Wall clock time and date at job start Tue Mar 31 2020 07:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.09000 * 109.50851 * 305.10184 * 3 2 1 5 5 C 1.53289 * 109.51819 * 184.99854 * 3 2 1 6 6 N 1.47147 * 108.39072 * 187.77380 * 5 3 2 7 7 S 1.65601 * 120.98348 * 230.51834 * 6 5 3 8 8 O 1.42095 * 104.27964 * 140.46589 * 7 6 5 9 9 O 1.42094 * 104.27951 * 12.60510 * 7 6 5 10 10 C 1.81408 * 104.44426 * 256.53612 * 7 6 5 11 11 C 1.52999 * 109.46699 * 179.97438 * 10 7 6 12 12 C 1.50705 * 109.46894 * 180.02562 * 11 10 7 13 13 H 1.07996 * 119.99618 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99974 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47155 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47213 * 120.00257 * 16 14 12 19 19 H 1.48507 * 109.46869 * 240.00099 * 16 14 12 20 20 C 1.47151 * 118.03368 * 50.78064 * 6 5 3 21 21 H 1.09002 * 109.67906 * 68.94178 * 20 6 5 22 22 C 1.53007 * 109.68155 * 189.49495 * 20 6 5 23 23 C 1.53714 * 108.16397 * 309.16341 * 20 6 5 24 24 O 1.42953 * 109.14714 * 52.53803 * 23 20 6 25 25 H 1.08998 * 109.47400 * 300.00281 * 1 2 3 26 26 H 1.08996 * 109.47218 * 60.00416 * 1 2 3 27 27 H 1.09007 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47400 * 239.99719 * 2 1 3 29 29 H 1.09006 * 109.47078 * 119.99588 * 2 1 3 30 30 H 1.09004 * 109.68006 * 68.04399 * 5 3 2 31 31 H 1.09000 * 109.71091 * 307.51686 * 5 3 2 32 32 H 1.08995 * 109.47082 * 59.99998 * 10 7 6 33 33 H 1.09000 * 109.47330 * 299.99744 * 10 7 6 34 34 H 1.09000 * 109.47066 * 299.99962 * 11 10 7 35 35 H 1.08995 * 109.47310 * 60.00193 * 11 10 7 36 36 H 0.96998 * 120.00118 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46908 * 67.61429 * 22 20 6 38 38 H 1.09003 * 109.46856 * 187.61066 * 22 20 6 39 39 H 1.08997 * 109.47290 * 307.61357 * 22 20 6 40 40 H 1.09002 * 109.65958 * 292.57029 * 23 20 6 41 41 H 1.09005 * 109.44108 * 172.37187 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9826 -0.8406 5 6 3.5677 1.4455 -0.1259 6 7 4.0465 2.8238 0.0644 7 16 5.0851 3.5228 -1.0195 8 8 4.6253 4.8626 -1.1316 9 8 5.0670 2.6461 -2.1377 10 6 6.7008 3.4710 -0.1961 11 6 7.7584 4.0952 -1.1087 12 6 9.1007 4.0516 -0.4249 13 1 9.1903 3.6221 0.5619 14 6 10.2143 4.5601 -1.0592 15 7 10.1052 5.0827 -2.2611 16 14 11.8782 4.5054 -0.2119 17 1 11.7333 3.8716 1.1231 18 1 12.8273 3.7143 -1.0357 19 1 12.3966 5.8875 -0.0496 20 6 3.5796 3.5607 1.2495 21 1 4.0133 3.1226 2.1485 22 6 3.9943 5.0294 1.1395 23 6 2.0471 3.4565 1.3055 24 8 1.6673 2.0808 1.2237 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8552 1.0903 -1.1155 31 1 4.0007 0.7979 0.6365 32 1 6.9683 2.4355 0.0142 33 1 6.6506 4.0303 0.7381 34 1 7.8084 3.5356 -2.0427 35 1 7.4910 5.1306 -1.3194 36 1 10.8887 5.4401 -2.7075 37 1 3.4460 5.5016 0.3243 38 1 3.7677 5.5418 2.0745 39 1 5.0643 5.0910 0.9414 40 1 1.6115 4.0048 0.4702 41 1 1.6889 3.8779 2.2449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593642701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:41 Heat of formation + Delta-G solvation = -146.004356 kcal Electronic energy + Delta-G solvation = -22684.708966 eV Core-core repulsion = 19304.832639 eV Total energy + Delta-G solvation = -3379.876328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60739 -38.48804 -37.12107 -36.38376 -35.94090 -35.00144 -33.20361 -32.36094 -28.60144 -27.79426 -27.10482 -24.37649 -23.68670 -22.77457 -21.86351 -19.91080 -18.90179 -18.06048 -17.96575 -17.35858 -17.18097 -16.58362 -16.44272 -15.98981 -15.67048 -15.37758 -15.15081 -14.63103 -14.46203 -14.31817 -13.94750 -13.75983 -13.55084 -13.22744 -13.14505 -12.96815 -12.91824 -12.78968 -12.68465 -12.31835 -12.21556 -12.12996 -12.03903 -11.89863 -11.85109 -11.73510 -11.34081 -11.13292 -11.02891 -10.67991 -9.75374 -8.28550 -6.42995 -0.77258 1.39665 1.40224 1.53668 1.62293 2.36174 2.74756 2.78657 3.04761 3.14385 3.48674 3.65702 3.82899 3.97063 4.04185 4.06741 4.11164 4.20345 4.33769 4.47942 4.58415 4.62294 4.65938 4.67481 4.76660 4.80222 4.92183 4.98108 5.11861 5.15451 5.22030 5.23135 5.26754 5.46517 5.47785 5.55543 5.65779 6.03132 6.18346 6.70542 7.27477 8.83899 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.003993 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.450047 B = 7010.990932 C = 7200.648569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.052 0.948 5 C 0.079 3.921 6 N -1.000 6.000 7 S 2.610 3.390 8 O -0.980 6.980 9 O -0.997 6.997 10 C -0.589 4.589 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.075 0.925 14 C -0.004 4.004 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.256 1.256 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.115 3.885 21 H 0.105 0.895 22 C -0.186 4.186 23 C 0.057 3.943 24 O -0.378 6.378 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.004 0.996 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 -8.030 10.203 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.070 0.930 5 C -0.046 4.046 6 N -0.840 5.840 7 S 2.709 3.291 8 O -0.970 6.970 9 O -0.987 6.987 10 C -0.721 4.721 11 C -0.016 4.016 12 C -0.578 4.578 13 H 0.093 0.907 14 C -0.202 4.202 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.179 1.179 18 H -0.203 1.203 19 H -0.202 1.202 20 C 0.010 3.990 21 H 0.122 0.878 22 C -0.245 4.245 23 C -0.022 4.022 24 O -0.296 6.296 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.022 0.978 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.989 -7.713 9.342 21.688 hybrid contribution 1.650 0.343 0.014 1.685 sum -16.339 -7.370 9.356 20.220 Atomic orbital electron populations 1.21682 0.94563 1.02311 1.01812 1.21566 0.97275 0.92301 1.04051 1.22556 0.92395 0.95852 0.87195 0.92950 1.22416 0.95972 0.81805 1.04418 1.57860 1.61401 1.24405 1.40304 1.04892 0.76633 0.73337 0.74199 1.93575 1.79199 1.37855 1.86409 1.93451 1.87422 1.67330 1.50534 1.30452 1.18003 1.10960 1.12662 1.18805 0.94090 0.94863 0.93849 1.21527 0.92657 1.40172 1.03462 0.90723 1.26127 1.04082 0.94406 0.95594 1.70106 1.31690 1.40538 1.14988 0.85251 0.77882 0.78119 0.78925 1.17947 1.20302 1.20236 1.22042 0.96922 0.92164 0.87894 0.87759 1.22620 1.02056 0.94527 1.05247 1.23184 0.92080 0.82789 1.04105 1.87909 1.79557 1.24228 1.37941 0.92681 0.93153 0.91277 0.89136 0.90024 0.88371 0.88623 0.84529 0.84105 0.97772 0.97393 0.92330 0.90230 0.87605 0.93360 0.93195 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.81 71.98 0.71 -1.40 16 2 C -0.11 -1.77 5.64 30.59 0.17 -1.60 16 3 C 0.08 1.65 2.78 30.69 0.09 1.74 16 4 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 5 C 0.08 1.83 5.99 86.35 0.52 2.35 16 6 N -1.00 -27.10 3.25 -488.65 -1.59 -28.69 16 7 S 2.61 95.86 4.86 -56.49 -0.27 95.58 16 8 O -0.98 -39.85 13.67 -127.65 -1.74 -41.59 16 9 O -1.00 -42.32 16.33 -127.65 -2.08 -44.40 16 10 C -0.59 -22.83 5.86 71.98 0.42 -22.41 16 11 C 0.02 1.21 4.98 29.85 0.15 1.35 16 12 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 13 H 0.07 3.86 7.74 -2.91 -0.02 3.83 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 15 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 16 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 C 0.12 2.51 3.72 45.11 0.17 2.68 16 21 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 22 C -0.19 -4.49 7.63 71.98 0.55 -3.94 16 23 C 0.06 1.08 6.31 72.22 0.46 1.53 16 24 O -0.38 -7.89 9.93 -148.98 -1.48 -9.37 16 25 H 0.05 0.87 7.83 -2.39 -0.02 0.85 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.10 2.47 6.64 -2.38 -0.02 2.46 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 33 H 0.14 4.79 6.70 -2.39 -0.02 4.77 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.08 2.25 6.49 -2.39 -0.02 2.23 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.35 4.88 -2.39 -0.01 1.34 16 40 H 0.05 1.04 8.11 -2.39 -0.02 1.02 16 41 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -73.24 333.88 0.06 -73.18 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.00 Total: 15.88 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 3.92 Total: -49.27 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -1.30 Total: -85.29 kcal Atomic # 8 Polarization: -90.05 SS G_CDS: -5.31 Total: -95.36 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 95.86 SS G_CDS: -0.27 Total: 95.58 kcal Total: -73.24 0.06 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.823 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds