Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 110.45599 * 2 1 4 4 O 1.21291 * 120.00134 * 118.85038 * 3 2 1 5 5 N 1.34783 * 119.99911 * 298.84821 * 3 2 1 6 6 C 1.39924 * 119.99942 * 174.79414 * 5 3 2 7 7 C 1.38970 * 120.03346 * 326.28665 * 6 5 3 8 8 C 1.38153 * 120.06305 * 180.02562 * 7 6 5 9 9 C 1.38176 * 120.14174 * 359.75112 * 8 7 6 10 10 C 1.38903 * 120.06594 * 0.50305 * 9 8 7 11 11 O 1.35751 * 120.03329 * 179.76774 * 10 9 8 12 12 C 1.34831 * 117.00513 * 185.64174 * 11 10 9 13 13 H 1.08004 * 119.99548 * 5.40381 * 12 11 10 14 14 C 1.38653 * 120.00225 * 185.40762 * 12 11 10 15 15 N 1.31558 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99892 * 180.27494 * 14 12 11 17 17 H 1.48494 * 109.47118 * 269.72556 * 16 14 12 18 18 H 1.48504 * 109.46984 * 29.72512 * 16 14 12 19 19 H 1.48494 * 109.46928 * 149.72231 * 16 14 12 20 20 C 1.38706 * 120.03592 * 146.31046 * 6 5 3 21 21 C 1.54509 * 110.62886 * 122.68408 * 2 1 3 22 22 C 1.54476 * 104.05997 * 118.70371 * 21 2 1 23 23 O 1.44423 * 104.80659 * 336.01923 * 22 21 2 24 24 C 1.44425 * 105.27423 * 40.51543 * 23 22 21 25 25 H 1.08995 * 109.47639 * 59.29853 * 1 2 3 26 26 H 1.09002 * 109.46973 * 179.30326 * 1 2 3 27 27 H 1.09010 * 109.47009 * 299.29991 * 1 2 3 28 28 H 0.96996 * 119.99638 * 354.79797 * 5 3 2 29 29 H 1.07998 * 119.96772 * 0.04799 * 7 6 5 30 30 H 1.08007 * 119.92878 * 179.97438 * 8 7 6 31 31 H 1.07996 * 119.96477 * 180.27432 * 9 8 7 32 32 H 0.96998 * 119.99561 * 179.97438 * 15 14 12 33 33 H 1.07998 * 120.07116 * 0.02562 * 20 6 5 34 34 H 1.09003 * 110.51304 * 237.34902 * 21 2 1 35 35 H 1.08996 * 110.51345 * 0.05900 * 21 2 1 36 36 H 1.09007 * 110.37332 * 217.18816 * 22 21 2 37 37 H 1.09004 * 110.46702 * 94.90140 * 22 21 2 38 38 H 1.09001 * 110.37369 * 200.66214 * 24 23 22 39 39 H 1.08997 * 110.46443 * 78.36468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7435 1.8031 0.9200 5 7 1.7645 2.2402 -1.0224 6 6 2.1606 3.5812 -0.9716 7 6 2.1938 4.2510 0.2456 8 6 2.5844 5.5752 0.2965 9 6 2.9479 6.2363 -0.8611 10 6 2.9118 5.5739 -2.0814 11 8 3.2646 6.2254 -3.2189 12 6 3.0961 5.5631 -4.3812 13 1 2.6161 4.5956 -4.3867 14 6 3.5392 6.1239 -5.5693 15 7 4.1235 7.3026 -5.5627 16 14 3.2988 5.2097 -7.1805 17 1 4.4800 4.3487 -7.4421 18 1 2.0803 4.3653 -7.0934 19 1 3.1448 6.1883 -8.2867 20 6 2.5201 4.2436 -2.1360 21 6 2.0743 -0.7809 1.2171 22 6 2.8801 -1.9398 0.5895 23 8 2.3101 -2.1159 -0.7257 24 6 2.0713 -0.7796 -1.2189 25 1 -0.3634 0.5246 -0.8836 26 1 -0.3633 -1.0276 -0.0125 27 1 -0.3633 0.5030 0.8963 28 1 1.2796 1.9066 -1.7934 29 1 1.9144 3.7358 1.1527 30 1 2.6090 6.0938 1.2436 31 1 3.2570 7.2702 -0.8174 32 1 4.4337 7.6948 -6.3938 33 1 2.4944 3.7256 -3.0833 34 1 2.7244 -0.1456 1.8188 35 1 1.2535 -1.1690 1.8201 36 1 2.7604 -2.8485 1.1797 37 1 3.9344 -1.6738 0.5136 38 1 1.3300 -0.7968 -2.0179 39 1 3.0000 -0.3325 -1.5733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687412041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = -104.040581 kcal Electronic energy + Delta-G solvation = -23022.915655 eV Core-core repulsion = 19509.415062 eV Total energy + Delta-G solvation = -3513.500593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.11433 -40.77295 -39.68395 -38.09429 -35.81414 -34.63929 -34.19875 -31.25795 -30.69836 -30.04200 -27.60088 -27.30606 -24.90867 -23.77970 -23.53499 -22.43125 -20.79142 -19.69969 -19.33465 -18.47036 -17.40107 -16.95428 -16.90504 -16.62250 -16.41491 -16.04774 -15.81617 -15.68319 -15.47904 -15.00930 -14.58895 -14.41838 -14.17869 -13.62069 -13.53336 -13.35908 -13.17122 -13.15752 -12.74749 -12.64693 -12.47132 -12.29984 -12.11486 -12.04637 -11.83098 -11.46221 -11.31993 -10.84858 -10.82019 -10.71634 -9.39248 -8.90992 -8.46887 -6.15888 0.34873 0.66813 1.36401 1.43648 1.50349 1.53828 1.90019 2.17850 2.81988 2.90022 3.14883 3.21745 3.47479 3.60019 3.70563 3.86504 4.10419 4.16591 4.19414 4.30191 4.41708 4.53275 4.59758 4.62187 4.65518 4.74632 4.80713 4.84571 4.96637 5.00135 5.04793 5.10071 5.19747 5.35472 5.43590 5.63657 5.64951 5.67674 6.00724 6.13242 6.36828 6.97338 7.00091 7.76559 8.76138 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.004149 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.048510 B = 6746.953082 C = 7959.236255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C 0.525 3.475 4 O -0.549 6.549 5 N -0.657 5.657 6 C 0.185 3.815 7 C -0.200 4.200 8 C -0.051 4.051 9 C -0.214 4.214 10 C 0.135 3.865 11 O -0.226 6.226 12 C -0.414 4.414 13 H 0.104 0.896 14 C -0.021 4.021 15 N -0.920 5.920 16 Si 1.018 2.982 17 H -0.265 1.265 18 H -0.248 1.248 19 H -0.273 1.273 20 C -0.259 4.259 21 C -0.142 4.142 22 C 0.041 3.959 23 O -0.381 6.381 24 C 0.054 3.946 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.422 0.578 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.119 0.881 32 H 0.273 0.727 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.126 0.874 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 -18.055 9.813 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 C 0.313 3.687 4 O -0.426 6.426 5 N -0.303 5.303 6 C 0.091 3.909 7 C -0.220 4.220 8 C -0.070 4.070 9 C -0.234 4.234 10 C 0.083 3.917 11 O -0.132 6.132 12 C -0.490 4.490 13 H 0.122 0.878 14 C -0.219 4.219 15 N -0.558 5.558 16 Si 0.837 3.163 17 H -0.190 1.190 18 H -0.171 1.171 19 H -0.198 1.198 20 C -0.281 4.281 21 C -0.180 4.180 22 C -0.035 4.035 23 O -0.299 6.299 24 C -0.023 4.023 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.260 0.740 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.959 -17.675 10.194 21.902 hybrid contribution 0.238 0.330 -1.058 1.133 sum -7.721 -17.346 9.136 21.070 Atomic orbital electron populations 1.21871 0.88856 1.04645 1.03565 1.22203 0.99978 0.89790 0.99013 1.21001 0.78752 0.87859 0.81055 1.90688 1.38035 1.77335 1.36542 1.43465 1.56700 1.07358 1.22727 1.17454 0.96276 0.83672 0.93486 1.20839 1.09409 0.95036 0.96737 1.20924 0.95060 0.93632 0.97375 1.20491 1.11206 1.01077 0.90576 1.19605 0.92899 0.91262 0.87898 1.83989 1.74850 1.41737 1.12660 1.21818 1.40437 1.04605 0.82123 0.87849 1.26591 0.95397 0.97140 1.02786 1.70186 1.38785 1.17422 1.29363 0.84600 0.79717 0.77525 0.74488 1.19039 1.17149 1.19784 1.20850 1.12933 0.95536 0.98750 1.23060 1.01609 0.96654 0.96641 1.23594 0.96687 0.99743 0.83477 1.89121 1.83062 1.25560 1.32191 1.23593 1.00886 0.82397 0.95399 0.90573 0.89023 0.91637 0.73969 0.85189 0.82826 0.86280 0.91828 0.85193 0.89882 0.87810 0.86451 0.92710 0.85583 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.22 71.98 0.59 -1.10 16 2 C -0.11 -1.92 0.89 -51.91 -0.05 -1.96 16 3 C 0.52 13.79 6.13 87.66 0.54 14.33 16 4 O -0.55 -18.51 13.00 -3.06 -0.04 -18.55 16 5 N -0.66 -17.75 5.20 -303.54 -1.58 -19.33 16 6 C 0.19 6.69 6.27 38.14 0.24 6.93 16 7 C -0.20 -7.13 8.66 22.43 0.19 -6.94 16 8 C -0.05 -1.83 10.03 22.23 0.22 -1.61 16 9 C -0.21 -9.17 9.99 22.41 0.22 -8.95 16 10 C 0.13 6.64 6.64 22.56 0.15 6.79 16 11 O -0.23 -13.37 9.76 -22.76 -0.22 -13.59 16 12 C -0.41 -23.41 9.44 67.92 0.64 -22.77 16 13 H 0.10 5.26 5.30 -2.91 -0.02 5.25 16 14 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 15 N -0.92 -55.67 13.67 21.61 0.30 -55.38 16 16 Si 1.02 41.48 29.55 68.60 2.03 43.51 16 17 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 C -0.26 -11.04 9.05 22.51 0.20 -10.84 16 21 C -0.14 -2.44 6.32 31.61 0.20 -2.24 16 22 C 0.04 0.68 7.63 72.48 0.55 1.23 16 23 O -0.38 -7.48 11.65 -148.98 -1.74 -9.22 16 24 C 0.05 0.95 6.60 72.49 0.48 1.43 16 25 H 0.08 0.82 7.86 -2.39 -0.02 0.80 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.42 8.64 8.48 -92.71 -0.79 7.85 16 29 H 0.13 4.41 6.44 -2.91 -0.02 4.39 16 30 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 32 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.13 5.42 5.71 -2.91 -0.02 5.40 16 34 H 0.08 1.80 6.51 -2.39 -0.02 1.79 16 35 H 0.10 1.34 7.74 -2.39 -0.02 1.32 16 36 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 1.57 7.87 -2.39 -0.02 1.55 16 39 H 0.05 1.07 7.86 -2.39 -0.02 1.05 16 Total: -1.00 -73.85 326.27 3.70 -70.15 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.30 Total: 28.82 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 4.66 Total: -26.41 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.28 Total: -74.71 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.00 Total: -41.36 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.85 3.70 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687412041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.888 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds