Wall clock time and date at job start Tue Mar 31 2020 07:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47343 * 2 1 4 4 H 1.08997 * 109.51050 * 55.10065 * 3 2 1 5 5 C 1.53706 * 109.44341 * 175.38877 * 3 2 1 6 6 N 1.47153 * 108.15825 * 172.37077 * 5 3 2 7 7 S 1.65606 * 120.97959 * 129.43305 * 6 5 3 8 8 O 1.42094 * 104.27817 * 153.64819 * 7 6 5 9 9 O 1.42106 * 104.27580 * 25.79050 * 7 6 5 10 10 C 1.81396 * 104.45103 * 269.72035 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.47152 * 118.04149 * 309.16299 * 6 5 3 21 21 H 1.08996 * 109.68560 * 170.51009 * 20 6 5 22 22 C 1.53005 * 109.67627 * 291.06248 * 20 6 5 23 23 C 1.53295 * 108.38588 * 50.78078 * 20 6 5 24 24 O 1.42964 * 109.22261 * 307.70250 * 23 20 6 25 25 H 1.09002 * 109.47222 * 59.99933 * 1 2 3 26 26 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47153 * 299.99685 * 1 2 3 28 28 H 1.09006 * 109.46878 * 239.99856 * 2 1 3 29 29 H 1.09002 * 109.47222 * 120.00067 * 2 1 3 30 30 H 1.09002 * 109.83675 * 52.69737 * 5 3 2 31 31 H 1.08988 * 109.74965 * 292.00059 * 5 3 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47502 * 59.99969 * 22 20 6 38 38 H 1.09001 * 109.46700 * 180.02562 * 22 20 6 39 39 H 1.08998 * 109.47083 * 299.99354 * 22 20 6 40 40 H 1.09005 * 109.50942 * 67.62163 * 23 20 6 41 41 H 1.08997 * 109.51494 * 187.78018 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 0.8426 5 6 3.5727 1.4433 0.1165 6 7 4.0462 2.8239 -0.0708 7 16 5.0895 3.5213 1.0098 8 8 5.7813 4.5004 0.2470 9 8 5.7792 2.4226 1.5899 10 6 4.0105 4.3136 2.2339 11 6 4.8667 5.0008 3.2996 12 6 3.9703 5.6596 4.3162 13 1 2.8972 5.5943 4.2128 14 6 4.5201 6.3448 5.3789 15 7 5.8268 6.4238 5.5050 16 14 3.4090 7.1607 6.6394 17 1 2.5500 6.1331 7.2810 18 1 4.2400 7.8278 7.6737 19 1 2.5536 8.1704 5.9655 20 6 3.5700 3.5645 -1.2499 21 1 3.8629 4.6113 -1.1689 22 6 4.1729 2.9567 -2.5181 23 6 2.0417 3.4585 -1.3027 24 8 1.6622 2.0825 -1.2213 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0024 0.8004 -0.6518 31 1 3.8672 1.0848 1.1027 32 1 3.3806 3.5593 2.7053 33 1 3.3821 5.0541 1.7391 34 1 5.4970 5.7551 2.8284 35 1 5.4948 4.2599 3.7943 36 1 6.2135 6.9062 6.2524 37 1 3.8699 1.9129 -2.6003 38 1 3.8184 3.5080 -3.3890 39 1 5.2601 3.0167 -2.4684 40 1 1.6096 4.0055 -0.4647 41 1 1.6796 3.8811 -2.2399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593642700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:39 Heat of formation + Delta-G solvation = -156.970278 kcal Electronic energy + Delta-G solvation = -22718.856954 eV Core-core repulsion = 19338.505108 eV Total energy + Delta-G solvation = -3380.351846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65148 -38.30849 -37.10242 -36.30126 -35.91781 -34.97942 -33.16256 -32.14309 -28.89579 -27.60652 -27.09943 -24.92639 -23.65367 -22.62665 -21.27072 -19.76862 -19.18381 -18.47175 -17.74294 -17.21128 -17.05687 -16.58855 -16.34360 -16.01982 -15.83881 -15.18031 -14.92710 -14.58337 -14.49046 -14.21076 -13.77697 -13.67403 -13.40335 -13.27681 -13.26345 -12.97319 -12.92763 -12.83209 -12.78433 -12.43685 -12.27286 -12.21058 -12.15242 -11.93567 -11.82746 -11.78810 -11.44899 -11.20726 -10.84443 -10.65774 -9.75735 -8.27606 -6.42249 -0.80105 1.40175 1.43504 1.51783 1.61473 2.36891 2.78523 2.82417 3.05386 3.07057 3.55634 3.70075 3.92815 3.98480 4.05475 4.09069 4.12618 4.25310 4.27962 4.50980 4.58674 4.63852 4.69117 4.73548 4.77808 4.84422 4.92842 5.02652 5.17253 5.19641 5.22576 5.23674 5.27276 5.36847 5.50903 5.54754 5.65703 6.03346 6.24684 6.70925 7.28255 8.84513 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018084 B = 0.004758 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.938648 B = 5883.720695 C = 6619.034207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.076 3.924 4 H 0.067 0.933 5 C 0.087 3.913 6 N -0.997 5.997 7 S 2.609 3.391 8 O -0.990 6.990 9 O -0.992 6.992 10 C -0.585 4.585 11 C 0.022 3.978 12 C -0.540 4.540 13 H 0.076 0.924 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.103 3.897 21 H 0.102 0.898 22 C -0.151 4.151 23 C 0.055 3.945 24 O -0.375 6.375 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.006 0.994 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -10.530 -14.691 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.017 3.983 4 H 0.085 0.915 5 C -0.038 4.038 6 N -0.835 5.835 7 S 2.709 3.291 8 O -0.981 6.981 9 O -0.983 6.983 10 C -0.718 4.718 11 C -0.017 4.017 12 C -0.579 4.579 13 H 0.094 0.906 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.003 4.003 21 H 0.120 0.880 22 C -0.210 4.210 23 C -0.023 4.023 24 O -0.293 6.293 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.102 -10.613 -14.810 21.336 hybrid contribution -0.146 0.900 1.296 1.585 sum -11.247 -9.713 -13.514 20.087 Atomic orbital electron populations 1.21674 0.94618 1.02131 1.01894 1.21556 0.97187 0.92702 1.03813 1.22711 0.92044 0.95769 0.87780 0.91549 1.22387 0.95807 0.81638 1.03964 1.57870 1.66029 1.22893 1.36756 1.04877 0.75648 0.73733 0.74883 1.93489 1.71797 1.63348 1.69420 1.93489 1.71931 1.53107 1.79725 1.30386 1.14604 1.12869 1.13893 1.18809 0.94830 0.94950 0.93105 1.21463 0.93818 1.33852 1.08785 0.90610 1.26115 0.96669 0.96854 1.00448 1.70095 1.12249 1.42949 1.32071 0.85363 0.78282 0.78791 0.77816 1.18730 1.20945 1.18729 1.21947 0.96413 0.96705 0.85218 0.88010 1.21992 1.00158 1.02355 0.96465 1.23108 0.91508 0.83254 1.04469 1.87917 1.79202 1.24012 1.38180 0.92689 0.91635 0.92975 0.90529 0.89165 0.89601 0.88570 0.84197 0.84114 0.97610 0.97642 0.92342 0.91490 0.89135 0.93900 0.92016 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.81 71.98 0.71 -1.35 16 2 C -0.11 -1.71 5.65 30.60 0.17 -1.53 16 3 C 0.08 1.44 2.79 30.83 0.09 1.53 16 4 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 5 C 0.09 1.96 5.42 86.49 0.47 2.43 16 6 N -1.00 -26.62 2.96 -488.64 -1.45 -28.07 16 7 S 2.61 95.51 5.42 -56.49 -0.31 95.21 16 8 O -0.99 -41.74 16.81 -127.65 -2.15 -43.89 16 9 O -0.99 -41.96 16.80 -127.65 -2.14 -44.11 16 10 C -0.59 -22.15 6.12 71.98 0.44 -21.71 16 11 C 0.02 1.15 4.98 29.85 0.15 1.30 16 12 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 13 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 16 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.10 2.28 3.09 44.97 0.14 2.42 16 21 H 0.10 2.34 7.23 -2.39 -0.02 2.32 16 22 C -0.15 -3.02 9.24 71.98 0.66 -2.35 16 23 C 0.05 0.96 6.36 72.08 0.46 1.41 16 24 O -0.37 -7.25 9.55 -148.98 -1.42 -8.67 16 25 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.78 7.65 -2.39 -0.02 1.77 16 31 H 0.10 2.21 7.22 -2.39 -0.02 2.19 16 32 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.07 1.29 7.21 -2.39 -0.02 1.28 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -73.86 342.73 -0.19 -74.05 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.99 Total: 14.13 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.98 Total: -47.08 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.16 Total: -84.55 kcal Atomic # 8 Polarization: -90.95 SS G_CDS: -5.71 Total: -96.67 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 95.51 SS G_CDS: -0.31 Total: 95.21 kcal Total: -73.86 -0.19 -74.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.924 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds