Wall clock time and date at job start Tue Mar 31 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99974 * 2 1 4 4 C 1.50704 * 109.46820 * 269.99578 * 3 2 1 5 5 H 1.07996 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99678 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00207 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99666 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47155 * 60.00324 * 8 6 4 10 10 H 1.48502 * 109.46803 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47128 * 300.00308 * 8 6 4 12 12 C 1.34775 * 120.00055 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99976 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99845 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.70338 * 85.58546 * 14 12 2 16 16 C 1.53460 * 109.72918 * 206.18856 * 14 12 2 17 17 O 1.43170 * 108.24851 * 59.98498 * 16 14 12 18 18 C 1.36115 * 116.70139 * 46.22270 * 17 16 14 19 19 C 1.38708 * 119.39410 * 162.74805 * 18 17 16 20 20 C 1.38191 * 120.06095 * 179.86405 * 19 18 17 21 21 C 1.38252 * 120.12078 * 359.97438 * 20 19 18 22 22 C 1.38204 * 120.10856 * 0.05913 * 21 20 19 23 23 C 1.38701 * 120.06437 * 359.97438 * 22 21 20 24 24 O 1.36113 * 119.39436 * 179.66787 * 23 22 21 25 25 H 1.08995 * 109.46886 * 270.00365 * 1 2 3 26 26 H 1.09004 * 109.46685 * 30.00217 * 1 2 3 27 27 H 1.08996 * 109.46991 * 150.00102 * 1 2 3 28 28 H 1.08997 * 109.47153 * 29.99465 * 3 2 1 29 29 H 1.08997 * 109.47220 * 149.99756 * 3 2 1 30 30 H 0.97000 * 120.00386 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46805 * 299.41470 * 15 14 12 32 32 H 1.09000 * 109.47395 * 59.41151 * 15 14 12 33 33 H 1.09003 * 109.46960 * 179.41531 * 15 14 12 34 34 H 1.09006 * 109.70852 * 300.29212 * 16 14 12 35 35 H 1.09005 * 109.70733 * 179.67625 * 16 14 12 36 36 H 1.07997 * 119.96886 * 359.89231 * 19 18 17 37 37 H 1.08008 * 119.94297 * 180.02562 * 20 19 18 38 38 H 1.07991 * 119.94913 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.96432 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0976 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6733 8 14 3.4369 3.4174 -3.4341 9 1 2.1392 3.5946 -4.1338 10 1 4.1795 4.7034 -3.4341 11 1 4.2396 2.3828 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 1.0320 -2.8639 -1.4357 16 6 2.2487 -3.5689 0.6386 17 8 2.5490 -3.1778 1.9827 18 6 1.5119 -2.7095 2.7296 19 6 1.6371 -2.6552 4.1100 20 6 0.5939 -2.1796 4.8815 21 6 -0.5768 -1.7562 4.2802 22 6 -0.7082 -1.8083 2.9054 23 6 0.3347 -2.2852 2.1252 24 8 0.1880 -2.3369 0.7730 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0302 4.4440 -0.8505 31 1 0.4014 -2.0925 -1.8779 32 1 1.9464 -2.9649 -2.0203 33 1 0.4963 -3.8133 -1.4321 34 1 3.1738 -3.6838 0.0737 35 1 1.7011 -4.5115 0.6436 36 1 2.5508 -2.9846 4.5822 37 1 0.6935 -2.1378 5.9561 38 1 -1.3901 -1.3846 4.8857 39 1 -1.6236 -1.4765 2.4381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599151477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:04 Heat of formation + Delta-G solvation = -66.811309 kcal Electronic energy + Delta-G solvation = -24523.135964 eV Core-core repulsion = 21011.249753 eV Total energy + Delta-G solvation = -3511.886211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62978 -38.90636 -37.39013 -37.18010 -34.84023 -32.93466 -32.45717 -30.61248 -29.06729 -27.90775 -26.70311 -25.94934 -24.12799 -22.98603 -22.60389 -21.04496 -19.09442 -18.40463 -17.26049 -16.85461 -16.51393 -15.81955 -15.43007 -15.13403 -14.91177 -14.61365 -14.42449 -14.05464 -13.85053 -13.70462 -13.34720 -13.01402 -12.73454 -12.38460 -12.11936 -12.07985 -11.93325 -11.81922 -11.63481 -11.40001 -11.18214 -11.04322 -10.91091 -10.57013 -10.24554 -10.14504 -9.66611 -9.08688 -8.52065 -8.44667 -7.93062 -7.66202 -6.05190 -4.10672 1.34508 1.38379 2.86863 3.22935 3.30571 3.33748 3.35335 3.39522 3.73568 3.83129 4.24364 4.42100 4.62338 4.82709 4.85826 5.01941 5.15166 5.23722 5.28923 5.33339 5.43019 5.49360 5.56419 5.57688 5.80531 5.90223 6.00521 6.07169 6.17222 6.24488 6.36831 6.49233 6.66624 6.93026 7.05239 7.41421 7.46942 7.51807 7.89963 8.20830 8.33920 8.82791 8.98633 9.54021 11.02962 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.005206 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.595214 B = 5377.184931 C = 5761.450951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.584 5.584 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.525 6.525 14 C 0.058 3.942 15 C -0.135 4.135 16 C 0.052 3.948 17 O -0.295 6.295 18 C 0.057 3.943 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.112 4.112 23 C 0.052 3.948 24 O -0.291 6.291 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 -14.404 6.314 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.315 5.315 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.277 3.723 13 O -0.402 6.402 14 C 0.016 3.984 15 C -0.192 4.192 16 C -0.024 4.024 17 O -0.209 6.209 18 C 0.011 3.989 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.131 4.131 23 C 0.007 3.993 24 O -0.206 6.206 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.220 -14.194 6.295 18.059 hybrid contribution 0.171 0.472 -1.133 1.239 sum -9.049 -13.722 5.162 17.229 Atomic orbital electron populations 1.21859 0.80836 1.02246 1.00909 1.48068 1.06603 1.07331 1.69534 1.19329 0.92502 0.77872 0.97619 1.21354 1.36797 1.06399 0.92059 0.92503 1.24940 0.95303 0.96325 0.97490 1.69924 1.38172 1.14333 1.30834 0.86542 0.78358 0.77858 0.84562 1.20215 1.21118 1.20177 1.20216 0.88041 0.85024 0.78992 1.90702 1.13103 1.86538 1.49877 1.22913 0.85325 0.95907 0.94283 1.21767 1.03887 1.03030 0.90505 1.23465 1.02365 0.95009 0.81592 1.86365 1.31685 1.78762 1.24086 1.19036 0.88147 0.99776 0.91918 1.20428 1.00339 1.02983 0.89828 1.20867 0.93001 0.99992 0.99744 1.20862 0.98257 1.01255 0.93587 1.20416 0.98348 1.01171 0.93131 1.18930 0.95475 1.01606 0.83297 1.86445 1.31251 1.88810 1.14092 0.93623 0.91422 0.91201 0.94893 0.93926 0.92603 0.90075 0.89287 0.90500 0.85342 0.90271 0.85003 0.85321 0.85277 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 8.95 59.85 0.54 2.05 16 2 N -0.58 -13.15 2.86 -182.95 -0.52 -13.68 16 3 C 0.25 6.69 5.16 -5.19 -0.03 6.66 16 4 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.49 10.76 5.75 -10.98 -0.06 10.70 16 13 O -0.53 -13.58 15.63 5.37 0.08 -13.50 16 14 C 0.06 0.93 0.67 -91.53 -0.06 0.87 16 15 C -0.13 -1.71 8.69 37.16 0.32 -1.39 16 16 C 0.05 0.77 5.60 37.40 0.21 0.98 16 17 O -0.30 -5.18 9.97 -36.15 -0.36 -5.54 16 18 C 0.06 0.93 6.31 -39.14 -0.25 0.69 16 19 C -0.12 -1.65 9.96 -39.42 -0.39 -2.04 16 20 C -0.12 -1.38 10.04 -39.59 -0.40 -1.78 16 21 C -0.12 -1.39 10.04 -39.59 -0.40 -1.79 16 22 C -0.11 -1.47 9.06 -39.42 -0.36 -1.83 16 23 C 0.05 0.81 5.49 -39.14 -0.22 0.59 16 24 O -0.29 -4.49 6.57 -32.89 -0.22 -4.70 16 25 H 0.05 0.76 6.48 -51.93 -0.34 0.42 16 26 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.07 1.09 4.58 -51.93 -0.24 0.85 16 28 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.08 1.06 6.89 -51.93 -0.36 0.70 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.13 1.83 7.88 -51.93 -0.41 1.42 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -34.69 321.92 -7.03 -41.72 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.07 Total: 0.23 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.51 Total: -0.10 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.21 Total: -39.89 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.49 Total: -23.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.69 -7.03 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599151477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.093 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds