Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 110.45909 * 2 1 4 4 O 1.21285 * 120.00331 * 239.30488 * 3 2 1 5 5 N 1.34775 * 119.99987 * 59.29774 * 3 2 1 6 6 C 1.39920 * 120.00499 * 174.84851 * 5 3 2 7 7 C 1.38965 * 120.03281 * 326.08632 * 6 5 3 8 8 C 1.38153 * 120.06618 * 180.02562 * 7 6 5 9 9 C 1.38170 * 120.14154 * 359.97438 * 8 7 6 10 10 C 1.38906 * 120.06699 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.03206 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00322 * 186.08466 * 11 10 9 13 13 H 1.08004 * 119.99455 * 5.40109 * 12 11 10 14 14 C 1.38648 * 120.00067 * 185.39197 * 12 11 10 15 15 N 1.31552 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99741 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47508 * 60.00342 * 16 14 12 18 18 H 1.48501 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47278 * 299.99946 * 16 14 12 20 20 C 1.38716 * 120.03917 * 146.35929 * 6 5 3 21 21 C 1.54512 * 110.51175 * 237.39764 * 2 1 3 22 22 C 1.54798 * 103.91117 * 241.18317 * 21 2 1 23 23 O 1.44424 * 104.85974 * 336.12013 * 22 21 2 24 24 C 1.44426 * 105.27332 * 40.45682 * 23 22 21 25 25 H 1.09006 * 109.47354 * 60.69988 * 1 2 3 26 26 H 1.09000 * 109.47297 * 180.69651 * 1 2 3 27 27 H 1.08999 * 109.47631 * 300.69907 * 1 2 3 28 28 H 0.97005 * 119.99866 * 354.84758 * 5 3 2 29 29 H 1.08000 * 119.96603 * 0.03911 * 7 6 5 30 30 H 1.08007 * 119.93205 * 180.02562 * 8 7 6 31 31 H 1.08001 * 119.96401 * 180.02562 * 9 8 7 32 32 H 0.97009 * 120.00253 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.07026 * 359.97438 * 20 6 5 34 34 H 1.08998 * 110.51146 * 359.86229 * 21 2 1 35 35 H 1.08997 * 110.51372 * 122.57680 * 21 2 1 36 36 H 1.08995 * 110.39330 * 217.24707 * 22 21 2 37 37 H 1.09005 * 110.39672 * 94.99604 * 22 21 2 38 38 H 1.09006 * 110.37497 * 200.65690 * 24 23 22 39 39 H 1.09005 * 110.46291 * 78.37089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7710 1.7928 -0.9032 5 7 1.7339 2.2516 1.0036 6 6 2.3079 3.5263 1.0613 7 6 3.6118 3.7225 0.6226 8 6 4.1794 4.9808 0.6798 9 6 3.4530 6.0478 1.1726 10 6 2.1493 5.8582 1.6127 11 8 1.4361 6.9072 2.0962 12 6 0.2253 6.6336 2.6227 13 1 -0.0996 5.6087 2.7256 14 6 -0.6024 7.6678 3.0320 15 7 -0.2068 8.9161 2.9064 16 14 -2.2796 7.2886 3.7621 17 1 -2.1123 6.4587 4.9821 18 1 -2.9637 8.5581 4.1164 19 1 -3.0963 6.5476 2.7675 20 6 1.5780 4.5945 1.5619 21 6 2.0713 -0.7797 -1.2191 22 6 2.8801 -1.9399 -0.5896 23 8 3.2417 -1.4678 0.7265 24 6 2.0713 -0.7796 1.2188 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0125 27 1 -0.3634 0.5246 0.8836 28 1 1.1035 1.9722 1.6859 29 1 4.1819 2.8905 0.2363 30 1 5.1929 5.1308 0.3378 31 1 3.8995 7.0303 1.2156 32 1 -0.7861 9.6397 3.1924 33 1 0.5659 4.4439 1.9072 34 1 1.2490 -1.1673 -1.8205 35 1 2.7200 -0.1440 -1.8218 36 1 3.7743 -2.1430 -1.1788 37 1 2.2639 -2.8360 -0.5153 38 1 2.3441 -0.0914 2.0188 39 1 1.3287 -1.4953 1.5717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687412040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = -80.507589 kcal Electronic energy + Delta-G solvation = -23053.541152 eV Core-core repulsion = 19541.061026 eV Total energy + Delta-G solvation = -3512.480126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99417 -39.27939 -38.30514 -36.42516 -34.46437 -33.78207 -32.25126 -30.18192 -29.22148 -28.46681 -26.72171 -25.35786 -23.92991 -22.92073 -21.84244 -21.00863 -19.52152 -17.96633 -17.94370 -17.00229 -16.28841 -16.02091 -15.60381 -15.20729 -15.09598 -14.73587 -14.37230 -14.17460 -13.83248 -13.58747 -13.46891 -13.13075 -12.96977 -12.69964 -12.33201 -12.00963 -11.78356 -11.70435 -11.51646 -11.33838 -11.13735 -10.97257 -10.95451 -10.82504 -10.49514 -10.20432 -9.81233 -9.62565 -9.38587 -8.82686 -7.76162 -7.17762 -6.46683 -4.06706 1.92395 2.35444 2.77088 3.09676 3.10764 3.13612 3.14110 3.68843 3.93803 4.04555 4.37257 4.56602 4.58113 4.73320 4.85770 4.92685 5.08094 5.16945 5.23207 5.26172 5.37321 5.41354 5.47430 5.60756 5.70164 5.75342 5.92308 5.97569 6.06209 6.22383 6.26108 6.45944 6.61786 6.94102 6.96660 7.09216 7.29561 7.39865 7.64830 7.78617 7.97062 8.25068 8.98389 9.68875 10.71305 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.003949 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.272851 B = 7088.958666 C = 8083.715020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.527 3.473 4 O -0.512 6.512 5 N -0.667 5.667 6 C 0.179 3.821 7 C -0.205 4.205 8 C -0.063 4.063 9 C -0.200 4.200 10 C 0.168 3.832 11 O -0.176 6.176 12 C -0.393 4.393 13 H 0.089 0.911 14 C 0.040 3.960 15 N -0.862 5.862 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.256 4.256 21 C -0.144 4.144 22 C 0.046 3.954 23 O -0.369 6.369 24 C 0.057 3.943 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.405 0.595 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -19.633 -3.796 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 C 0.313 3.687 4 O -0.387 6.387 5 N -0.311 5.311 6 C 0.086 3.914 7 C -0.225 4.225 8 C -0.082 4.082 9 C -0.219 4.219 10 C 0.114 3.886 11 O -0.079 6.079 12 C -0.470 4.470 13 H 0.107 0.893 14 C -0.164 4.164 15 N -0.497 5.497 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.277 4.277 21 C -0.181 4.181 22 C -0.031 4.031 23 O -0.287 6.287 24 C -0.020 4.020 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.240 0.760 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.171 -18.947 -4.274 19.459 hybrid contribution -1.545 -0.298 0.580 1.677 sum -0.374 -19.245 -3.694 19.600 Atomic orbital electron populations 1.21846 0.91104 1.03194 1.03428 1.22190 0.98073 0.93350 0.98414 1.20192 0.80549 0.86529 0.81424 1.90692 1.36372 1.76500 1.35109 1.43448 1.45929 1.13970 1.27775 1.17406 0.91888 0.83003 0.99063 1.20537 0.94137 0.98016 1.09848 1.20534 0.98506 0.91826 0.97292 1.20258 0.93246 0.99624 1.08811 1.19077 0.91295 0.87147 0.91087 1.84022 1.29121 1.28833 1.65928 1.21216 0.91510 0.94278 1.39949 0.89339 1.25270 0.99408 0.94452 0.97298 1.70024 1.37085 0.98563 1.43997 0.85806 0.80344 0.78118 0.79284 1.19511 1.20238 1.19587 1.20803 1.01299 0.92015 1.13598 1.23131 1.01027 0.97113 0.96874 1.23502 0.99746 0.95894 0.83959 1.89170 1.34780 1.73583 1.31204 1.23530 0.88425 0.94999 0.95057 0.91230 0.90953 0.91528 0.75968 0.86388 0.86575 0.86341 0.91936 0.85269 0.89777 0.88037 0.88810 0.92170 0.88632 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.19 37.15 0.30 -0.78 16 2 C -0.12 -1.21 0.89 -154.10 -0.14 -1.35 16 3 C 0.53 7.79 6.21 -10.99 -0.07 7.72 16 4 O -0.51 -9.46 13.00 5.55 0.07 -9.39 16 5 N -0.67 -10.01 5.00 -9.88 -0.05 -10.06 16 6 C 0.18 3.44 6.26 -83.72 -0.52 2.92 16 7 C -0.20 -4.00 8.65 -39.34 -0.34 -4.34 16 8 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 9 C -0.20 -4.31 9.99 -39.36 -0.39 -4.71 16 10 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 11 O -0.18 -4.98 9.76 0.04 0.00 -4.98 16 12 C -0.39 -10.82 9.44 30.88 0.29 -10.53 16 13 H 0.09 2.22 5.30 -52.48 -0.28 1.94 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 16 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.26 -5.51 9.05 -39.21 -0.35 -5.87 16 21 C -0.14 -1.40 6.34 -24.99 -0.16 -1.56 16 22 C 0.05 0.41 7.64 38.10 0.29 0.70 16 23 O -0.37 -4.39 11.65 -35.23 -0.41 -4.80 16 24 C 0.06 0.55 6.71 37.93 0.25 0.81 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.07 0.47 7.49 -51.93 -0.39 0.09 16 28 H 0.41 4.76 8.12 -40.82 -0.33 4.43 16 29 H 0.12 2.28 6.45 -52.49 -0.34 1.94 16 30 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 31 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.13 2.71 5.71 -52.49 -0.30 2.41 16 34 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 35 H 0.10 1.24 6.50 -51.93 -0.34 0.90 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 39 H 0.07 0.53 7.85 -51.93 -0.41 0.12 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -33.48 325.30 -6.19 -39.67 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.85 Total: 7.70 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.59 Total: -13.76 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.71 Total: -34.39 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.34 Total: -19.17 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.48 -6.19 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687412040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.837 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds