354 hybrid contribution -0.973 0.818 1.175 1.731 sum -9.435 -9.368 -12.940 18.553 Atomic orbital electron populations 1.21701 0.95065 1.01475 1.02357 1.21524 0.96879 0.93927 1.03055 1.22660 0.93480 0.94538 0.87778 0.91568 1.22123 0.94430 0.82929 1.03645 1.58234 1.66533 1.22132 1.37280 1.05819 0.75710 0.74598 0.75111 1.93534 1.70564 1.62193 1.68874 1.93536 1.70668 1.52286 1.78785 1.30506 1.14850 1.11991 1.14881 1.18958 0.94538 0.95858 0.91660 1.20950 0.92810 1.34018 1.08329 0.92127 1.25063 0.95195 0.96157 0.97986 1.69943 1.10024 1.41761 1.31079 0.86525 0.80328 0.79587 0.80800 1.20066 1.21024 1.20070 1.21617 0.94767 0.96994 0.85894 0.87680 1.21995 1.01352 1.01811 0.96084 1.22986 0.93293 0.83405 1.02793 1.87907 1.79375 1.23606 1.38057 0.91982 0.92798 0.92804 0.90938 0.90199 0.90543 0.88368 0.86359 0.86352 0.94870 0.94877 0.92428 0.91783 0.91642 0.92090 0.92425 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.86 16 2 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 3 C 0.07 0.79 2.79 -26.36 -0.07 0.72 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C 0.09 1.14 5.42 -3.32 -0.02 1.12 16 6 N -1.01 -13.98 2.96 -105.80 -0.31 -14.29 16 7 S 2.59 46.99 5.42 -107.50 -0.58 46.40 16 8 O -0.96 -19.87 16.81 -57.54 -0.97 -20.84 16 9 O -0.96 -19.97 16.80 -57.54 -0.97 -20.93 16 10 C -0.59 -11.22 6.12 37.16 0.23 -10.99 16 11 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 12 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.11 1.36 3.09 -67.42 -0.21 1.15 16 21 H 0.11 1.27 7.23 -51.93 -0.38 0.90 16 22 C -0.15 -1.68 9.24 37.16 0.34 -1.33 16 23 C 0.05 0.54 6.36 37.31 0.24 0.78 16 24 O -0.37 -4.11 9.55 -35.23 -0.34 -4.44 16 25 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.86 7.65 -51.93 -0.40 0.46 16 31 H 0.10 1.18 7.22 -51.94 -0.37 0.80 16 32 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 33 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.06 0.69 7.21 -51.93 -0.37 0.31 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -33.86 342.73 -9.08 -42.94 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.96 Total: -1.34 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.42 Total: -39.93 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.27 Total: -46.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 46.99 SS G_CDS: -0.58 Total: 46.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.86 -9.08 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.946 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds