Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.73374 * 2 1 4 4 O 1.21284 * 119.99967 * 264.39431 * 3 2 1 5 5 N 1.34776 * 120.00593 * 84.39559 * 3 2 1 6 6 C 1.46501 * 120.00085 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46644 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.46940 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99809 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00214 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99880 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99786 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47022 * 90.00247 * 12 10 8 14 14 H 1.48503 * 109.46835 * 210.00227 * 12 10 8 15 15 H 1.48500 * 109.47093 * 329.99916 * 12 10 8 16 16 C 1.53466 * 109.71022 * 239.39473 * 2 1 3 17 17 O 1.43179 * 108.26921 * 180.55145 * 16 2 1 18 18 C 1.36198 * 116.63810 * 46.25773 * 17 16 2 19 19 C 1.38694 * 119.37533 * 162.87509 * 18 17 16 20 20 C 1.38195 * 120.06772 * 179.72190 * 19 18 17 21 21 C 1.38244 * 120.11039 * 359.97438 * 20 19 18 22 22 C 1.38193 * 120.11691 * 0.02562 * 21 20 19 23 23 C 1.38699 * 120.06473 * 0.06501 * 22 21 20 24 24 O 1.36110 * 119.39804 * 179.78724 * 23 22 21 25 25 H 1.08998 * 109.46321 * 180.60757 * 1 2 3 26 26 H 1.08999 * 109.47210 * 300.60533 * 1 2 3 27 27 H 1.08996 * 109.47165 * 60.60887 * 1 2 3 28 28 H 0.96997 * 119.99755 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.47148 * 299.99331 * 6 5 3 30 30 H 1.09000 * 109.47232 * 59.99956 * 6 5 3 31 31 H 1.08994 * 109.47489 * 299.99967 * 7 6 5 32 32 H 1.09000 * 109.47107 * 60.00168 * 7 6 5 33 33 H 0.96995 * 119.99416 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.71049 * 300.25914 * 16 2 1 35 35 H 1.08997 * 109.71070 * 60.84611 * 16 2 1 36 36 H 1.08007 * 119.96689 * 359.70257 * 19 18 17 37 37 H 1.07997 * 119.93994 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.94036 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.96889 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0389 1.4185 0.0000 4 8 2.3402 1.9547 -1.0453 5 7 2.1592 2.0914 1.1615 6 6 2.6533 3.4706 1.1614 7 6 2.6924 3.9984 2.5969 8 6 3.2013 5.4169 2.5969 9 1 3.4696 5.8943 1.6660 10 6 3.3245 6.1052 3.7852 11 7 3.7681 7.3433 3.7850 12 14 2.8612 5.2792 5.3953 13 1 4.0502 4.5904 5.9583 14 1 2.3812 6.3038 6.3570 15 1 1.7839 4.2869 5.1505 16 6 2.0476 -0.7355 -1.2435 17 8 3.4789 -0.7285 -1.2059 18 6 4.0602 -1.0577 -0.0189 19 6 5.3993 -1.4181 0.0060 20 6 6.0050 -1.7492 1.2031 21 6 5.2784 -1.7217 2.3789 22 6 3.9438 -1.3635 2.3612 23 6 3.3293 -1.0318 1.1628 24 8 2.0131 -0.6853 1.1604 25 1 -0.3632 -1.0276 0.0109 26 1 -0.3633 0.5232 0.8845 27 1 -0.3633 0.5043 -0.8954 28 1 1.9179 1.6628 1.9975 29 1 3.6568 3.4969 0.7368 30 1 1.9892 4.0944 0.5632 31 1 1.6888 3.9721 3.0212 32 1 3.3564 3.3746 3.1954 33 1 3.8551 7.8273 4.6211 34 1 1.6848 -1.7634 -1.2402 35 1 1.7010 -0.2263 -2.1427 36 1 5.9691 -1.4403 -0.9112 37 1 7.0477 -2.0300 1.2201 38 1 5.7547 -1.9806 3.3131 39 1 3.3786 -1.3424 3.2812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599750226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = -85.405047 kcal Electronic energy + Delta-G solvation = -23678.567405 eV Core-core repulsion = 20165.874909 eV Total energy + Delta-G solvation = -3512.692496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79925 -39.25253 -37.60646 -37.42006 -35.09531 -33.16793 -32.76514 -30.77522 -30.14999 -29.23478 -26.93201 -25.55037 -23.85658 -22.80611 -22.14623 -20.82169 -19.66217 -18.99833 -17.94992 -17.05909 -16.93244 -15.92092 -15.69204 -15.57762 -15.00278 -14.94928 -14.44010 -14.17408 -14.07145 -13.96028 -13.93604 -13.38472 -13.01519 -12.90868 -12.65110 -12.52866 -12.06792 -12.01711 -11.77751 -11.51641 -11.25895 -11.22127 -10.54460 -10.41884 -10.32473 -9.98048 -9.59719 -9.33431 -8.73408 -8.68181 -8.58814 -8.16330 -6.12234 -4.12479 1.18299 1.22006 2.47750 2.86539 3.04355 3.24704 3.32201 3.33551 3.36772 3.63334 3.94292 4.36870 4.42699 4.54783 4.63946 4.89037 4.94100 5.05424 5.17879 5.20681 5.23377 5.28956 5.30215 5.38745 5.68249 5.74763 6.02101 6.05571 6.07305 6.15628 6.36309 6.50812 6.51934 6.65093 6.75790 7.08804 7.20293 7.27231 7.64302 7.76994 8.35021 8.44314 8.91683 9.47809 11.00788 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016141 B = 0.004841 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.242781 B = 5781.991500 C = 6537.587031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 C 0.495 3.505 4 O -0.527 6.527 5 N -0.710 5.710 6 C 0.130 3.870 7 C -0.021 4.021 8 C -0.523 4.523 9 H 0.076 0.924 10 C 0.070 3.930 11 N -0.898 5.898 12 Si 0.881 3.119 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.051 3.949 17 O -0.295 6.295 18 C 0.055 3.945 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.108 4.108 23 C 0.045 3.955 24 O -0.294 6.294 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.400 0.600 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -22.504 -5.044 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 C 0.277 3.723 4 O -0.404 6.404 5 N -0.360 5.360 6 C 0.008 3.992 7 C -0.059 4.059 8 C -0.561 4.561 9 H 0.094 0.906 10 C -0.132 4.132 11 N -0.536 5.536 12 Si 0.708 3.292 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.191 1.191 16 C -0.025 4.025 17 O -0.209 6.209 18 C 0.010 3.990 19 C -0.135 4.135 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.127 4.127 23 C 0.001 3.999 24 O -0.209 6.209 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.234 0.766 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.120 -21.897 -5.710 22.843 hybrid contribution -0.415 -0.360 1.323 1.432 sum -3.535 -22.257 -4.388 22.959 Atomic orbital electron populations 1.21738 0.88299 1.04432 1.04782 1.22887 0.98205 0.90185 0.87119 1.20478 0.79258 0.87549 0.84975 1.90726 1.49136 1.69225 1.31328 1.46255 1.65030 1.16192 1.08485 1.21577 0.98854 0.78360 1.00438 1.19787 0.97252 0.97657 0.91168 1.20898 1.44196 0.95552 0.95471 0.90620 1.24987 0.94427 0.94693 0.99071 1.69904 1.46126 1.10293 1.27283 0.86765 0.79349 0.79478 0.83593 1.20163 1.21208 1.19077 1.23482 0.79348 1.00697 0.99004 1.86405 1.20518 1.84598 1.29353 1.19032 0.94070 1.01515 0.84360 1.20448 0.91911 1.01575 0.99545 1.20925 1.00080 1.00542 0.91610 1.20913 0.93119 1.00989 0.98658 1.20457 0.94812 1.01944 0.95471 1.18916 0.84214 1.03142 0.93668 1.86343 1.21949 1.72399 1.40211 0.90065 0.90088 0.89179 0.76586 0.91884 0.91706 0.95964 0.96402 0.92527 0.89946 0.85261 0.84833 0.85080 0.85026 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.87 37.16 0.33 -0.92 16 2 C 0.06 0.75 1.05 -91.53 -0.10 0.65 16 3 C 0.49 8.49 5.85 -10.98 -0.06 8.43 16 4 O -0.53 -10.77 16.00 4.72 0.08 -10.69 16 5 N -0.71 -12.59 5.47 -60.29 -0.33 -12.92 16 6 C 0.13 2.74 5.61 -4.04 -0.02 2.72 16 7 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 8 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 9 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 12 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 16 C 0.05 0.61 5.58 37.40 0.21 0.82 16 17 O -0.29 -4.44 9.95 -37.44 -0.37 -4.82 16 18 C 0.06 0.81 6.31 -39.14 -0.25 0.56 16 19 C -0.12 -1.47 9.96 -39.43 -0.39 -1.86 16 20 C -0.11 -1.22 10.04 -39.59 -0.40 -1.62 16 21 C -0.12 -1.28 10.04 -39.60 -0.40 -1.67 16 22 C -0.11 -1.33 9.96 -39.43 -0.39 -1.72 16 23 C 0.05 0.63 6.17 -39.14 -0.24 0.39 16 24 O -0.29 -3.93 9.18 -32.82 -0.30 -4.24 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.40 6.37 7.95 -40.82 -0.32 6.05 16 29 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 32 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.13 1.42 7.89 -51.93 -0.41 1.01 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -33.93 329.52 -7.43 -41.36 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.32 Total: 4.51 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.26 Total: -8.04 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.44 Total: -39.60 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.60 Total: -19.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.93 -7.43 -41.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599750226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.046 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds