Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.73374 * 2 1 4 4 O 1.21284 * 119.99967 * 264.39431 * 3 2 1 5 5 N 1.34776 * 120.00593 * 84.39559 * 3 2 1 6 6 C 1.46501 * 120.00085 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46644 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.46940 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99809 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00214 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99880 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99786 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47022 * 90.00247 * 12 10 8 14 14 H 1.48503 * 109.46835 * 210.00227 * 12 10 8 15 15 H 1.48500 * 109.47093 * 329.99916 * 12 10 8 16 16 C 1.53466 * 109.71022 * 239.39473 * 2 1 3 17 17 O 1.43179 * 108.26921 * 180.55145 * 16 2 1 18 18 C 1.36198 * 116.63810 * 46.25773 * 17 16 2 19 19 C 1.38694 * 119.37533 * 162.87509 * 18 17 16 20 20 C 1.38195 * 120.06772 * 179.72190 * 19 18 17 21 21 C 1.38244 * 120.11039 * 359.97438 * 20 19 18 22 22 C 1.38193 * 120.11691 * 0.02562 * 21 20 19 23 23 C 1.38699 * 120.06473 * 0.06501 * 22 21 20 24 24 O 1.36110 * 119.39804 * 179.78724 * 23 22 21 25 25 H 1.08998 * 109.46321 * 180.60757 * 1 2 3 26 26 H 1.08999 * 109.47210 * 300.60533 * 1 2 3 27 27 H 1.08996 * 109.47165 * 60.60887 * 1 2 3 28 28 H 0.96997 * 119.99755 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.47148 * 299.99331 * 6 5 3 30 30 H 1.09000 * 109.47232 * 59.99956 * 6 5 3 31 31 H 1.08994 * 109.47489 * 299.99967 * 7 6 5 32 32 H 1.09000 * 109.47107 * 60.00168 * 7 6 5 33 33 H 0.96995 * 119.99416 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.71049 * 300.25914 * 16 2 1 35 35 H 1.08997 * 109.71070 * 60.84611 * 16 2 1 36 36 H 1.08007 * 119.96689 * 359.70257 * 19 18 17 37 37 H 1.07997 * 119.93994 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.94036 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.96889 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0389 1.4185 0.0000 4 8 2.3402 1.9547 -1.0453 5 7 2.1592 2.0914 1.1615 6 6 2.6533 3.4706 1.1614 7 6 2.6924 3.9984 2.5969 8 6 3.2013 5.4169 2.5969 9 1 3.4696 5.8943 1.6660 10 6 3.3245 6.1052 3.7852 11 7 3.7681 7.3433 3.7850 12 14 2.8612 5.2792 5.3953 13 1 4.0502 4.5904 5.9583 14 1 2.3812 6.3038 6.3570 15 1 1.7839 4.2869 5.1505 16 6 2.0476 -0.7355 -1.2435 17 8 3.4789 -0.7285 -1.2059 18 6 4.0602 -1.0577 -0.0189 19 6 5.3993 -1.4181 0.0060 20 6 6.0050 -1.7492 1.2031 21 6 5.2784 -1.7217 2.3789 22 6 3.9438 -1.3635 2.3612 23 6 3.3293 -1.0318 1.1628 24 8 2.0131 -0.6853 1.1604 25 1 -0.3632 -1.0276 0.0109 26 1 -0.3633 0.5232 0.8845 27 1 -0.3633 0.5043 -0.8954 28 1 1.9179 1.6628 1.9975 29 1 3.6568 3.4969 0.7368 30 1 1.9892 4.0944 0.5632 31 1 1.6888 3.9721 3.0212 32 1 3.3564 3.3746 3.1954 33 1 3.8551 7.8273 4.6211 34 1 1.6848 -1.7634 -1.2402 35 1 1.7010 -0.2263 -2.1427 36 1 5.9691 -1.4403 -0.9112 37 1 7.0477 -2.0300 1.2201 38 1 5.7547 -1.9806 3.3131 39 1 3.3786 -1.3424 3.2812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599750226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = -109.103872 kcal Electronic energy + Delta-G solvation = -23679.595063 eV Core-core repulsion = 20165.874909 eV Total energy + Delta-G solvation = -3513.720154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.82004 -40.52743 -38.60286 -38.42376 -36.78185 -34.84877 -34.07833 -32.06725 -31.62790 -30.13444 -27.80395 -27.29744 -25.02782 -23.72918 -23.42523 -22.60935 -20.84202 -20.08338 -19.06517 -18.97236 -17.99837 -17.17104 -16.95351 -16.74047 -16.26968 -16.19016 -15.92205 -15.54987 -15.39878 -15.11637 -14.90117 -14.69340 -14.60912 -14.05672 -13.70193 -13.42599 -13.37890 -13.09522 -13.04814 -12.83320 -12.63544 -12.31778 -12.23026 -12.10258 -11.80160 -11.57502 -11.45773 -10.96194 -10.82062 -10.21981 -9.66512 -9.11910 -8.33173 -6.40987 0.27042 0.30395 1.23411 1.36704 1.39021 1.50417 1.77639 1.97608 2.26214 2.34075 2.72597 3.00038 3.01585 3.37413 3.54227 3.66313 4.05625 4.11424 4.22139 4.25499 4.31125 4.32936 4.43243 4.48479 4.58152 4.64537 4.65479 4.87031 4.99632 5.03357 5.16397 5.20370 5.29387 5.31673 5.50224 5.56514 5.66728 5.81774 6.17151 6.27105 6.42167 6.65800 7.00292 7.23706 8.83601 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016141 B = 0.004841 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.242781 B = 5781.991500 C = 6537.587031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 C 0.491 3.509 4 O -0.566 6.566 5 N -0.705 5.705 6 C 0.145 3.855 7 C -0.010 4.010 8 C -0.541 4.541 9 H 0.029 0.971 10 C 0.008 3.992 11 N -0.948 5.948 12 Si 0.956 3.044 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.238 1.238 16 C 0.045 3.955 17 O -0.321 6.321 18 C 0.027 3.973 19 C -0.134 4.134 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.117 4.117 23 C 0.022 3.978 24 O -0.291 6.291 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.412 0.588 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.269 0.731 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -25.466 -3.018 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.023 3.977 3 C 0.276 3.724 4 O -0.446 6.446 5 N -0.356 5.356 6 C 0.022 3.978 7 C -0.047 4.047 8 C -0.579 4.579 9 H 0.047 0.953 10 C -0.190 4.190 11 N -0.588 5.588 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.161 1.161 16 C -0.031 4.031 17 O -0.236 6.236 18 C -0.017 4.017 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.022 4.022 24 O -0.206 6.206 25 H 0.129 0.871 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.248 0.752 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.025 -24.898 -3.688 25.489 hybrid contribution -0.036 0.599 0.601 0.849 sum -4.061 -24.299 -3.086 24.829 Atomic orbital electron populations 1.21851 0.85243 1.06574 1.05277 1.22922 1.00144 0.86907 0.87739 1.21346 0.77947 0.89229 0.83847 1.90702 1.50576 1.70655 1.32621 1.46045 1.65106 1.14794 1.09613 1.21087 0.97429 0.80394 0.98899 1.19622 0.97831 0.94765 0.92531 1.21196 1.44576 0.98087 0.94024 0.95285 1.26045 0.94061 0.95227 1.03647 1.70068 1.47642 1.12356 1.28729 0.85576 0.80105 0.78870 0.77604 1.18960 1.20876 1.16139 1.23755 0.78234 1.02354 0.98714 1.86347 1.22079 1.85075 1.30100 1.19382 0.95012 1.02848 0.84508 1.20773 0.91667 1.01962 1.00823 1.21335 1.01459 0.99128 0.90907 1.21352 0.92650 0.99600 0.99892 1.20820 0.95656 1.01586 0.95482 1.19203 0.84569 1.04279 0.94170 1.86352 1.21849 1.72169 1.40272 0.87082 0.89978 0.88350 0.75183 0.94332 0.93057 0.94324 0.95113 0.92209 0.86885 0.84874 0.84258 0.82155 0.81968 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.87 71.98 0.64 -1.47 16 2 C 0.06 1.58 1.05 -11.38 -0.01 1.57 16 3 C 0.49 16.73 5.85 87.66 0.51 17.24 16 4 O -0.57 -23.66 16.00 -2.25 -0.04 -23.70 16 5 N -0.70 -24.55 5.47 -463.06 -2.53 -27.09 16 6 C 0.15 6.27 5.61 86.38 0.48 6.75 16 7 C -0.01 -0.45 4.16 29.85 0.12 -0.33 16 8 C -0.54 -31.38 9.66 25.60 0.25 -31.13 16 9 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 10 C 0.01 0.45 5.47 84.66 0.46 0.91 16 11 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 12 Si 0.96 42.65 27.47 68.60 1.88 44.53 16 13 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 16 C 0.04 1.03 5.58 72.14 0.40 1.43 16 17 O -0.32 -9.69 9.95 -79.50 -0.79 -10.48 16 18 C 0.03 0.78 6.31 22.55 0.14 0.92 16 19 C -0.13 -3.27 9.96 22.37 0.22 -3.05 16 20 C -0.11 -2.12 10.04 22.26 0.22 -1.90 16 21 C -0.12 -2.17 10.04 22.26 0.22 -1.95 16 22 C -0.12 -2.59 9.96 22.37 0.22 -2.36 16 23 C 0.02 0.59 6.17 22.56 0.14 0.73 16 24 O -0.29 -7.22 9.18 -82.63 -0.76 -7.98 16 25 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.41 12.34 7.95 -92.71 -0.74 11.60 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 32 H 0.03 1.34 7.57 -2.39 -0.02 1.33 16 33 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.13 2.84 7.89 -2.39 -0.02 2.82 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -76.48 329.52 2.37 -74.11 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.27 Total: 22.32 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.04 Total: -12.63 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.23 Total: -86.17 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.59 Total: -42.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -76.48 2.37 -74.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599750226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.998 kcal (2) G-P(sol) polarization free energy of solvation -76.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds