Wall clock time and date at job start Tue Mar 31 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 C 1.52991 * 109.47170 * 120.00058 * 2 1 3 5 5 H 1.09001 * 109.47260 * 296.82990 * 4 2 1 6 6 O 1.45197 * 109.47239 * 56.82852 * 4 2 1 7 7 C 1.34805 * 117.00407 * 210.00140 * 6 4 2 8 8 O 1.21533 * 119.99662 * 359.97438 * 7 6 4 9 9 C 1.47287 * 120.00289 * 179.97438 * 7 6 4 10 10 C 1.39288 * 120.29102 * 3.46966 * 9 7 6 11 11 C 1.38200 * 120.09125 * 179.97438 * 10 9 7 12 12 C 1.38843 * 120.67791 * 0.02694 * 11 10 9 13 13 C 1.37586 * 120.58580 * 359.97226 * 12 11 10 14 14 C 1.40717 * 119.88718 * 359.74825 * 13 12 11 15 15 C 1.40859 * 120.33063 * 180.25364 * 14 13 12 16 16 H 1.08002 * 119.99953 * 215.16012 * 15 14 13 17 17 C 1.40293 * 120.00430 * 35.16037 * 15 14 13 18 18 N 1.30615 * 119.99979 * 7.40196 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 187.41013 * 17 15 14 20 20 H 1.48503 * 109.46906 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47382 * 119.99952 * 19 17 15 22 22 H 1.48501 * 109.46701 * 239.99572 * 19 17 15 23 23 C 1.50703 * 109.47063 * 176.82914 * 4 2 1 24 24 N 1.34781 * 119.99610 * 251.17373 * 23 4 2 25 25 O 1.21275 * 120.00181 * 71.17351 * 23 4 2 26 26 H 1.09002 * 109.47112 * 60.00258 * 1 2 3 27 27 H 1.08996 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46997 * 300.00014 * 1 2 3 29 29 H 1.08997 * 109.47007 * 240.00504 * 2 1 3 30 30 H 1.08997 * 109.46763 * 181.64053 * 3 2 1 31 31 H 1.09002 * 109.47086 * 301.63552 * 3 2 1 32 32 H 1.08996 * 109.47094 * 61.63332 * 3 2 1 33 33 H 1.08006 * 119.95248 * 359.97438 * 10 9 7 34 34 H 1.07997 * 119.66046 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.70259 * 179.97438 * 12 11 10 36 36 H 1.07997 * 120.06239 * 180.02562 * 13 12 11 37 37 H 0.96999 * 120.00104 * 180.02562 * 18 17 15 38 38 H 0.96999 * 120.00044 * 4.71143 * 24 23 4 39 39 H 0.96998 * 119.99495 * 184.71978 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7239 -0.1756 2.1383 6 8 1.4952 -2.0665 1.2876 7 6 1.2974 -2.6122 2.5043 8 8 1.5732 -1.9809 3.5055 9 6 0.7470 -3.9734 2.6203 10 6 0.4963 -4.7296 1.4778 11 6 -0.0197 -6.0067 1.5915 12 6 -0.2947 -6.5512 2.8387 13 6 -0.0578 -5.8289 3.9856 14 6 0.4728 -4.5285 3.8982 15 6 0.7240 -3.7828 5.0666 16 1 0.5757 -2.7130 5.0667 17 6 1.1667 -4.4297 6.2301 18 7 1.4846 -5.6960 6.1926 19 14 1.3016 -3.4799 7.8330 20 1 0.8860 -2.0717 7.6104 21 1 0.4190 -4.1017 8.8526 22 1 2.7075 -3.5112 8.3100 23 6 3.5450 -0.7896 1.2105 24 7 4.1605 -1.9680 0.9889 25 8 4.2023 0.2156 1.3787 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.1296 1.4426 -0.0294 31 1 1.6529 1.9648 -0.8750 32 1 1.7008 1.9478 0.9042 33 1 0.7055 -4.3174 0.5016 34 1 -0.2110 -6.5870 0.7010 35 1 -0.6981 -7.5505 2.9092 36 1 -0.2744 -6.2609 4.9514 37 1 1.7903 -6.1433 6.9971 38 1 3.6361 -2.7586 0.7866 39 1 5.1278 -2.0255 1.0318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725919796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:12 Heat of formation + Delta-G solvation = -121.746538 kcal Electronic energy + Delta-G solvation = -23703.461658 eV Core-core repulsion = 20189.193277 eV Total energy + Delta-G solvation = -3514.268381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30594 -38.80826 -37.35496 -35.95594 -34.66047 -33.81735 -33.25919 -30.25393 -29.75778 -27.55961 -26.98735 -25.58836 -22.84275 -21.44057 -21.10888 -19.91970 -19.78022 -17.77611 -17.53842 -17.11821 -16.35122 -15.71440 -15.40025 -14.92983 -14.58611 -14.44785 -14.25244 -13.60421 -13.42478 -13.17318 -12.83935 -12.63849 -12.51155 -12.11617 -11.96207 -11.74600 -11.48789 -11.26213 -11.24762 -11.01776 -10.79976 -10.72829 -10.69806 -10.61960 -10.26244 -9.81521 -9.55036 -9.44953 -9.36557 -8.91374 -7.76618 -7.52888 -6.96844 -4.59558 2.07297 2.69820 2.71568 3.02479 3.10786 3.13130 3.25505 3.60185 3.82441 3.86186 4.51330 4.79486 4.88175 5.04536 5.29591 5.42733 5.47917 5.63041 5.69470 5.89763 5.94101 5.98426 6.01971 6.10935 6.23500 6.32203 6.39757 6.47242 6.81043 6.90909 6.94209 7.04079 7.12981 7.33860 7.49273 7.51181 7.79362 7.84048 8.03126 8.36407 8.47566 8.61342 8.68006 8.92736 9.97275 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.005707 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.687794 B = 4904.808750 C = 5882.218159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.077 3.923 5 H 0.114 0.886 6 O -0.360 6.360 7 C 0.500 3.500 8 O -0.507 6.507 9 C -0.250 4.250 10 C -0.039 4.039 11 C -0.245 4.245 12 C -0.090 4.090 13 C -0.145 4.145 14 C 0.147 3.853 15 C -0.415 4.415 16 H 0.107 0.893 17 C 0.070 3.930 18 N -0.785 5.785 19 Si 0.917 3.083 20 H -0.255 1.255 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.517 3.483 24 N -0.844 5.844 25 O -0.545 6.545 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.285 0.715 38 H 0.408 0.592 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 3.921 -8.636 9.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.209 4.209 4 C 0.018 3.982 5 H 0.132 0.868 6 O -0.279 6.279 7 C 0.350 3.650 8 O -0.397 6.397 9 C -0.253 4.253 10 C -0.057 4.057 11 C -0.264 4.264 12 C -0.109 4.109 13 C -0.164 4.164 14 C 0.143 3.857 15 C -0.443 4.443 16 H 0.124 0.876 17 C -0.150 4.150 18 N -0.410 5.410 19 Si 0.741 3.259 20 H -0.179 1.179 21 H -0.196 1.196 22 H -0.197 1.197 23 C 0.302 3.698 24 N -0.408 5.408 25 O -0.423 6.423 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.239 0.761 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.013 4.683 -8.051 9.314 hybrid contribution 0.432 -0.257 0.771 0.921 sum 0.419 4.426 -7.279 8.530 Atomic orbital electron populations 1.21792 0.93613 1.03050 1.01801 1.21044 0.97233 0.96081 0.95513 1.21933 1.02828 0.94152 1.01984 1.22812 0.88964 0.84263 1.02185 0.86819 1.86679 1.76789 1.29310 1.35161 1.21540 0.75917 0.87653 0.79876 1.90770 1.49784 1.62543 1.36611 1.18694 1.19446 0.92274 0.94916 1.20817 0.95106 0.93646 0.96173 1.20373 1.12859 0.96936 0.96260 1.20875 0.98945 0.97888 0.93224 1.21339 1.02133 0.95688 0.97279 1.17467 0.86334 0.91313 0.90583 1.20294 1.33615 0.97301 0.93056 0.87566 1.26156 0.92931 0.94769 1.01126 1.69695 1.29831 1.10622 1.30816 0.86083 0.78830 0.81160 0.79812 1.17879 1.19628 1.19705 1.20840 0.90813 0.83414 0.74779 1.43821 1.11328 1.12106 1.73528 1.90700 1.66670 1.34758 1.50128 0.92302 0.91313 0.92523 0.90219 0.90879 0.92192 0.92249 0.87892 0.88749 0.88811 0.86197 0.90432 0.76144 0.77069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.02 37.16 0.34 -1.42 16 2 C -0.08 -1.04 2.70 -90.62 -0.24 -1.28 16 3 C -0.15 -1.86 8.74 37.16 0.32 -1.54 16 4 C 0.08 1.26 2.04 -27.89 -0.06 1.20 16 5 H 0.11 2.08 7.16 -51.93 -0.37 1.71 16 6 O -0.36 -6.41 7.13 -40.78 -0.29 -6.70 16 7 C 0.50 11.00 7.82 34.41 0.27 11.27 16 8 O -0.51 -12.58 12.82 -19.29 -0.25 -12.82 16 9 C -0.25 -5.81 5.92 -104.39 -0.62 -6.42 16 10 C -0.04 -0.79 9.60 -39.20 -0.38 -1.17 16 11 C -0.25 -4.90 10.03 -39.37 -0.39 -5.29 16 12 C -0.09 -1.91 10.01 -39.60 -0.40 -2.31 16 13 C -0.15 -3.48 8.62 -38.88 -0.34 -3.81 16 14 C 0.15 3.73 5.50 -106.53 -0.59 3.14 16 15 C -0.42 -10.84 7.68 -37.82 -0.29 -11.13 16 16 H 0.11 2.88 5.89 -52.49 -0.31 2.57 16 17 C 0.07 1.71 5.28 -17.30 -0.09 1.62 16 18 N -0.78 -19.34 11.12 55.57 0.62 -18.72 16 19 Si 0.92 18.94 29.57 -169.99 -5.03 13.91 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C 0.52 8.76 7.20 -10.98 -0.08 8.68 16 24 N -0.84 -12.07 8.79 31.22 0.27 -11.79 16 25 O -0.54 -10.40 15.74 5.56 0.09 -10.31 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.01 6.10 -51.93 -0.32 0.70 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.81 7.61 -52.48 -0.40 1.41 16 34 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.93 6.61 -52.49 -0.35 2.59 16 37 H 0.28 6.34 8.29 -40.82 -0.34 6.01 16 38 H 0.41 5.59 7.73 -40.82 -0.32 5.28 16 39 H 0.40 4.90 8.93 -40.82 -0.36 4.54 16 LS Contribution 329.39 15.07 4.96 4.96 Total: -1.00 -28.70 329.39 -7.07 -35.77 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -4.91 Total: 14.17 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.54 Total: -8.47 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.89 Total: -30.51 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.45 Total: -29.84 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.70 -7.07 -35.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725919796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.977 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds