Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99974 * 2 1 4 4 C 1.50704 * 109.46820 * 269.99578 * 3 2 1 5 5 H 1.07996 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99678 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00207 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99666 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47155 * 60.00324 * 8 6 4 10 10 H 1.48502 * 109.46803 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47128 * 300.00308 * 8 6 4 12 12 C 1.34775 * 120.00055 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99976 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99845 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.70338 * 85.58546 * 14 12 2 16 16 C 1.53460 * 109.72918 * 206.18856 * 14 12 2 17 17 O 1.43170 * 108.24851 * 59.98498 * 16 14 12 18 18 C 1.36115 * 116.70139 * 46.22270 * 17 16 14 19 19 C 1.38708 * 119.39410 * 162.74805 * 18 17 16 20 20 C 1.38191 * 120.06095 * 179.86405 * 19 18 17 21 21 C 1.38252 * 120.12078 * 359.97438 * 20 19 18 22 22 C 1.38204 * 120.10856 * 0.05913 * 21 20 19 23 23 C 1.38701 * 120.06437 * 359.97438 * 22 21 20 24 24 O 1.36113 * 119.39436 * 179.66787 * 23 22 21 25 25 H 1.08995 * 109.46886 * 270.00365 * 1 2 3 26 26 H 1.09004 * 109.46685 * 30.00217 * 1 2 3 27 27 H 1.08996 * 109.46991 * 150.00102 * 1 2 3 28 28 H 1.08997 * 109.47153 * 29.99465 * 3 2 1 29 29 H 1.08997 * 109.47220 * 149.99756 * 3 2 1 30 30 H 0.97000 * 120.00386 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46805 * 299.41470 * 15 14 12 32 32 H 1.09000 * 109.47395 * 59.41151 * 15 14 12 33 33 H 1.09003 * 109.46960 * 179.41531 * 15 14 12 34 34 H 1.09006 * 109.70852 * 300.29212 * 16 14 12 35 35 H 1.09005 * 109.70733 * 179.67625 * 16 14 12 36 36 H 1.07997 * 119.96886 * 359.89231 * 19 18 17 37 37 H 1.08008 * 119.94297 * 180.02562 * 20 19 18 38 38 H 1.07991 * 119.94913 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.96432 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0976 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6733 8 14 3.4369 3.4174 -3.4341 9 1 2.1392 3.5946 -4.1338 10 1 4.1795 4.7034 -3.4341 11 1 4.2396 2.3828 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 1.0320 -2.8639 -1.4357 16 6 2.2487 -3.5689 0.6386 17 8 2.5490 -3.1778 1.9827 18 6 1.5119 -2.7095 2.7296 19 6 1.6371 -2.6552 4.1100 20 6 0.5939 -2.1796 4.8815 21 6 -0.5768 -1.7562 4.2802 22 6 -0.7082 -1.8083 2.9054 23 6 0.3347 -2.2852 2.1252 24 8 0.1880 -2.3369 0.7730 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0302 4.4440 -0.8505 31 1 0.4014 -2.0925 -1.8779 32 1 1.9464 -2.9649 -2.0203 33 1 0.4963 -3.8133 -1.4321 34 1 3.1738 -3.6838 0.0737 35 1 1.7011 -4.5115 0.6436 36 1 2.5508 -2.9846 4.5822 37 1 0.6935 -2.1378 5.9561 38 1 -1.3901 -1.3846 4.8857 39 1 -1.6236 -1.4765 2.4381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599151477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = -89.909457 kcal Electronic energy + Delta-G solvation = -24524.137574 eV Core-core repulsion = 21011.249753 eV Total energy + Delta-G solvation = -3512.887822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.85772 -40.40316 -38.54013 -38.45306 -36.68721 -34.75212 -33.97362 -31.63335 -30.17967 -29.87912 -27.87452 -27.49228 -25.86834 -24.40510 -23.66081 -22.56751 -20.30504 -19.74835 -18.74677 -18.63394 -17.95538 -17.45352 -16.82660 -16.54113 -16.39484 -16.02205 -15.81305 -15.39714 -15.10059 -14.90453 -14.77015 -14.40621 -14.15930 -13.83893 -13.53867 -13.51821 -13.32145 -13.14273 -12.99838 -12.82206 -12.76199 -12.59464 -12.46748 -12.24053 -12.08628 -11.78108 -11.36879 -10.71034 -10.68375 -9.64558 -9.50687 -9.04760 -8.26317 -6.42560 0.31454 0.34356 1.34647 1.39871 1.43672 1.48528 1.92606 2.03781 2.30042 2.39328 2.76193 3.02933 3.05270 3.32795 3.58723 3.71201 4.06378 4.13326 4.24357 4.34415 4.35033 4.46547 4.48880 4.57145 4.64041 4.64422 4.83860 4.86526 4.93143 5.06232 5.11610 5.21713 5.22974 5.47713 5.52266 5.69079 5.75367 5.87202 5.98390 6.35038 6.57400 6.66596 7.15242 7.31590 8.81436 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.005206 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.595214 B = 5377.184931 C = 5761.450951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.593 5.593 3 C 0.262 3.738 4 C -0.544 4.544 5 H 0.057 0.943 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.484 3.516 13 O -0.580 6.580 14 C 0.068 3.932 15 C -0.132 4.132 16 C 0.048 3.952 17 O -0.325 6.325 18 C 0.023 3.977 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.116 4.116 23 C 0.025 3.975 24 O -0.285 6.285 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.020 0.980 29 H -0.008 1.008 30 H 0.268 0.732 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.397 -15.275 5.920 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.323 5.323 3 C 0.141 3.859 4 C -0.583 4.583 5 H 0.076 0.924 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.796 3.204 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.271 3.729 13 O -0.460 6.460 14 C 0.026 3.974 15 C -0.189 4.189 16 C -0.027 4.027 17 O -0.240 6.240 18 C -0.022 4.022 19 C -0.154 4.154 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.019 4.019 24 O -0.200 6.200 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.038 0.962 29 H 0.010 0.990 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.184 0.816 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.685 -15.088 5.911 19.978 hybrid contribution 0.902 0.750 -0.835 1.440 sum -10.783 -14.338 5.076 18.644 Atomic orbital electron populations 1.22058 0.77883 1.03498 1.02154 1.48086 1.08398 1.06188 1.69663 1.18772 0.90650 0.79963 0.96536 1.21611 1.37315 1.06827 0.92510 0.92449 1.25934 0.94654 0.96234 1.02391 1.70059 1.38659 1.14800 1.33389 0.85391 0.78960 0.77401 0.78605 1.18217 1.20298 1.20062 1.21319 0.87860 0.86653 0.77093 1.90656 1.15754 1.87645 1.51959 1.22790 0.85487 0.92493 0.96631 1.21860 1.04342 1.04922 0.87757 1.23688 1.02599 0.95879 0.80583 1.86297 1.33112 1.79383 1.25196 1.19449 0.88506 1.01407 0.92833 1.20766 1.01558 1.03631 0.89495 1.21320 0.92213 0.98140 1.01290 1.21362 0.98995 0.99652 0.93313 1.20823 0.98379 1.00376 0.93886 1.19262 0.96163 1.03097 0.83422 1.86428 1.30236 1.89026 1.14267 0.92310 0.91658 0.88431 0.96167 0.98978 0.92279 0.90311 0.89341 0.86414 0.85706 0.86532 0.84578 0.82051 0.81594 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.00 8.95 127.77 1.14 4.15 16 2 N -0.59 -27.40 2.86 -851.11 -2.43 -29.84 16 3 C 0.26 14.97 5.16 85.63 0.44 15.42 16 4 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 5 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 6 C 0.01 0.41 5.46 84.66 0.46 0.87 16 7 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 8 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.48 21.74 5.75 87.66 0.50 22.24 16 13 O -0.58 -31.69 15.63 -2.84 -0.04 -31.74 16 14 C 0.07 2.15 0.67 -11.38 -0.01 2.15 16 15 C -0.13 -3.08 8.69 71.98 0.63 -2.45 16 16 C 0.05 1.41 5.60 72.14 0.40 1.81 16 17 O -0.33 -11.72 9.97 -79.51 -0.79 -12.51 16 18 C 0.02 0.75 6.31 22.56 0.14 0.90 16 19 C -0.14 -3.77 9.96 22.37 0.22 -3.55 16 20 C -0.11 -2.36 10.04 22.26 0.22 -2.14 16 21 C -0.12 -2.27 10.04 22.26 0.22 -2.05 16 22 C -0.12 -2.77 9.06 22.37 0.20 -2.56 16 23 C 0.03 0.75 5.49 22.56 0.12 0.88 16 24 O -0.28 -8.31 6.57 -82.62 -0.54 -8.85 16 25 H 0.06 1.89 6.48 -2.39 -0.02 1.87 16 26 H 0.06 2.29 8.07 -2.38 -0.02 2.27 16 27 H 0.10 2.85 4.58 -2.39 -0.01 2.84 16 28 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 29 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.08 1.88 6.89 -2.38 -0.02 1.86 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.13 3.64 7.88 -2.38 -0.02 3.62 16 35 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.17 2.03 8.06 -2.92 -0.02 2.00 16 39 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -79.89 321.92 4.51 -75.38 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.06 Total: 13.85 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 4.95 Total: 3.75 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.15 Total: -87.07 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -1.38 Total: -53.11 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.89 4.51 -75.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599151477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.533 kcal (2) G-P(sol) polarization free energy of solvation -79.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds