Wall clock time and date at job start Tue Mar 31 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 C 1.52991 * 109.47170 * 120.00058 * 2 1 3 5 5 H 1.09001 * 109.47260 * 296.82990 * 4 2 1 6 6 O 1.45197 * 109.47239 * 56.82852 * 4 2 1 7 7 C 1.34805 * 117.00407 * 210.00140 * 6 4 2 8 8 O 1.21533 * 119.99662 * 359.97438 * 7 6 4 9 9 C 1.47287 * 120.00289 * 179.97438 * 7 6 4 10 10 C 1.39288 * 120.29102 * 3.46966 * 9 7 6 11 11 C 1.38200 * 120.09125 * 179.97438 * 10 9 7 12 12 C 1.38843 * 120.67791 * 0.02694 * 11 10 9 13 13 C 1.37586 * 120.58580 * 359.97226 * 12 11 10 14 14 C 1.40717 * 119.88718 * 359.74825 * 13 12 11 15 15 C 1.40859 * 120.33063 * 180.25364 * 14 13 12 16 16 H 1.08002 * 119.99953 * 215.16012 * 15 14 13 17 17 C 1.40293 * 120.00430 * 35.16037 * 15 14 13 18 18 N 1.30615 * 119.99979 * 7.40196 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 187.41013 * 17 15 14 20 20 H 1.48503 * 109.46906 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47382 * 119.99952 * 19 17 15 22 22 H 1.48501 * 109.46701 * 239.99572 * 19 17 15 23 23 C 1.50703 * 109.47063 * 176.82914 * 4 2 1 24 24 N 1.34781 * 119.99610 * 251.17373 * 23 4 2 25 25 O 1.21275 * 120.00181 * 71.17351 * 23 4 2 26 26 H 1.09002 * 109.47112 * 60.00258 * 1 2 3 27 27 H 1.08996 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46997 * 300.00014 * 1 2 3 29 29 H 1.08997 * 109.47007 * 240.00504 * 2 1 3 30 30 H 1.08997 * 109.46763 * 181.64053 * 3 2 1 31 31 H 1.09002 * 109.47086 * 301.63552 * 3 2 1 32 32 H 1.08996 * 109.47094 * 61.63332 * 3 2 1 33 33 H 1.08006 * 119.95248 * 359.97438 * 10 9 7 34 34 H 1.07997 * 119.66046 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.70259 * 179.97438 * 12 11 10 36 36 H 1.07997 * 120.06239 * 180.02562 * 13 12 11 37 37 H 0.96999 * 120.00104 * 180.02562 * 18 17 15 38 38 H 0.96999 * 120.00044 * 4.71143 * 24 23 4 39 39 H 0.96998 * 119.99495 * 184.71978 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7239 -0.1756 2.1383 6 8 1.4952 -2.0665 1.2876 7 6 1.2974 -2.6122 2.5043 8 8 1.5732 -1.9809 3.5055 9 6 0.7470 -3.9734 2.6203 10 6 0.4963 -4.7296 1.4778 11 6 -0.0197 -6.0067 1.5915 12 6 -0.2947 -6.5512 2.8387 13 6 -0.0578 -5.8289 3.9856 14 6 0.4728 -4.5285 3.8982 15 6 0.7240 -3.7828 5.0666 16 1 0.5757 -2.7130 5.0667 17 6 1.1667 -4.4297 6.2301 18 7 1.4846 -5.6960 6.1926 19 14 1.3016 -3.4799 7.8330 20 1 0.8860 -2.0717 7.6104 21 1 0.4190 -4.1017 8.8526 22 1 2.7075 -3.5112 8.3100 23 6 3.5450 -0.7896 1.2105 24 7 4.1605 -1.9680 0.9889 25 8 4.2023 0.2156 1.3787 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.1296 1.4426 -0.0294 31 1 1.6529 1.9648 -0.8750 32 1 1.7008 1.9478 0.9042 33 1 0.7055 -4.3174 0.5016 34 1 -0.2110 -6.5870 0.7010 35 1 -0.6981 -7.5505 2.9092 36 1 -0.2744 -6.2609 4.9514 37 1 1.7903 -6.1433 6.9971 38 1 3.6361 -2.7586 0.7866 39 1 5.1278 -2.0255 1.0318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725919796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:11 Heat of formation + Delta-G solvation = -139.103796 kcal Electronic energy + Delta-G solvation = -23704.214325 eV Core-core repulsion = 20189.193277 eV Total energy + Delta-G solvation = -3515.021048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80778 -40.36901 -39.01389 -37.49846 -35.98363 -35.55332 -34.59447 -31.99285 -31.49414 -28.86690 -28.03037 -27.34303 -24.53761 -22.96008 -22.56413 -21.42148 -21.15575 -19.39857 -19.03194 -18.70226 -17.87569 -17.22355 -17.04792 -16.38192 -16.06344 -15.95597 -15.71420 -15.21120 -14.90965 -14.54025 -14.50185 -14.15993 -13.70021 -13.57545 -13.31588 -13.02023 -12.93784 -12.87198 -12.71929 -12.53365 -12.38580 -12.35834 -12.03043 -11.98527 -11.72287 -11.51504 -11.22030 -10.89496 -10.71935 -10.66719 -9.50238 -9.29502 -8.75409 -6.47023 0.32132 0.99591 1.32167 1.35675 1.44854 1.47058 1.71259 1.98755 2.16494 2.43138 2.71738 3.60111 3.65339 3.68246 3.91465 4.02618 4.26565 4.42504 4.45624 4.55718 4.62881 4.77523 4.86082 4.94703 4.98981 5.06764 5.10977 5.18992 5.27043 5.32136 5.41736 5.45528 5.61000 5.73838 5.81251 6.01441 6.08961 6.21984 6.29130 6.63278 6.77700 6.87262 7.08633 7.21161 8.21165 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.005707 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.687794 B = 4904.808750 C = 5882.218159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.147 4.147 4 C 0.074 3.926 5 H 0.091 0.909 6 O -0.340 6.340 7 C 0.505 3.495 8 O -0.541 6.541 9 C -0.267 4.267 10 C -0.035 4.035 11 C -0.234 4.234 12 C -0.083 4.083 13 C -0.174 4.174 14 C 0.121 3.879 15 C -0.455 4.455 16 H 0.083 0.917 17 C 0.036 3.964 18 N -0.812 5.812 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.252 1.252 22 H -0.268 1.268 23 C 0.512 3.488 24 N -0.831 5.831 25 O -0.570 6.570 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.292 0.708 38 H 0.413 0.587 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 3.332 -11.022 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C -0.204 4.204 4 C 0.016 3.984 5 H 0.109 0.891 6 O -0.258 6.258 7 C 0.357 3.643 8 O -0.433 6.433 9 C -0.270 4.270 10 C -0.054 4.054 11 C -0.253 4.253 12 C -0.102 4.102 13 C -0.193 4.193 14 C 0.117 3.883 15 C -0.484 4.484 16 H 0.101 0.899 17 C -0.180 4.180 18 N -0.438 5.438 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.176 1.176 22 H -0.193 1.193 23 C 0.296 3.704 24 N -0.395 5.395 25 O -0.450 6.450 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.244 0.756 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.387 4.054 -10.469 11.233 hybrid contribution 0.537 -0.100 1.279 1.391 sum 0.150 3.954 -9.190 10.005 Atomic orbital electron populations 1.21792 0.92663 1.02715 1.02833 1.21136 0.97914 0.96177 0.94065 1.21900 1.01729 0.93776 1.03013 1.23049 0.89010 0.83135 1.03246 0.89127 1.86639 1.76348 1.30168 1.32640 1.21479 0.75095 0.87383 0.80384 1.90765 1.51001 1.63379 1.38144 1.19008 1.19502 0.93146 0.95360 1.21181 0.93953 0.93638 0.96585 1.20868 1.10494 0.96787 0.97132 1.21264 0.97269 0.98826 0.92818 1.21284 1.04133 0.95968 0.97884 1.17810 0.86743 0.92309 0.91424 1.20227 1.36833 0.96401 0.94896 0.89890 1.26737 0.92371 0.95612 1.03284 1.69705 1.30889 1.11397 1.31814 0.85271 0.79120 0.79137 0.76946 1.19442 1.17572 1.19255 1.20922 0.90960 0.83730 0.74743 1.43724 1.12101 1.11406 1.72298 1.90692 1.67071 1.35706 1.51518 0.89380 0.92289 0.93449 0.88439 0.92557 0.89202 0.93059 0.84492 0.84664 0.85846 0.87791 0.89694 0.75562 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.02 71.98 0.65 -2.49 16 2 C -0.07 -1.79 2.70 -10.79 -0.03 -1.81 16 3 C -0.15 -3.36 8.74 71.98 0.63 -2.73 16 4 C 0.07 2.41 2.04 29.85 0.06 2.47 16 5 H 0.09 3.42 7.16 -2.39 -0.02 3.40 16 6 O -0.34 -11.77 7.13 -57.16 -0.41 -12.18 16 7 C 0.51 22.46 7.82 70.20 0.55 23.01 16 8 O -0.54 -27.90 12.82 19.73 0.25 -27.65 16 9 C -0.27 -12.34 5.92 -19.71 -0.12 -12.46 16 10 C -0.04 -1.34 9.60 22.51 0.22 -1.13 16 11 C -0.23 -8.44 10.03 22.41 0.22 -8.22 16 12 C -0.08 -3.33 10.01 22.26 0.22 -3.11 16 13 C -0.17 -8.38 8.62 22.72 0.20 -8.18 16 14 C 0.12 6.27 5.50 -21.10 -0.12 6.16 16 15 C -0.46 -24.96 7.68 23.41 0.18 -24.78 16 16 H 0.08 4.80 5.89 -2.91 -0.02 4.79 16 17 C 0.04 1.85 5.28 85.37 0.45 2.30 16 18 N -0.81 -41.21 11.12 21.88 0.24 -40.97 16 19 Si 0.97 40.24 29.57 68.60 2.03 42.26 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 23 C 0.51 17.11 7.20 87.66 0.63 17.74 16 24 N -0.83 -22.85 8.79 -173.53 -1.53 -24.37 16 25 O -0.57 -21.77 15.74 -3.01 -0.05 -21.82 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.41 7.60 -2.39 -0.02 1.40 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.50 6.10 -2.39 -0.01 1.49 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.14 4.21 7.61 -2.91 -0.02 4.19 16 34 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.10 5.26 6.61 -2.91 -0.02 5.24 16 37 H 0.29 13.32 8.29 -92.71 -0.77 12.56 16 38 H 0.41 10.63 7.73 -92.71 -0.72 9.92 16 39 H 0.41 9.61 8.93 -92.71 -0.83 8.78 16 Total: -1.00 -64.59 329.39 3.85 -60.74 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.44 Total: 37.22 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 3.75 Total: -13.24 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -1.28 Total: -65.34 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -0.20 Total: -61.64 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -64.59 3.85 -60.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725919796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.363 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds