Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47546 * 2 1 4 4 N 1.46496 * 110.45893 * 302.55622 * 3 2 1 5 5 S 1.65595 * 120.00154 * 173.61577 * 4 3 2 6 6 O 1.42096 * 104.27757 * 309.92100 * 5 4 3 7 7 O 1.42092 * 104.27796 * 182.06470 * 5 4 3 8 8 C 1.81405 * 104.44976 * 65.98967 * 5 4 3 9 9 C 1.52995 * 109.47288 * 171.13971 * 8 5 4 10 10 C 1.52993 * 109.47532 * 180.02562 * 9 8 5 11 11 C 1.50696 * 109.47622 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99738 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00523 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00259 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99500 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47180 * 89.99937 * 15 13 11 17 17 H 1.48510 * 109.47069 * 209.99824 * 15 13 11 18 18 H 1.48499 * 109.47493 * 329.99513 * 15 13 11 19 19 C 1.54511 * 110.62611 * 179.86461 * 3 2 1 20 20 C 1.54479 * 104.05969 * 241.29908 * 19 3 2 21 21 O 1.44423 * 104.80929 * 336.02763 * 20 19 3 22 22 C 1.44420 * 105.27247 * 40.50680 * 21 20 19 23 23 H 1.08992 * 109.46635 * 304.87844 * 1 2 3 24 24 H 1.09007 * 109.46421 * 64.87331 * 1 2 3 25 25 H 1.09000 * 109.47192 * 184.87094 * 1 2 3 26 26 H 1.09009 * 109.47076 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.47198 * 120.00643 * 2 1 3 28 28 H 0.97003 * 119.99969 * 353.60983 * 4 3 2 29 29 H 1.09004 * 109.46621 * 51.14851 * 8 5 4 30 30 H 1.08991 * 109.47426 * 291.14891 * 8 5 4 31 31 H 1.09004 * 109.47591 * 300.00471 * 9 8 5 32 32 H 1.09004 * 109.46808 * 60.00352 * 9 8 5 33 33 H 1.09004 * 109.46947 * 300.00718 * 10 9 8 34 34 H 1.09004 * 109.46907 * 60.00265 * 10 9 8 35 35 H 0.97006 * 120.00043 * 180.02562 * 14 13 11 36 36 H 1.08994 * 110.51623 * 359.94663 * 19 3 2 37 37 H 1.09007 * 110.50485 * 122.65988 * 19 3 2 38 38 H 1.09005 * 110.37027 * 217.19255 * 20 19 3 39 39 H 1.08998 * 110.36879 * 94.86046 * 20 19 3 40 40 H 1.09000 * 110.37317 * 200.65492 * 22 21 20 41 41 H 1.08999 * 110.36884 * 78.32710 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5145 2.1715 -1.1569 5 16 1.7886 3.7978 -1.3051 6 8 1.4057 4.3339 -0.0461 7 8 1.1031 4.1617 -2.4953 8 6 3.5826 3.9353 -1.5363 9 6 3.9403 5.3761 -1.9062 10 6 5.4532 5.4920 -2.1018 11 6 5.8056 6.9113 -2.4655 12 1 5.0281 7.6564 -2.5484 13 6 7.1204 7.2588 -2.6925 14 7 7.4279 8.4975 -3.0094 15 14 8.4649 5.9699 -2.5499 16 1 8.6687 5.3190 -3.8690 17 1 9.7289 6.6188 -2.1175 18 1 8.0663 4.9472 -1.5496 19 6 3.5849 1.4735 0.0034 20 6 3.9428 2.2016 1.3180 21 8 2.7779 2.9970 1.6283 22 6 1.6475 2.1553 1.3130 23 1 -0.3632 0.5876 0.8430 24 1 -0.3632 0.4364 -0.9305 25 1 -0.3633 -1.0239 0.0873 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.0060 1.7015 -1.8362 29 1 3.8981 3.2658 -2.3366 30 1 4.0902 3.6608 -0.6117 31 1 3.4326 5.6507 -2.8309 32 1 3.6247 6.0456 -1.1059 33 1 5.9612 5.2173 -1.1773 34 1 5.7683 4.8225 -2.9023 35 1 8.3529 8.7419 -3.1695 36 1 3.9873 0.4606 0.0061 37 1 3.9575 2.0314 -0.8558 38 1 4.8122 2.8426 1.1722 39 1 4.1317 1.4794 2.1123 40 1 0.7536 2.7608 1.1634 41 1 1.4844 1.4262 2.1066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616461320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -147.128375 kcal Electronic energy + Delta-G solvation = -23018.460018 eV Core-core repulsion = 19638.534949 eV Total energy + Delta-G solvation = -3379.925069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09816 -38.07539 -36.99715 -36.72808 -36.53840 -34.31755 -32.78615 -31.68064 -30.05012 -28.71482 -25.49677 -24.93011 -23.17629 -22.23567 -21.36491 -20.30058 -18.98217 -18.74190 -17.73992 -17.42154 -16.79053 -16.55121 -16.33741 -16.16700 -15.72434 -15.53624 -15.01195 -14.85828 -14.40569 -14.20713 -13.82392 -13.58062 -13.37035 -13.22163 -13.16277 -13.10878 -12.84965 -12.69285 -12.62715 -12.39416 -12.28680 -12.07054 -11.85603 -11.69191 -11.64314 -11.44358 -11.36847 -11.21349 -10.87994 -10.77951 -10.24401 -8.30203 -6.36480 -0.71474 1.35905 1.39315 1.50877 1.75365 2.36282 2.72889 3.04777 3.07840 3.22064 3.52717 3.58982 3.75908 3.79288 3.88460 4.02398 4.23492 4.29582 4.31884 4.51994 4.54668 4.58108 4.73763 4.81009 4.86631 4.91750 4.94288 4.96239 5.01398 5.10422 5.16420 5.30969 5.33223 5.44674 5.46762 5.61715 5.93690 6.13956 6.24845 6.71423 7.28082 8.87002 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.004677 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.927534 B = 5984.896662 C = 6473.649553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.105 4.105 3 C 0.148 3.852 4 N -1.094 6.094 5 S 2.615 3.385 6 O -0.969 6.969 7 O -1.001 7.001 8 C -0.620 4.620 9 C -0.100 4.100 10 C -0.002 4.002 11 C -0.545 4.545 12 H 0.027 0.973 13 C 0.001 3.999 14 N -0.953 5.953 15 Si 0.956 3.044 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.237 1.237 19 C -0.203 4.203 20 C 0.017 3.983 21 O -0.387 6.387 22 C 0.021 3.979 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.427 0.573 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 -26.080 8.050 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.144 4.144 3 C 0.059 3.941 4 N -0.856 5.856 5 S 2.710 3.290 6 O -0.958 6.958 7 O -0.991 6.991 8 C -0.750 4.750 9 C -0.139 4.139 10 C -0.040 4.040 11 C -0.583 4.583 12 H 0.046 0.954 13 C -0.196 4.196 14 N -0.593 5.593 15 Si 0.778 3.222 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.160 1.160 19 C -0.241 4.241 20 C -0.060 4.060 21 O -0.306 6.306 22 C -0.057 4.057 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.264 0.736 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.529 -24.982 8.267 28.342 hybrid contribution 0.986 0.016 -0.611 1.160 sum -9.543 -24.966 7.656 27.802 Atomic orbital electron populations 1.21866 0.95307 1.02698 1.02106 1.21739 0.96521 0.90920 1.05187 1.21767 0.92974 0.94862 0.84504 1.55410 1.69317 1.27710 1.33132 1.04613 0.77749 0.73510 0.73085 1.93596 1.81010 1.78161 1.43063 1.93532 1.72495 1.82405 1.50647 1.30931 1.25437 1.05597 1.13032 1.21144 0.99778 0.91871 1.01086 1.19477 0.92348 0.94840 0.97378 1.21551 0.93492 0.95770 1.47518 0.95447 1.26132 1.01772 0.97856 0.93833 1.70090 1.19686 1.20294 1.49263 0.85579 0.77208 0.79297 0.80103 1.18775 1.21099 1.16013 1.24149 0.94666 1.05575 0.99746 1.23808 0.89926 0.95575 0.96696 1.89368 1.15469 1.38465 1.87251 1.24269 0.91364 0.94313 0.95775 0.92945 0.92807 0.90816 0.88989 0.88166 0.73574 0.82406 0.83081 0.91984 0.92547 0.95055 0.94886 0.92406 0.85303 0.88829 0.89038 0.89256 0.88874 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.55 71.98 0.69 -0.80 16 2 C -0.10 -0.83 4.78 30.60 0.15 -0.68 16 3 C 0.15 2.21 0.88 4.62 0.00 2.21 16 4 N -1.09 -20.14 5.16 -148.22 -0.76 -20.90 16 5 S 2.62 76.04 5.28 -56.49 -0.30 75.74 16 6 O -0.97 -34.02 13.56 -119.48 -1.62 -35.64 16 7 O -1.00 -35.79 18.08 -127.65 -2.31 -38.09 16 8 C -0.62 -17.66 4.14 71.98 0.30 -17.36 16 9 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 10 C 0.00 -0.09 4.04 29.84 0.12 0.03 16 11 C -0.55 -32.19 9.66 25.60 0.25 -31.95 16 12 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 13 C 0.00 0.04 5.47 84.66 0.46 0.50 16 14 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 15 Si 0.96 43.27 27.47 68.60 1.88 45.16 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.24 -9.57 6.54 99.48 0.65 -8.91 16 19 C -0.20 -2.75 5.73 31.61 0.18 -2.57 16 20 C 0.02 0.30 6.66 72.48 0.48 0.78 16 21 O -0.39 -10.19 10.08 -128.71 -1.30 -11.48 16 22 C 0.02 0.42 4.80 72.48 0.35 0.77 16 23 H 0.05 0.57 7.29 -2.39 -0.02 0.56 16 24 H 0.05 0.54 7.07 -2.38 -0.02 0.53 16 25 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.10 0.46 8.09 -2.39 -0.02 0.44 16 28 H 0.43 5.96 7.61 -96.75 -0.74 5.23 16 29 H 0.16 3.44 7.70 -2.39 -0.02 3.43 16 30 H 0.15 3.87 4.72 -2.39 -0.01 3.86 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 34 H 0.03 1.40 7.57 -2.38 -0.02 1.39 16 35 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 36 H 0.13 0.88 7.74 -2.39 -0.02 0.86 16 37 H 0.09 1.39 4.10 -2.38 -0.01 1.38 16 38 H 0.09 1.74 7.61 -2.38 -0.02 1.72 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 2.33 6.43 -2.39 -0.02 2.31 16 41 H 0.09 1.33 7.83 -2.39 -0.02 1.31 16 Total: -1.00 -81.37 323.19 -0.73 -82.10 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.24 Total: 16.52 kcal Atomic # 6 Polarization: -56.05 SS G_CDS: 3.14 Total: -52.92 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -0.46 Total: -81.38 kcal Atomic # 8 Polarization: -80.00 SS G_CDS: -5.23 Total: -85.22 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Atomic # 16 Polarization: 76.04 SS G_CDS: -0.30 Total: 75.74 kcal Total: -81.37 -0.73 -82.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616461320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.032 kcal (2) G-P(sol) polarization free energy of solvation -81.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds