Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37671 * 120.04143 * 2 1 4 4 C 1.39129 * 120.08170 * 179.97438 * 3 2 1 5 5 N 1.39403 * 119.92139 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99738 * 215.59057 * 5 4 3 7 7 O 1.21272 * 120.00350 * 355.47641 * 6 5 4 8 8 C 1.50703 * 119.99656 * 175.47050 * 6 5 4 9 9 C 1.53003 * 109.46974 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46880 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46894 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99755 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00039 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00055 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47029 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47595 * 119.99517 * 15 13 11 18 18 H 1.48502 * 109.47095 * 239.99958 * 15 13 11 19 19 C 1.39175 * 120.15515 * 359.72887 * 4 3 2 20 20 C 1.37623 * 120.07679 * 0.55541 * 19 4 3 21 21 C 1.39791 * 120.04207 * 179.97438 * 2 1 3 22 22 C 1.47464 * 120.07471 * 0.03958 * 21 2 1 23 23 O 1.21513 * 119.99898 * 353.49469 * 22 21 2 24 24 O 1.34749 * 119.99813 * 173.49991 * 22 21 2 25 25 H 1.09001 * 109.47458 * 263.09833 * 1 2 3 26 26 H 1.09004 * 109.47121 * 23.09235 * 1 2 3 27 27 H 1.09005 * 109.47457 * 143.09279 * 1 2 3 28 28 H 1.07998 * 119.95902 * 359.96094 * 3 2 1 29 29 H 0.97000 * 120.00015 * 35.60051 * 5 4 3 30 30 H 1.08996 * 109.47325 * 300.00415 * 8 6 5 31 31 H 1.08997 * 109.46868 * 60.00474 * 8 6 5 32 32 H 1.08996 * 109.47166 * 300.00184 * 9 8 6 33 33 H 1.08997 * 109.47204 * 60.00352 * 9 8 6 34 34 H 1.09005 * 109.46921 * 299.99590 * 10 9 8 35 35 H 1.08997 * 109.47311 * 59.99931 * 10 9 8 36 36 H 0.96994 * 120.00291 * 180.02562 * 14 13 11 37 37 H 1.07996 * 119.96399 * 180.29983 * 19 4 3 38 38 H 1.08007 * 120.03925 * 179.72130 * 20 19 4 39 39 H 0.96696 * 116.99815 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.1918 0.0000 4 6 3.5874 1.1927 0.0005 5 7 4.2819 2.4015 0.0000 6 6 5.4410 2.5124 -0.6790 7 8 5.9217 1.5399 -1.2211 8 6 6.1395 3.8450 -0.7646 9 6 7.4218 3.6968 -1.5859 10 6 8.1313 5.0496 -1.6722 11 6 9.3941 4.9038 -2.4817 12 1 9.6638 3.9423 -2.8930 13 6 10.2056 5.9976 -2.6963 14 7 9.8773 7.1684 -2.1950 15 14 11.7712 5.8167 -3.6990 16 1 11.9124 4.4078 -4.1465 17 1 11.7058 6.7088 -4.8844 18 1 12.9404 6.1895 -2.8628 19 6 4.2874 -0.0101 0.0068 20 6 3.6050 -1.2053 0.0009 21 6 2.2068 -1.2101 0.0005 22 6 1.4721 -2.4887 0.0002 23 8 0.2627 -2.4945 0.1187 24 8 2.1418 -3.6505 -0.1314 25 1 -0.3634 -0.1235 1.0202 26 1 -0.3633 0.9454 -0.4031 27 1 -0.3634 -0.8218 -0.6172 28 1 1.6562 2.1271 -0.0006 29 1 3.9312 3.1626 0.4884 30 1 5.4822 4.5695 -1.2453 31 1 6.3882 4.1899 0.2390 32 1 8.0792 2.9722 -1.1055 33 1 7.1728 3.3520 -2.5894 34 1 7.4740 5.7746 -2.1525 35 1 8.3804 5.3940 -0.6685 36 1 10.4480 7.9380 -2.3463 37 1 5.3674 -0.0058 0.0121 38 1 4.1489 -2.1384 0.0012 39 1 1.6171 -4.4627 -0.1255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594456637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = -118.627629 kcal Electronic energy + Delta-G solvation = -21741.452532 eV Core-core repulsion = 18227.319397 eV Total energy + Delta-G solvation = -3514.133135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03244 -40.25395 -38.52893 -36.44956 -35.11101 -34.30003 -32.74875 -32.13045 -30.56326 -27.94664 -27.51241 -24.75115 -23.48688 -22.65367 -21.72367 -20.26934 -19.90362 -18.39720 -17.74113 -17.45376 -16.79623 -16.17622 -16.06047 -15.76195 -15.03916 -14.70663 -14.47245 -14.09773 -13.94093 -13.70187 -13.46577 -13.28751 -12.87448 -12.54799 -12.36904 -12.33231 -11.88388 -11.77314 -11.51031 -11.47583 -10.87031 -10.70832 -10.56362 -10.53870 -10.47741 -9.83504 -9.75686 -9.37653 -9.09899 -9.04429 -8.44925 -8.36564 -6.01976 -4.03585 0.39699 1.10804 2.18828 2.66059 2.76124 2.93319 3.31126 3.38708 3.44135 3.51120 4.45689 4.47528 4.52488 4.77164 4.85195 4.93898 5.14875 5.23769 5.34402 5.45569 5.48851 5.54045 5.55586 5.60945 5.81234 5.95096 6.02731 6.11911 6.15266 6.22788 6.31049 6.61643 6.69879 6.82078 7.07009 7.21692 7.63167 7.64976 7.76494 7.98026 8.08921 8.41456 9.03634 9.60842 11.09523 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038136 B = 0.002375 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.033481 B =11786.772154 C =12339.500236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.004 3.996 3 C -0.169 4.169 4 C 0.201 3.799 5 N -0.683 5.683 6 C 0.513 3.487 7 O -0.510 6.510 8 C -0.137 4.137 9 C -0.096 4.096 10 C 0.020 3.980 11 C -0.518 4.518 12 H 0.057 0.943 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.147 4.147 20 C -0.034 4.034 21 C -0.163 4.163 22 C 0.529 3.471 23 O -0.516 6.516 24 O -0.513 6.513 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.136 0.864 29 H 0.414 0.586 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 -14.947 7.922 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 C -0.189 4.189 4 C 0.104 3.896 5 N -0.328 5.328 6 C 0.303 3.697 7 O -0.384 6.384 8 C -0.177 4.177 9 C -0.134 4.134 10 C -0.017 4.017 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.167 4.167 20 C -0.053 4.053 21 C -0.165 4.165 22 C 0.376 3.624 23 O -0.407 6.407 24 O -0.325 6.325 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.154 0.846 29 H 0.251 0.749 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -18.764 -15.035 7.527 25.195 hybrid contribution 0.374 -0.053 -0.273 0.466 sum -18.390 -15.087 7.254 24.868 Atomic orbital electron populations 1.21112 0.89725 1.03301 1.03676 1.19728 0.96594 0.90645 0.92748 1.20747 0.92001 0.98276 1.07917 1.18107 0.90853 0.86517 0.94106 1.43846 1.24346 1.12585 1.52028 1.21627 0.79216 0.92582 0.76281 1.90693 1.63725 1.39725 1.44221 1.21907 0.99675 0.92167 1.03938 1.21485 0.92466 1.01232 0.98247 1.19137 0.94928 0.90463 0.97175 1.21290 1.06583 0.95244 1.32541 0.92499 1.25022 0.98153 0.95348 0.96010 1.69966 1.38255 0.99894 1.45570 0.86533 0.83295 0.78223 0.79966 1.19673 1.21017 1.21021 1.21337 1.01953 0.90373 1.03038 1.21331 0.92320 0.98757 0.92929 1.18806 0.93555 0.89747 1.14433 1.20839 0.85305 0.84221 0.72061 1.90844 1.15319 1.87687 1.46829 1.84590 1.45463 1.17175 1.85280 0.90382 0.91876 0.88964 0.84629 0.74922 0.88766 0.88763 0.92515 0.92525 0.96537 0.96522 0.93076 0.83346 0.84189 0.72943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.71 36.00 0.31 -0.76 16 2 C 0.00 0.04 5.91 -104.25 -0.62 -0.58 16 3 C -0.17 -1.63 9.57 -39.46 -0.38 -2.01 16 4 C 0.20 2.28 6.28 -83.74 -0.53 1.76 16 5 N -0.68 -7.29 5.31 -9.86 -0.05 -7.35 16 6 C 0.51 7.36 7.66 -10.98 -0.08 7.27 16 7 O -0.51 -9.15 13.44 5.56 0.07 -9.07 16 8 C -0.14 -2.02 5.70 -27.88 -0.16 -2.18 16 9 C -0.10 -1.95 4.44 -26.73 -0.12 -2.07 16 10 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.15 -1.80 8.66 -39.46 -0.34 -2.14 16 20 C -0.03 -0.37 9.60 -39.21 -0.38 -0.75 16 21 C -0.16 -1.77 5.88 -104.96 -0.62 -2.39 16 22 C 0.53 5.44 8.19 34.49 0.28 5.72 16 23 O -0.52 -6.10 14.13 -19.28 -0.27 -6.37 16 24 O -0.51 -3.91 12.69 -40.62 -0.52 -4.43 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 27 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 28 H 0.14 0.98 8.05 -52.49 -0.42 0.56 16 29 H 0.41 2.97 8.82 -40.82 -0.36 2.61 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.15 2.03 6.27 -52.49 -0.33 1.70 16 38 H 0.14 1.30 7.62 -52.48 -0.40 0.90 16 39 H 0.41 1.23 9.11 45.56 0.42 1.64 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -34.51 336.61 -7.46 -41.97 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.32 Total: 0.63 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.17 Total: -11.25 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.68 Total: -33.24 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.71 Total: -19.87 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.51 -7.46 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594456637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.653 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds