Wall clock time and date at job start Tue Mar 31 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37671 * 120.04143 * 2 1 4 4 C 1.39129 * 120.08170 * 179.97438 * 3 2 1 5 5 N 1.39403 * 119.92139 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99738 * 215.59057 * 5 4 3 7 7 O 1.21272 * 120.00350 * 355.47641 * 6 5 4 8 8 C 1.50703 * 119.99656 * 175.47050 * 6 5 4 9 9 C 1.53003 * 109.46974 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46880 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46894 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99755 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00039 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00055 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47029 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47595 * 119.99517 * 15 13 11 18 18 H 1.48502 * 109.47095 * 239.99958 * 15 13 11 19 19 C 1.39175 * 120.15515 * 359.72887 * 4 3 2 20 20 C 1.37623 * 120.07679 * 0.55541 * 19 4 3 21 21 C 1.39791 * 120.04207 * 179.97438 * 2 1 3 22 22 C 1.47464 * 120.07471 * 0.03958 * 21 2 1 23 23 O 1.21513 * 119.99898 * 353.49469 * 22 21 2 24 24 O 1.34749 * 119.99813 * 173.49991 * 22 21 2 25 25 H 1.09001 * 109.47458 * 263.09833 * 1 2 3 26 26 H 1.09004 * 109.47121 * 23.09235 * 1 2 3 27 27 H 1.09005 * 109.47457 * 143.09279 * 1 2 3 28 28 H 1.07998 * 119.95902 * 359.96094 * 3 2 1 29 29 H 0.97000 * 120.00015 * 35.60051 * 5 4 3 30 30 H 1.08996 * 109.47325 * 300.00415 * 8 6 5 31 31 H 1.08997 * 109.46868 * 60.00474 * 8 6 5 32 32 H 1.08996 * 109.47166 * 300.00184 * 9 8 6 33 33 H 1.08997 * 109.47204 * 60.00352 * 9 8 6 34 34 H 1.09005 * 109.46921 * 299.99590 * 10 9 8 35 35 H 1.08997 * 109.47311 * 59.99931 * 10 9 8 36 36 H 0.96994 * 120.00291 * 180.02562 * 14 13 11 37 37 H 1.07996 * 119.96399 * 180.29983 * 19 4 3 38 38 H 1.08007 * 120.03925 * 179.72130 * 20 19 4 39 39 H 0.96696 * 116.99815 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.1918 0.0000 4 6 3.5874 1.1927 0.0005 5 7 4.2819 2.4015 0.0000 6 6 5.4410 2.5124 -0.6790 7 8 5.9217 1.5399 -1.2211 8 6 6.1395 3.8450 -0.7646 9 6 7.4218 3.6968 -1.5859 10 6 8.1313 5.0496 -1.6722 11 6 9.3941 4.9038 -2.4817 12 1 9.6638 3.9423 -2.8930 13 6 10.2056 5.9976 -2.6963 14 7 9.8773 7.1684 -2.1950 15 14 11.7712 5.8167 -3.6990 16 1 11.9124 4.4078 -4.1465 17 1 11.7058 6.7088 -4.8844 18 1 12.9404 6.1895 -2.8628 19 6 4.2874 -0.0101 0.0068 20 6 3.6050 -1.2053 0.0009 21 6 2.2068 -1.2101 0.0005 22 6 1.4721 -2.4887 0.0002 23 8 0.2627 -2.4945 0.1187 24 8 2.1418 -3.6505 -0.1314 25 1 -0.3634 -0.1235 1.0202 26 1 -0.3633 0.9454 -0.4031 27 1 -0.3634 -0.8218 -0.6172 28 1 1.6562 2.1271 -0.0006 29 1 3.9312 3.1626 0.4884 30 1 5.4822 4.5695 -1.2453 31 1 6.3882 4.1899 0.2390 32 1 8.0792 2.9722 -1.1055 33 1 7.1728 3.3520 -2.5894 34 1 7.4740 5.7746 -2.1525 35 1 8.3804 5.3940 -0.6685 36 1 10.4480 7.9380 -2.3463 37 1 5.3674 -0.0058 0.0121 38 1 4.1489 -2.1384 0.0012 39 1 1.6171 -4.4627 -0.1255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594456637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:12 Heat of formation + Delta-G solvation = -141.327023 kcal Electronic energy + Delta-G solvation = -21742.436852 eV Core-core repulsion = 18227.319397 eV Total energy + Delta-G solvation = -3515.117455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91363 -41.17199 -39.44460 -37.18356 -36.27960 -35.92654 -34.09401 -33.47306 -31.57629 -29.59347 -28.27165 -26.24393 -24.72302 -23.48468 -22.86062 -21.71346 -21.01171 -19.16986 -18.83704 -18.30677 -18.17870 -17.77561 -16.99781 -16.70778 -16.49266 -16.01160 -15.51814 -15.27017 -15.09305 -14.53897 -14.49663 -14.29140 -14.11166 -13.81117 -13.60780 -13.41732 -13.13926 -13.04310 -12.63636 -12.53247 -12.49083 -12.38951 -12.31924 -11.57018 -11.50099 -11.40962 -11.31143 -11.20878 -10.78221 -10.53801 -9.86854 -9.34051 -8.20082 -6.29359 -0.44476 0.29501 1.28729 1.39496 1.40472 1.53508 1.65660 1.94290 2.13646 2.42035 2.68365 3.13374 3.65818 3.74980 3.78975 4.05896 4.13864 4.20922 4.27229 4.38056 4.43050 4.73901 4.79727 4.82320 4.86546 4.97453 5.01835 5.10743 5.17415 5.20483 5.22237 5.34623 5.45489 5.55647 5.64838 5.77138 5.84509 5.88658 6.27548 6.34727 6.86754 6.99560 7.06440 7.39399 8.91476 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.038136 B = 0.002375 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.033481 B =11786.772154 C =12339.500236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.003 4.003 3 C -0.156 4.156 4 C 0.185 3.815 5 N -0.662 5.662 6 C 0.519 3.481 7 O -0.553 6.553 8 C -0.127 4.127 9 C -0.084 4.084 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.051 0.949 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.164 4.164 20 C -0.035 4.035 21 C -0.173 4.173 22 C 0.532 3.468 23 O -0.534 6.534 24 O -0.510 6.510 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.433 0.567 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.266 -15.008 8.159 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.004 4.004 3 C -0.176 4.176 4 C 0.089 3.911 5 N -0.309 5.309 6 C 0.309 3.691 7 O -0.430 6.430 8 C -0.167 4.167 9 C -0.122 4.122 10 C -0.012 4.012 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.784 3.216 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.185 4.185 20 C -0.054 4.054 21 C -0.175 4.175 22 C 0.379 3.621 23 O -0.427 6.427 24 O -0.324 6.324 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.184 0.816 29 H 0.273 0.727 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -19.903 -15.107 7.793 26.174 hybrid contribution 0.671 -0.103 -0.323 0.752 sum -19.231 -15.211 7.470 25.632 Atomic orbital electron populations 1.21088 0.88598 1.03901 1.03747 1.20015 0.97461 0.90630 0.92268 1.20984 0.91116 0.99366 1.06161 1.18223 0.91621 0.86152 0.95068 1.43494 1.23017 1.13232 1.51108 1.21384 0.79912 0.91623 0.76191 1.90693 1.65114 1.40810 1.46336 1.21714 0.97444 0.93182 1.04346 1.21184 0.94646 0.97925 0.98489 1.19029 0.94112 0.92532 0.95564 1.21726 1.08206 0.95187 1.33218 0.93096 1.25879 1.01527 0.95008 0.97085 1.70061 1.39633 1.00602 1.46616 0.85484 0.79198 0.78361 0.78536 1.19257 1.20179 1.20156 1.21291 1.01227 0.91585 1.04366 1.21392 0.92552 0.98750 0.92725 1.19033 0.93595 0.90640 1.14244 1.20745 0.84950 0.84700 0.71681 1.90842 1.15959 1.88073 1.47801 1.84548 1.45649 1.17551 1.84609 0.90014 0.89787 0.90312 0.81640 0.72659 0.86618 0.86493 0.93813 0.93995 0.97939 0.97859 0.92699 0.85315 0.83273 0.70582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.71 71.23 0.62 -1.20 16 2 C 0.00 -0.05 5.91 -19.62 -0.12 -0.17 16 3 C -0.16 -2.63 9.57 22.35 0.21 -2.41 16 4 C 0.19 3.95 6.28 38.38 0.24 4.19 16 5 N -0.66 -12.88 5.31 -303.49 -1.61 -14.49 16 6 C 0.52 14.40 7.66 87.66 0.67 15.07 16 7 O -0.55 -20.04 13.44 -3.01 -0.04 -20.08 16 8 C -0.13 -3.59 5.70 29.85 0.17 -3.42 16 9 C -0.08 -3.45 4.44 30.60 0.14 -3.31 16 10 C 0.02 1.25 4.97 29.85 0.15 1.40 16 11 C -0.55 -31.31 9.11 25.60 0.23 -31.07 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 13 C 0.00 0.17 5.46 84.65 0.46 0.63 16 14 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 15 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 C -0.16 -4.02 8.66 22.35 0.19 -3.83 16 20 C -0.04 -0.76 9.60 22.51 0.22 -0.54 16 21 C -0.17 -3.57 5.88 -20.09 -0.12 -3.69 16 22 C 0.53 10.34 8.19 70.25 0.58 10.92 16 23 O -0.53 -12.05 14.13 19.79 0.28 -11.77 16 24 O -0.51 -7.05 12.69 -56.60 -0.72 -7.77 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 0.93 8.03 -2.38 -0.02 0.91 16 27 H 0.08 1.48 5.88 -2.38 -0.01 1.47 16 28 H 0.17 1.73 8.05 -2.91 -0.02 1.71 16 29 H 0.43 4.92 8.82 -92.71 -0.82 4.10 16 30 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.12 2.79 8.14 -2.39 -0.02 2.78 16 32 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 33 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.13 3.67 6.27 -2.91 -0.02 3.65 16 38 H 0.15 2.75 7.62 -2.91 -0.02 2.72 16 39 H 0.43 1.85 9.11 -74.06 -0.67 1.18 16 Total: -1.00 -75.18 336.61 3.47 -71.71 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.40 Total: 8.37 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.65 Total: -17.43 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.33 Total: -69.60 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.48 Total: -39.62 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -75.18 3.47 -71.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594456637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.616 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds