Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47546 * 2 1 4 4 N 1.46496 * 110.45893 * 302.55622 * 3 2 1 5 5 S 1.65595 * 120.00154 * 173.61577 * 4 3 2 6 6 O 1.42096 * 104.27757 * 309.92100 * 5 4 3 7 7 O 1.42092 * 104.27796 * 182.06470 * 5 4 3 8 8 C 1.81405 * 104.44976 * 65.98967 * 5 4 3 9 9 C 1.52995 * 109.47288 * 171.13971 * 8 5 4 10 10 C 1.52993 * 109.47532 * 180.02562 * 9 8 5 11 11 C 1.50696 * 109.47622 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99738 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00523 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00259 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99500 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47180 * 89.99937 * 15 13 11 17 17 H 1.48510 * 109.47069 * 209.99824 * 15 13 11 18 18 H 1.48499 * 109.47493 * 329.99513 * 15 13 11 19 19 C 1.54511 * 110.62611 * 179.86461 * 3 2 1 20 20 C 1.54479 * 104.05969 * 241.29908 * 19 3 2 21 21 O 1.44423 * 104.80929 * 336.02763 * 20 19 3 22 22 C 1.44420 * 105.27247 * 40.50680 * 21 20 19 23 23 H 1.08992 * 109.46635 * 304.87844 * 1 2 3 24 24 H 1.09007 * 109.46421 * 64.87331 * 1 2 3 25 25 H 1.09000 * 109.47192 * 184.87094 * 1 2 3 26 26 H 1.09009 * 109.47076 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.47198 * 120.00643 * 2 1 3 28 28 H 0.97003 * 119.99969 * 353.60983 * 4 3 2 29 29 H 1.09004 * 109.46621 * 51.14851 * 8 5 4 30 30 H 1.08991 * 109.47426 * 291.14891 * 8 5 4 31 31 H 1.09004 * 109.47591 * 300.00471 * 9 8 5 32 32 H 1.09004 * 109.46808 * 60.00352 * 9 8 5 33 33 H 1.09004 * 109.46947 * 300.00718 * 10 9 8 34 34 H 1.09004 * 109.46907 * 60.00265 * 10 9 8 35 35 H 0.97006 * 120.00043 * 180.02562 * 14 13 11 36 36 H 1.08994 * 110.51623 * 359.94663 * 19 3 2 37 37 H 1.09007 * 110.50485 * 122.65988 * 19 3 2 38 38 H 1.09005 * 110.37027 * 217.19255 * 20 19 3 39 39 H 1.08998 * 110.36879 * 94.86046 * 20 19 3 40 40 H 1.09000 * 110.37317 * 200.65492 * 22 21 20 41 41 H 1.08999 * 110.36884 * 78.32710 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5145 2.1715 -1.1569 5 16 1.7886 3.7978 -1.3051 6 8 1.4057 4.3339 -0.0461 7 8 1.1031 4.1617 -2.4953 8 6 3.5826 3.9353 -1.5363 9 6 3.9403 5.3761 -1.9062 10 6 5.4532 5.4920 -2.1018 11 6 5.8056 6.9113 -2.4655 12 1 5.0281 7.6564 -2.5484 13 6 7.1204 7.2588 -2.6925 14 7 7.4279 8.4975 -3.0094 15 14 8.4649 5.9699 -2.5499 16 1 8.6687 5.3190 -3.8690 17 1 9.7289 6.6188 -2.1175 18 1 8.0663 4.9472 -1.5496 19 6 3.5849 1.4735 0.0034 20 6 3.9428 2.2016 1.3180 21 8 2.7779 2.9970 1.6283 22 6 1.6475 2.1553 1.3130 23 1 -0.3632 0.5876 0.8430 24 1 -0.3632 0.4364 -0.9305 25 1 -0.3633 -1.0239 0.0873 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.0060 1.7015 -1.8362 29 1 3.8981 3.2658 -2.3366 30 1 4.0902 3.6608 -0.6117 31 1 3.4326 5.6507 -2.8309 32 1 3.6247 6.0456 -1.1059 33 1 5.9612 5.2173 -1.1773 34 1 5.7683 4.8225 -2.9023 35 1 8.3529 8.7419 -3.1695 36 1 3.9873 0.4606 0.0061 37 1 3.9575 2.0314 -0.8558 38 1 4.8122 2.8426 1.1722 39 1 4.1317 1.4794 2.1123 40 1 0.7536 2.7608 1.1634 41 1 1.4844 1.4262 2.1066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616461320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -119.431166 kcal Electronic energy + Delta-G solvation = -23017.258977 eV Core-core repulsion = 19638.534949 eV Total energy + Delta-G solvation = -3378.724028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.33481 -36.79018 -35.94531 -35.69366 -34.85076 -32.31786 -32.08979 -30.81766 -28.37660 -27.92591 -24.33890 -23.71390 -22.39111 -20.82072 -20.30890 -19.22461 -17.69925 -16.93246 -16.76478 -16.28370 -15.80734 -15.48470 -15.35055 -14.75908 -14.45996 -14.25453 -14.17035 -13.66520 -13.44754 -12.80883 -12.55589 -12.39274 -12.19232 -12.05954 -11.95117 -11.84699 -11.77090 -11.56561 -11.49540 -11.41535 -11.17377 -10.93589 -10.79209 -10.65835 -10.16833 -10.06369 -9.84719 -9.66257 -9.33707 -9.22670 -8.57560 -6.07023 -4.05967 0.47478 2.77507 3.26575 3.34009 3.35942 3.74340 3.93948 4.15314 4.33080 4.41076 4.44242 4.47845 4.67677 4.76712 4.86918 5.01012 5.04402 5.13193 5.15462 5.26776 5.38331 5.46210 5.50103 5.54609 5.60784 5.66043 5.80674 5.83488 5.89853 5.93842 6.18627 6.29981 6.68531 6.70665 6.86716 7.14290 7.28970 7.72738 8.49644 8.97903 9.54140 11.06406 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.004677 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.927534 B = 5984.896662 C = 6473.649553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C 0.150 3.850 4 N -1.112 6.112 5 S 2.600 3.400 6 O -0.939 6.939 7 O -0.965 6.965 8 C -0.625 4.625 9 C -0.095 4.095 10 C -0.003 4.003 11 C -0.526 4.526 12 H 0.075 0.925 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.204 4.204 20 C 0.027 3.973 21 O -0.347 6.347 22 C 0.029 3.971 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.415 0.585 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 -21.656 7.570 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.060 3.940 4 N -0.869 5.869 5 S 2.695 3.305 6 O -0.929 6.929 7 O -0.956 6.956 8 C -0.755 4.755 9 C -0.135 4.135 10 C -0.042 4.042 11 C -0.564 4.564 12 H 0.093 0.907 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.243 4.243 20 C -0.050 4.050 21 O -0.265 6.265 22 C -0.049 4.049 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.249 0.751 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.508 -20.548 7.793 24.807 hybrid contribution 1.391 -1.427 -0.501 2.055 sum -10.117 -21.975 7.292 25.267 Atomic orbital electron populations 1.21814 0.94967 1.01954 1.02710 1.21702 0.96850 0.93185 1.03328 1.21547 0.92456 0.93656 0.86376 1.55848 1.69398 1.29429 1.32192 1.05369 0.78223 0.72491 0.74432 1.93620 1.80606 1.76674 1.42032 1.93582 1.71628 1.80977 1.49366 1.30961 1.24888 1.08582 1.11116 1.21294 1.01879 0.88482 1.01796 1.19517 0.90019 0.98071 0.96590 1.21142 0.94138 0.93736 1.47357 0.90730 1.25022 0.98649 0.95220 0.94518 1.69912 1.18791 1.17493 1.47734 0.86780 0.81525 0.82156 0.78810 1.20274 1.21270 1.19068 1.24105 0.95280 1.03880 1.01025 1.23586 0.91197 0.95324 0.94928 1.89413 1.13822 1.36460 1.86761 1.24146 0.92752 0.94296 0.93711 0.92082 0.92261 0.92278 0.90731 0.90234 0.75096 0.85596 0.84622 0.90990 0.91089 0.96230 0.96733 0.92649 0.88754 0.88188 0.88197 0.91686 0.86422 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.55 37.16 0.35 -0.60 16 2 C -0.11 -0.68 4.78 -26.73 -0.13 -0.81 16 3 C 0.15 1.35 0.88 -130.25 -0.11 1.23 16 4 N -1.11 -11.40 5.16 1.80 0.01 -11.39 16 5 S 2.60 38.43 5.28 -107.50 -0.57 37.87 16 6 O -0.94 -16.21 13.56 -66.09 -0.90 -17.11 16 7 O -0.97 -17.20 18.08 -57.54 -1.04 -18.24 16 8 C -0.62 -9.42 4.14 37.15 0.15 -9.27 16 9 C -0.10 -1.90 5.16 -26.74 -0.14 -2.04 16 10 C 0.00 -0.08 4.04 -27.89 -0.11 -0.19 16 11 C -0.53 -15.09 9.66 -34.44 -0.33 -15.43 16 12 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 15 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 19 C -0.20 -1.80 5.73 -25.16 -0.14 -1.94 16 20 C 0.03 0.28 6.66 37.93 0.25 0.53 16 21 O -0.35 -4.76 10.08 -56.44 -0.57 -5.33 16 22 C 0.03 0.32 4.80 37.93 0.18 0.50 16 23 H 0.06 0.39 7.29 -51.93 -0.38 0.01 16 24 H 0.06 0.37 7.07 -51.93 -0.37 0.00 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.41 3.40 7.61 -34.47 -0.26 3.13 16 29 H 0.13 1.59 7.70 -51.92 -0.40 1.19 16 30 H 0.14 1.89 4.72 -51.93 -0.24 1.64 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.09 0.60 7.74 -51.93 -0.40 0.19 16 37 H 0.10 0.95 4.10 -51.92 -0.21 0.73 16 38 H 0.10 1.06 7.61 -51.93 -0.40 0.66 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.12 1.47 6.43 -51.93 -0.33 1.14 16 41 H 0.07 0.56 7.83 -51.93 -0.41 0.16 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -35.83 323.19 -8.50 -44.33 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.29 Total: 1.48 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -0.12 Total: -26.14 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.78 Total: -38.50 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.51 Total: -40.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 38.43 SS G_CDS: -0.57 Total: 37.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.83 -8.50 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616461320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.102 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds