Wall clock time and date at job start Tue Mar 31 2020 07:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.09000 * 109.50851 * 305.10184 * 3 2 1 5 5 C 1.53289 * 109.51819 * 184.99854 * 3 2 1 6 6 N 1.47147 * 108.39072 * 187.77380 * 5 3 2 7 7 S 1.65601 * 120.98348 * 230.51834 * 6 5 3 8 8 O 1.42095 * 104.27964 * 140.46589 * 7 6 5 9 9 O 1.42094 * 104.27951 * 12.60510 * 7 6 5 10 10 C 1.81408 * 104.44426 * 256.53612 * 7 6 5 11 11 C 1.52999 * 109.46699 * 179.97438 * 10 7 6 12 12 C 1.50705 * 109.46894 * 180.02562 * 11 10 7 13 13 H 1.07996 * 119.99618 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99974 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47155 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47213 * 120.00257 * 16 14 12 19 19 H 1.48507 * 109.46869 * 240.00099 * 16 14 12 20 20 C 1.47151 * 118.03368 * 50.78064 * 6 5 3 21 21 H 1.09002 * 109.67906 * 68.94178 * 20 6 5 22 22 C 1.53007 * 109.68155 * 189.49495 * 20 6 5 23 23 C 1.53714 * 108.16397 * 309.16341 * 20 6 5 24 24 O 1.42953 * 109.14714 * 52.53803 * 23 20 6 25 25 H 1.08998 * 109.47400 * 300.00281 * 1 2 3 26 26 H 1.08996 * 109.47218 * 60.00416 * 1 2 3 27 27 H 1.09007 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47400 * 239.99719 * 2 1 3 29 29 H 1.09006 * 109.47078 * 119.99588 * 2 1 3 30 30 H 1.09004 * 109.68006 * 68.04399 * 5 3 2 31 31 H 1.09000 * 109.71091 * 307.51686 * 5 3 2 32 32 H 1.08995 * 109.47082 * 59.99998 * 10 7 6 33 33 H 1.09000 * 109.47330 * 299.99744 * 10 7 6 34 34 H 1.09000 * 109.47066 * 299.99962 * 11 10 7 35 35 H 1.08995 * 109.47310 * 60.00193 * 11 10 7 36 36 H 0.96998 * 120.00118 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46908 * 67.61429 * 22 20 6 38 38 H 1.09003 * 109.46856 * 187.61066 * 22 20 6 39 39 H 1.08997 * 109.47290 * 307.61357 * 22 20 6 40 40 H 1.09002 * 109.65958 * 292.57029 * 23 20 6 41 41 H 1.09005 * 109.44108 * 172.37187 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9826 -0.8406 5 6 3.5677 1.4455 -0.1259 6 7 4.0465 2.8238 0.0644 7 16 5.0851 3.5228 -1.0195 8 8 4.6253 4.8626 -1.1316 9 8 5.0670 2.6461 -2.1377 10 6 6.7008 3.4710 -0.1961 11 6 7.7584 4.0952 -1.1087 12 6 9.1007 4.0516 -0.4249 13 1 9.1903 3.6221 0.5619 14 6 10.2143 4.5601 -1.0592 15 7 10.1052 5.0827 -2.2611 16 14 11.8782 4.5054 -0.2119 17 1 11.7333 3.8716 1.1231 18 1 12.8273 3.7143 -1.0357 19 1 12.3966 5.8875 -0.0496 20 6 3.5796 3.5607 1.2495 21 1 4.0133 3.1226 2.1485 22 6 3.9943 5.0294 1.1395 23 6 2.0471 3.4565 1.3055 24 8 1.6673 2.0808 1.2237 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8552 1.0903 -1.1155 31 1 4.0007 0.7979 0.6365 32 1 6.9683 2.4355 0.0142 33 1 6.6506 4.0303 0.7381 34 1 7.8084 3.5356 -2.0427 35 1 7.4910 5.1306 -1.3194 36 1 10.8887 5.4401 -2.7075 37 1 3.4460 5.5016 0.3243 38 1 3.7677 5.5418 2.0745 39 1 5.0643 5.0910 0.9414 40 1 1.6115 4.0048 0.4702 41 1 1.6889 3.8779 2.2449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593642701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:42 Heat of formation + Delta-G solvation = -122.382286 kcal Electronic energy + Delta-G solvation = -22683.684637 eV Core-core repulsion = 19304.832639 eV Total energy + Delta-G solvation = -3378.851998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67673 -36.99919 -35.67386 -35.24575 -34.17036 -33.92951 -31.54024 -31.13941 -27.66518 -26.45140 -25.51100 -23.49643 -22.18801 -21.41582 -20.95874 -18.49762 -17.20541 -16.98600 -16.49840 -16.27485 -15.69133 -15.21715 -14.94385 -14.74329 -14.53844 -14.31739 -13.81200 -13.52775 -13.45233 -12.84179 -12.55271 -12.41600 -12.11622 -11.99261 -11.78736 -11.72367 -11.49523 -11.34827 -11.23395 -11.17928 -11.10476 -10.96621 -10.79738 -10.47280 -10.39319 -10.35225 -10.00419 -9.76712 -9.27913 -8.65857 -8.53218 -6.15059 -4.20743 0.70057 2.90903 3.23557 3.30918 3.34418 3.59191 4.21568 4.35016 4.44408 4.55237 4.64284 4.75005 4.90916 4.93551 5.06317 5.15173 5.20144 5.29092 5.37412 5.43941 5.50877 5.54417 5.57674 5.67623 5.72529 5.76113 5.77040 5.92547 5.99011 6.08122 6.13405 6.41290 6.53430 6.60121 7.05212 7.26639 7.32180 7.78188 8.14626 8.82907 9.44283 10.95983 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.003993 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.450047 B = 7010.990932 C = 7200.648569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.080 3.920 4 H 0.063 0.937 5 C 0.087 3.913 6 N -1.007 6.007 7 S 2.589 3.411 8 O -0.959 6.959 9 O -0.967 6.967 10 C -0.590 4.590 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.119 3.881 21 H 0.081 0.919 22 C -0.183 4.183 23 C 0.057 3.943 24 O -0.375 6.375 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.217 -6.893 7.670 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.081 0.919 5 C -0.039 4.039 6 N -0.844 5.844 7 S 2.689 3.311 8 O -0.950 6.950 9 O -0.958 6.958 10 C -0.723 4.723 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.013 3.987 21 H 0.099 0.901 22 C -0.241 4.241 23 C -0.021 4.021 24 O -0.294 6.294 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.495 -6.573 6.803 19.889 hybrid contribution 1.598 -0.013 0.790 1.783 sum -15.897 -6.586 7.593 18.808 Atomic orbital electron populations 1.21701 0.95100 1.01493 1.02288 1.21529 0.96852 0.93884 1.03145 1.22490 0.93472 0.94477 0.87500 0.91885 1.22146 0.94888 0.82797 1.04046 1.58166 1.62808 1.23383 1.40059 1.05774 0.76946 0.73989 0.74345 1.93589 1.79095 1.36429 1.85859 1.93498 1.87042 1.66638 1.48579 1.30540 1.18530 1.10223 1.13001 1.18968 0.92244 0.96210 0.93632 1.21037 0.91628 1.40432 1.02847 0.91994 1.25073 0.99513 0.94956 0.94958 1.69963 1.30304 1.39390 1.13168 0.86410 0.83418 0.77882 0.79567 1.19629 1.20758 1.20766 1.21743 0.95775 0.92837 0.88351 0.90090 1.22624 1.03694 0.93622 1.04180 1.23052 0.93282 0.83030 1.02723 1.87899 1.79644 1.23892 1.37972 0.91982 0.92900 0.92724 0.90147 0.90813 0.87504 0.90795 0.86252 0.86208 0.94908 0.94834 0.92558 0.88258 0.91001 0.91419 0.92398 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.85 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.08 0.90 2.78 -26.58 -0.07 0.83 16 4 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 5 C 0.09 1.08 5.99 -3.54 -0.02 1.06 16 6 N -1.01 -14.28 3.25 -105.80 -0.34 -14.62 16 7 S 2.59 46.98 4.86 -107.50 -0.52 46.46 16 8 O -0.96 -19.01 13.67 -57.54 -0.79 -19.80 16 9 O -0.97 -20.02 16.33 -57.54 -0.94 -20.96 16 10 C -0.59 -11.42 5.86 37.16 0.22 -11.20 16 11 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 12 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.12 1.44 3.72 -67.20 -0.25 1.19 16 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 22 C -0.18 -2.34 7.63 37.16 0.28 -2.06 16 23 C 0.06 0.62 6.31 37.53 0.24 0.86 16 24 O -0.38 -4.40 9.93 -35.23 -0.35 -4.75 16 25 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 1.38 6.64 -51.93 -0.34 1.04 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 33 H 0.12 2.08 6.70 -51.92 -0.35 1.74 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 1.42 6.49 -51.93 -0.34 1.08 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.97 4.88 -51.93 -0.25 0.72 16 40 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -33.31 333.88 -8.86 -42.18 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.73 Total: -0.06 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 0.06 Total: -23.93 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.39 Total: -40.29 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -2.08 Total: -45.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 46.98 SS G_CDS: -0.52 Total: 46.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.31 -8.86 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.205 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds