Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 110.45599 * 2 1 4 4 O 1.21291 * 120.00134 * 118.85038 * 3 2 1 5 5 N 1.34783 * 119.99911 * 298.84821 * 3 2 1 6 6 C 1.39924 * 119.99942 * 174.79414 * 5 3 2 7 7 C 1.38970 * 120.03346 * 326.28665 * 6 5 3 8 8 C 1.38153 * 120.06305 * 180.02562 * 7 6 5 9 9 C 1.38176 * 120.14174 * 359.75112 * 8 7 6 10 10 C 1.38903 * 120.06594 * 0.50305 * 9 8 7 11 11 O 1.35751 * 120.03329 * 179.76774 * 10 9 8 12 12 C 1.34831 * 117.00513 * 185.64174 * 11 10 9 13 13 H 1.08004 * 119.99548 * 5.40381 * 12 11 10 14 14 C 1.38653 * 120.00225 * 185.40762 * 12 11 10 15 15 N 1.31558 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99892 * 180.27494 * 14 12 11 17 17 H 1.48494 * 109.47118 * 269.72556 * 16 14 12 18 18 H 1.48504 * 109.46984 * 29.72512 * 16 14 12 19 19 H 1.48494 * 109.46928 * 149.72231 * 16 14 12 20 20 C 1.38706 * 120.03592 * 146.31046 * 6 5 3 21 21 C 1.54509 * 110.62886 * 122.68408 * 2 1 3 22 22 C 1.54476 * 104.05997 * 118.70371 * 21 2 1 23 23 O 1.44423 * 104.80659 * 336.01923 * 22 21 2 24 24 C 1.44425 * 105.27423 * 40.51543 * 23 22 21 25 25 H 1.08995 * 109.47639 * 59.29853 * 1 2 3 26 26 H 1.09002 * 109.46973 * 179.30326 * 1 2 3 27 27 H 1.09010 * 109.47009 * 299.29991 * 1 2 3 28 28 H 0.96996 * 119.99638 * 354.79797 * 5 3 2 29 29 H 1.07998 * 119.96772 * 0.04799 * 7 6 5 30 30 H 1.08007 * 119.92878 * 179.97438 * 8 7 6 31 31 H 1.07996 * 119.96477 * 180.27432 * 9 8 7 32 32 H 0.96998 * 119.99561 * 179.97438 * 15 14 12 33 33 H 1.07998 * 120.07116 * 0.02562 * 20 6 5 34 34 H 1.09003 * 110.51304 * 237.34902 * 21 2 1 35 35 H 1.08996 * 110.51345 * 0.05900 * 21 2 1 36 36 H 1.09007 * 110.37332 * 217.18816 * 22 21 2 37 37 H 1.09004 * 110.46702 * 94.90140 * 22 21 2 38 38 H 1.09001 * 110.37369 * 200.66214 * 24 23 22 39 39 H 1.08997 * 110.46443 * 78.36468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7435 1.8031 0.9200 5 7 1.7645 2.2402 -1.0224 6 6 2.1606 3.5812 -0.9716 7 6 2.1938 4.2510 0.2456 8 6 2.5844 5.5752 0.2965 9 6 2.9479 6.2363 -0.8611 10 6 2.9118 5.5739 -2.0814 11 8 3.2646 6.2254 -3.2189 12 6 3.0961 5.5631 -4.3812 13 1 2.6161 4.5956 -4.3867 14 6 3.5392 6.1239 -5.5693 15 7 4.1235 7.3026 -5.5627 16 14 3.2988 5.2097 -7.1805 17 1 4.4800 4.3487 -7.4421 18 1 2.0803 4.3653 -7.0934 19 1 3.1448 6.1883 -8.2867 20 6 2.5201 4.2436 -2.1360 21 6 2.0743 -0.7809 1.2171 22 6 2.8801 -1.9398 0.5895 23 8 2.3101 -2.1159 -0.7257 24 6 2.0713 -0.7796 -1.2189 25 1 -0.3634 0.5246 -0.8836 26 1 -0.3633 -1.0276 -0.0125 27 1 -0.3633 0.5030 0.8963 28 1 1.2796 1.9066 -1.7934 29 1 1.9144 3.7358 1.1527 30 1 2.6090 6.0938 1.2436 31 1 3.2570 7.2702 -0.8174 32 1 4.4337 7.6948 -6.3938 33 1 2.4944 3.7256 -3.0833 34 1 2.7244 -0.1456 1.8188 35 1 1.2535 -1.1690 1.8201 36 1 2.7604 -2.8485 1.1797 37 1 3.9344 -1.6738 0.5136 38 1 1.3300 -0.7968 -2.0179 39 1 3.0000 -0.3325 -1.5733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687412041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -81.655727 kcal Electronic energy + Delta-G solvation = -23021.944975 eV Core-core repulsion = 19509.415062 eV Total energy + Delta-G solvation = -3512.529913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00696 -39.32548 -38.37336 -36.46766 -34.46316 -33.68424 -32.26608 -30.21467 -29.26880 -28.52150 -26.85732 -25.36980 -23.72685 -22.94890 -21.87352 -21.06593 -19.53481 -18.00380 -17.93565 -17.17405 -16.42658 -15.62767 -15.57120 -15.39631 -15.13248 -14.73088 -14.40250 -14.20937 -13.86331 -13.62268 -13.54281 -13.03484 -12.86459 -12.59803 -12.47975 -12.18578 -11.80338 -11.59419 -11.52478 -11.37016 -11.16043 -11.10460 -10.94477 -10.82711 -10.48680 -10.03813 -9.91150 -9.66870 -9.42713 -8.84608 -7.79493 -7.20878 -6.48378 -4.08366 1.87891 2.31903 2.73505 3.07085 3.09598 3.10644 3.14824 3.70195 3.92769 4.03768 4.40735 4.50037 4.55550 4.72525 4.91206 4.93435 5.06297 5.23415 5.24065 5.32299 5.41666 5.47180 5.49285 5.65898 5.67817 5.79859 5.82435 5.93648 6.02280 6.18871 6.22829 6.44612 6.58030 6.90130 6.93110 7.07232 7.25800 7.37414 7.60493 7.75136 7.95381 8.19264 8.96863 9.66748 10.69594 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.004149 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.048510 B = 6746.953082 C = 7959.236255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C 0.524 3.476 4 O -0.514 6.514 5 N -0.665 5.665 6 C 0.178 3.822 7 C -0.206 4.206 8 C -0.063 4.063 9 C -0.199 4.199 10 C 0.168 3.832 11 O -0.175 6.175 12 C -0.393 4.393 13 H 0.090 0.910 14 C 0.040 3.960 15 N -0.861 5.861 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.268 1.268 19 H -0.277 1.277 20 C -0.255 4.255 21 C -0.143 4.143 22 C 0.044 3.956 23 O -0.370 6.370 24 C 0.056 3.944 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.406 0.594 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.270 0.730 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 -15.232 9.152 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C 0.310 3.690 4 O -0.389 6.389 5 N -0.309 5.309 6 C 0.086 3.914 7 C -0.227 4.227 8 C -0.082 4.082 9 C -0.219 4.219 10 C 0.114 3.886 11 O -0.079 6.079 12 C -0.469 4.469 13 H 0.107 0.893 14 C -0.164 4.164 15 N -0.496 5.496 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.192 1.192 19 H -0.202 1.202 20 C -0.277 4.277 21 C -0.180 4.180 22 C -0.033 4.033 23 O -0.288 6.288 24 C -0.021 4.021 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.241 0.759 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.209 -14.801 9.496 18.649 hybrid contribution -0.264 -0.449 -1.168 1.279 sum -6.473 -15.250 8.328 18.543 Atomic orbital electron populations 1.21830 0.91027 1.03304 1.03014 1.22183 0.98483 0.92804 0.98411 1.20274 0.79822 0.86678 0.82207 1.90701 1.36564 1.76339 1.35276 1.43471 1.56849 1.08925 1.21659 1.17413 0.97707 0.81906 0.94420 1.20513 1.10880 0.94945 0.96314 1.20531 0.97127 0.93656 0.96859 1.20259 1.10554 1.00666 0.90437 1.19080 0.91732 0.89783 0.88010 1.84022 1.72408 1.39941 1.11479 1.21269 1.40020 1.03993 0.81663 0.89261 1.25281 0.96013 0.96268 0.98863 1.70035 1.36296 1.15066 1.28186 0.85731 0.78949 0.78768 0.80085 1.19887 1.19233 1.20201 1.20815 1.12889 0.96265 0.97725 1.23041 1.01196 0.96932 0.96876 1.23478 0.97228 0.98794 0.83792 1.89125 1.82987 1.25217 1.31481 1.23508 1.00798 0.82816 0.95019 0.91662 0.90752 0.91563 0.75882 0.86447 0.86584 0.86331 0.91968 0.85230 0.87951 0.89919 0.88771 0.91922 0.88013 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.22 37.16 0.31 -0.80 16 2 C -0.12 -1.20 0.89 -154.09 -0.14 -1.33 16 3 C 0.52 7.42 6.13 -10.98 -0.07 7.35 16 4 O -0.51 -9.05 13.00 5.55 0.07 -8.98 16 5 N -0.67 -9.67 5.20 -9.88 -0.05 -9.72 16 6 C 0.18 3.34 6.27 -83.72 -0.52 2.81 16 7 C -0.21 -3.88 8.66 -39.34 -0.34 -4.22 16 8 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 9 C -0.20 -4.23 9.99 -39.36 -0.39 -4.63 16 10 C 0.17 4.03 6.64 -39.14 -0.26 3.77 16 11 O -0.18 -4.93 9.76 0.04 0.00 -4.93 16 12 C -0.39 -10.75 9.44 30.89 0.29 -10.46 16 13 H 0.09 2.23 5.30 -52.48 -0.28 1.95 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 16 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 C -0.26 -5.43 9.05 -39.21 -0.35 -5.78 16 21 C -0.14 -1.40 6.32 -25.16 -0.16 -1.56 16 22 C 0.04 0.41 7.63 37.93 0.29 0.70 16 23 O -0.37 -4.12 11.65 -35.23 -0.41 -4.53 16 24 C 0.06 0.56 6.60 37.94 0.25 0.81 16 25 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.41 4.66 8.48 -40.82 -0.35 4.32 16 29 H 0.12 2.15 6.44 -52.49 -0.34 1.81 16 30 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.13 2.69 5.71 -52.49 -0.30 2.39 16 34 H 0.10 1.18 6.51 -51.93 -0.34 0.84 16 35 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 36 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 39 H 0.07 0.73 7.86 -51.93 -0.41 0.33 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -32.56 326.27 -6.23 -38.79 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.90 Total: 7.53 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.59 Total: -13.91 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.71 Total: -33.91 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.34 Total: -18.44 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.56 -6.23 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687412041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.869 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds