Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 110.45909 * 2 1 4 4 O 1.21285 * 120.00331 * 239.30488 * 3 2 1 5 5 N 1.34775 * 119.99987 * 59.29774 * 3 2 1 6 6 C 1.39920 * 120.00499 * 174.84851 * 5 3 2 7 7 C 1.38965 * 120.03281 * 326.08632 * 6 5 3 8 8 C 1.38153 * 120.06618 * 180.02562 * 7 6 5 9 9 C 1.38170 * 120.14154 * 359.97438 * 8 7 6 10 10 C 1.38906 * 120.06699 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.03206 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00322 * 186.08466 * 11 10 9 13 13 H 1.08004 * 119.99455 * 5.40109 * 12 11 10 14 14 C 1.38648 * 120.00067 * 185.39197 * 12 11 10 15 15 N 1.31552 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99741 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47508 * 60.00342 * 16 14 12 18 18 H 1.48501 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47278 * 299.99946 * 16 14 12 20 20 C 1.38716 * 120.03917 * 146.35929 * 6 5 3 21 21 C 1.54512 * 110.51175 * 237.39764 * 2 1 3 22 22 C 1.54798 * 103.91117 * 241.18317 * 21 2 1 23 23 O 1.44424 * 104.85974 * 336.12013 * 22 21 2 24 24 C 1.44426 * 105.27332 * 40.45682 * 23 22 21 25 25 H 1.09006 * 109.47354 * 60.69988 * 1 2 3 26 26 H 1.09000 * 109.47297 * 180.69651 * 1 2 3 27 27 H 1.08999 * 109.47631 * 300.69907 * 1 2 3 28 28 H 0.97005 * 119.99866 * 354.84758 * 5 3 2 29 29 H 1.08000 * 119.96603 * 0.03911 * 7 6 5 30 30 H 1.08007 * 119.93205 * 180.02562 * 8 7 6 31 31 H 1.08001 * 119.96401 * 180.02562 * 9 8 7 32 32 H 0.97009 * 120.00253 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.07026 * 359.97438 * 20 6 5 34 34 H 1.08998 * 110.51146 * 359.86229 * 21 2 1 35 35 H 1.08997 * 110.51372 * 122.57680 * 21 2 1 36 36 H 1.08995 * 110.39330 * 217.24707 * 22 21 2 37 37 H 1.09005 * 110.39672 * 94.99604 * 22 21 2 38 38 H 1.09006 * 110.37497 * 200.65690 * 24 23 22 39 39 H 1.09005 * 110.46291 * 78.37089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7710 1.7928 -0.9032 5 7 1.7339 2.2516 1.0036 6 6 2.3079 3.5263 1.0613 7 6 3.6118 3.7225 0.6226 8 6 4.1794 4.9808 0.6798 9 6 3.4530 6.0478 1.1726 10 6 2.1493 5.8582 1.6127 11 8 1.4361 6.9072 2.0962 12 6 0.2253 6.6336 2.6227 13 1 -0.0996 5.6087 2.7256 14 6 -0.6024 7.6678 3.0320 15 7 -0.2068 8.9161 2.9064 16 14 -2.2796 7.2886 3.7621 17 1 -2.1123 6.4587 4.9821 18 1 -2.9637 8.5581 4.1164 19 1 -3.0963 6.5476 2.7675 20 6 1.5780 4.5945 1.5619 21 6 2.0713 -0.7797 -1.2191 22 6 2.8801 -1.9399 -0.5896 23 8 3.2417 -1.4678 0.7265 24 6 2.0713 -0.7796 1.2188 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0125 27 1 -0.3634 0.5246 0.8836 28 1 1.1035 1.9722 1.6859 29 1 4.1819 2.8905 0.2363 30 1 5.1929 5.1308 0.3378 31 1 3.8995 7.0303 1.2156 32 1 -0.7861 9.6397 3.1924 33 1 0.5659 4.4439 1.9072 34 1 1.2490 -1.1673 -1.8205 35 1 2.7200 -0.1440 -1.8218 36 1 3.7743 -2.1430 -1.1788 37 1 2.2639 -2.8360 -0.5153 38 1 2.3441 -0.0914 2.0188 39 1 1.3287 -1.4953 1.5717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687412040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -103.964421 kcal Electronic energy + Delta-G solvation = -23054.558317 eV Core-core repulsion = 19541.061026 eV Total energy + Delta-G solvation = -3513.497291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10624 -40.76430 -39.61461 -38.07956 -35.82671 -34.73482 -34.20846 -31.25810 -30.65710 -29.98989 -27.40237 -27.31768 -25.04244 -23.83252 -23.53829 -22.35792 -20.78672 -19.69905 -19.37523 -18.30821 -17.30660 -17.12071 -16.83621 -16.72461 -16.24134 -16.15231 -15.81448 -15.63543 -15.44357 -15.13167 -14.61484 -14.27323 -14.08915 -13.77018 -13.59237 -13.34716 -13.29504 -12.77317 -12.67306 -12.59768 -12.48417 -12.44513 -12.14819 -12.05879 -11.68138 -11.49082 -11.33722 -11.00283 -10.74461 -10.60037 -9.39691 -8.91675 -8.46487 -6.15823 0.34945 0.65852 1.36444 1.45691 1.52738 1.53244 1.92683 2.18437 2.81185 2.97069 3.15416 3.24460 3.46292 3.51234 3.81125 3.95478 4.10004 4.17391 4.28720 4.29009 4.40932 4.52169 4.58514 4.63199 4.66406 4.74491 4.80885 4.84811 4.93778 4.99161 5.09732 5.15625 5.19091 5.35085 5.43784 5.63179 5.64042 5.76760 6.00477 6.12711 6.38247 6.97397 7.03242 7.76295 8.76329 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.003949 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.272851 B = 7088.958666 C = 8083.715020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.522 3.478 4 O -0.553 6.553 5 N -0.659 5.659 6 C 0.186 3.814 7 C -0.202 4.202 8 C -0.052 4.052 9 C -0.213 4.213 10 C 0.136 3.864 11 O -0.225 6.225 12 C -0.416 4.416 13 H 0.104 0.896 14 C -0.022 4.022 15 N -0.920 5.920 16 Si 1.019 2.981 17 H -0.254 1.254 18 H -0.275 1.275 19 H -0.256 1.256 20 C -0.258 4.258 21 C -0.144 4.144 22 C 0.045 3.955 23 O -0.400 6.400 24 C 0.056 3.944 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.422 0.578 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.273 0.727 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -23.110 -3.686 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C 0.311 3.689 4 O -0.430 6.430 5 N -0.305 5.305 6 C 0.092 3.908 7 C -0.223 4.223 8 C -0.070 4.070 9 C -0.233 4.233 10 C 0.084 3.916 11 O -0.131 6.131 12 C -0.491 4.491 13 H 0.122 0.878 14 C -0.219 4.219 15 N -0.558 5.558 16 Si 0.838 3.162 17 H -0.178 1.178 18 H -0.199 1.199 19 H -0.180 1.180 20 C -0.279 4.279 21 C -0.182 4.182 22 C -0.032 4.032 23 O -0.319 6.319 24 C -0.020 4.020 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.143 0.857 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.079 -22.494 -4.169 22.877 hybrid contribution -0.926 0.600 0.403 1.174 sum -1.004 -21.894 -3.766 22.238 Atomic orbital electron populations 1.21911 0.88725 1.05322 1.03457 1.22241 0.99729 0.89858 0.99391 1.21144 0.79509 0.88025 0.80206 1.90674 1.38153 1.77585 1.36561 1.43456 1.46037 1.12416 1.28566 1.17452 0.91697 0.84289 0.97391 1.20813 0.94307 0.98352 1.08786 1.20904 0.99787 0.90785 0.95538 1.20478 0.92800 1.00680 1.09361 1.19591 0.92190 0.87612 0.92191 1.83991 1.30126 1.30892 1.68138 1.21792 0.91641 0.95370 1.40337 0.87825 1.26615 1.03870 0.93981 0.97477 1.70183 1.39182 0.99939 1.46494 0.84649 0.74369 0.78265 0.78957 1.17814 1.19921 1.18042 1.20838 1.01577 0.91751 1.13777 1.23155 1.01502 0.96941 0.96599 1.23670 1.00304 0.96404 0.82774 1.89140 1.36264 1.74018 1.32484 1.23696 0.88616 0.95504 0.94226 0.92119 0.87810 0.90661 0.73957 0.85749 0.82954 0.86182 0.91804 0.85010 0.87159 0.91063 0.88702 0.89173 0.89279 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.19 71.98 0.59 -1.04 16 2 C -0.11 -1.95 0.89 -51.91 -0.05 -2.00 16 3 C 0.52 14.66 6.21 87.66 0.54 15.21 16 4 O -0.55 -20.08 13.00 -3.05 -0.04 -20.12 16 5 N -0.66 -18.75 5.00 -303.56 -1.52 -20.27 16 6 C 0.19 7.00 6.26 38.14 0.24 7.24 16 7 C -0.20 -7.67 8.65 22.42 0.19 -7.47 16 8 C -0.05 -1.93 10.03 22.23 0.22 -1.70 16 9 C -0.21 -9.39 9.99 22.41 0.22 -9.16 16 10 C 0.14 6.79 6.64 22.56 0.15 6.94 16 11 O -0.23 -13.42 9.76 -22.77 -0.22 -13.64 16 12 C -0.42 -23.59 9.44 67.92 0.64 -22.95 16 13 H 0.10 5.28 5.30 -2.91 -0.02 5.26 16 14 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 15 N -0.92 -55.84 13.67 21.61 0.30 -55.54 16 16 Si 1.02 41.31 29.55 68.60 2.03 43.34 16 17 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 C -0.26 -11.20 9.05 22.51 0.20 -10.99 16 21 C -0.14 -2.46 6.34 31.72 0.20 -2.26 16 22 C 0.04 0.67 7.64 72.60 0.55 1.23 16 23 O -0.40 -8.54 11.65 -148.98 -1.74 -10.27 16 24 C 0.06 0.91 6.71 72.48 0.49 1.39 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.10 0.64 8.12 -2.39 -0.02 0.62 16 27 H 0.07 0.78 7.49 -2.39 -0.02 0.76 16 28 H 0.42 9.01 8.12 -92.70 -0.75 8.26 16 29 H 0.12 4.65 6.45 -2.91 -0.02 4.63 16 30 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 32 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 33 H 0.13 5.54 5.71 -2.91 -0.02 5.53 16 34 H 0.11 1.27 7.73 -2.39 -0.02 1.25 16 35 H 0.07 1.69 6.50 -2.39 -0.02 1.67 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.09 1.52 7.66 -2.38 -0.02 1.50 16 39 H 0.11 1.02 7.85 -2.38 -0.02 1.00 16 Total: -1.00 -77.05 325.30 3.81 -73.24 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.33 Total: 29.58 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.67 Total: -26.31 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -1.22 Total: -75.81 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -2.00 Total: -44.03 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -77.05 3.81 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687412040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.727 kcal (2) G-P(sol) polarization free energy of solvation -77.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds