Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46804 * 2 1 4 4 C 1.52997 * 109.46964 * 120.00246 * 2 1 3 5 5 H 1.09002 * 109.47548 * 59.99987 * 4 2 1 6 6 O 1.45201 * 109.47357 * 299.99809 * 4 2 1 7 7 C 1.34804 * 116.99925 * 89.99874 * 6 4 2 8 8 O 1.21528 * 120.00367 * 0.02562 * 7 6 4 9 9 C 1.47288 * 120.00213 * 180.02562 * 7 6 4 10 10 C 1.39299 * 120.28703 * 354.53961 * 9 7 6 11 11 C 1.38203 * 120.08477 * 180.27297 * 10 9 7 12 12 C 1.38837 * 120.68062 * 359.72529 * 11 10 9 13 13 C 1.37594 * 120.58972 * 359.97438 * 12 11 10 14 14 C 1.40716 * 119.88397 * 359.97438 * 13 12 11 15 15 C 1.40852 * 120.33226 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00230 * 145.48804 * 15 14 13 17 17 C 1.40302 * 119.99992 * 325.48754 * 15 14 13 18 18 N 1.30615 * 119.99938 * 339.92119 * 17 15 14 19 19 Si 1.86801 * 119.99787 * 159.92367 * 17 15 14 20 20 H 1.48498 * 109.46717 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47156 * 299.99673 * 19 17 15 22 22 H 1.48503 * 109.47035 * 60.00128 * 19 17 15 23 23 C 1.50705 * 109.47146 * 180.02562 * 4 2 1 24 24 N 1.34772 * 119.99862 * 300.00225 * 23 4 2 25 25 O 1.21278 * 119.99706 * 119.99402 * 23 4 2 26 26 H 1.09002 * 109.46810 * 299.99539 * 1 2 3 27 27 H 1.08993 * 109.46923 * 59.99650 * 1 2 3 28 28 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 239.99939 * 2 1 3 30 30 H 1.09001 * 109.47401 * 60.00197 * 3 2 1 31 31 H 1.08997 * 109.46906 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47666 * 299.99895 * 3 2 1 33 33 H 1.08000 * 119.95893 * 0.02562 * 10 9 7 34 34 H 1.07999 * 119.65495 * 179.73607 * 11 10 9 35 35 H 1.08005 * 119.70455 * 180.02562 * 12 11 10 36 36 H 1.07995 * 120.06192 * 180.02562 * 13 12 11 37 37 H 0.97003 * 120.00015 * 354.66559 * 18 17 15 38 38 H 0.97007 * 120.00112 * 359.97438 * 24 23 4 39 39 H 0.97000 * 120.00061 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2492 6 8 1.5561 -0.0369 2.4348 7 6 0.3714 -0.4418 2.9345 8 8 -0.2401 -1.3425 2.3943 9 6 -0.1821 0.2073 4.1351 10 6 0.5631 1.1607 4.8251 11 6 0.0419 1.7631 5.9544 12 6 -1.2267 1.4331 6.4119 13 6 -1.9894 0.4997 5.7484 14 6 -1.4830 -0.1279 4.5953 15 6 -2.2559 -1.0844 3.9084 16 1 -2.1916 -1.1593 2.8329 17 6 -3.1093 -1.9399 4.6214 18 7 -2.9184 -2.1370 5.8984 19 14 -4.5185 -2.7968 3.7444 20 1 -5.2650 -3.6393 4.7129 21 1 -5.4323 -1.7799 3.1647 22 1 -3.9778 -3.6531 2.6581 23 6 3.5471 -0.7208 1.2496 24 7 4.2214 -1.3039 0.2388 25 8 4.1530 -0.1955 2.1594 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.5511 1.4266 4.4793 34 1 0.6275 2.4983 6.4864 35 1 -1.6187 1.9139 7.2960 36 1 -2.9753 0.2497 6.1116 37 1 -2.1426 -1.7546 6.3376 38 1 3.7367 -1.7243 -0.4888 39 1 5.1914 -1.3039 0.2392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725919818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -122.290290 kcal Electronic energy + Delta-G solvation = -23908.873481 eV Core-core repulsion = 20394.581521 eV Total energy + Delta-G solvation = -3514.291960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.36437 -38.91883 -37.49922 -35.76252 -34.64584 -33.94000 -33.38898 -30.21422 -29.46063 -27.71586 -27.00699 -25.36610 -22.92001 -21.49597 -21.13000 -20.26221 -19.27313 -18.10406 -17.75508 -17.00796 -16.45025 -15.83040 -15.46421 -14.76510 -14.62949 -14.30947 -14.05076 -13.92938 -13.61477 -13.24839 -12.91776 -12.66855 -12.32439 -12.10348 -11.93813 -11.80329 -11.43288 -11.21812 -11.06259 -10.98122 -10.80121 -10.67507 -10.44107 -10.25956 -10.03764 -9.79367 -9.78413 -9.55822 -9.15189 -8.90667 -7.85951 -7.68177 -7.27110 -4.58396 2.07933 2.59925 2.71823 2.95784 3.13880 3.24977 3.34013 3.73839 3.89436 3.96320 4.53121 4.69945 4.75710 4.98795 5.11412 5.36530 5.45942 5.59271 5.78494 5.89600 5.99328 6.04796 6.07269 6.12144 6.20087 6.38169 6.46320 6.58015 6.67211 6.74006 6.91804 7.11197 7.21296 7.30394 7.47452 7.55306 7.72176 7.80079 8.04403 8.12695 8.20712 8.59942 8.71994 8.97893 9.93507 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.005710 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.995366 B = 4902.396735 C = 5860.850081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.147 4.147 4 C 0.074 3.926 5 H 0.107 0.893 6 O -0.336 6.336 7 C 0.505 3.495 8 O -0.510 6.510 9 C -0.253 4.253 10 C -0.022 4.022 11 C -0.260 4.260 12 C -0.069 4.069 13 C -0.202 4.202 14 C 0.123 3.877 15 C -0.465 4.465 16 H 0.104 0.896 17 C 0.032 3.968 18 N -0.785 5.785 19 Si 1.070 2.930 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.272 1.272 23 C 0.524 3.476 24 N -0.854 5.854 25 O -0.520 6.520 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.300 0.700 38 H 0.401 0.599 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 1.133 -11.208 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.204 4.204 4 C 0.014 3.986 5 H 0.124 0.876 6 O -0.254 6.254 7 C 0.356 3.644 8 O -0.401 6.401 9 C -0.256 4.256 10 C -0.040 4.040 11 C -0.279 4.279 12 C -0.088 4.088 13 C -0.221 4.221 14 C 0.119 3.881 15 C -0.492 4.492 16 H 0.122 0.878 17 C -0.190 4.190 18 N -0.408 5.408 19 Si 0.892 3.108 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.198 1.198 23 C 0.308 3.692 24 N -0.421 5.421 25 O -0.394 6.394 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.229 0.771 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.143 0.244 -10.379 11.586 hybrid contribution 1.649 0.742 -0.582 1.900 sum 6.792 0.986 -10.962 12.933 Atomic orbital electron populations 1.21917 0.93054 1.03258 1.02105 1.21487 0.98040 0.97262 0.95225 1.21821 1.00448 0.95484 1.02659 1.22284 0.90400 0.99463 0.86422 0.87568 1.86742 1.38780 1.59046 1.40799 1.21366 0.77556 0.81489 0.84028 1.90727 1.59093 1.30188 1.60106 1.18647 0.96603 1.10098 1.00227 1.20982 0.97206 0.92568 0.93266 1.20346 0.98111 1.07958 1.01469 1.20814 0.94316 0.96264 0.97414 1.21195 0.99932 1.00940 0.99991 1.17454 0.88738 0.91399 0.90489 1.21149 1.16741 1.12788 0.98478 0.87809 1.27287 1.00721 0.96069 0.94956 1.70375 1.27045 1.32755 1.10639 0.83569 0.74527 0.76809 0.75859 1.19807 1.19838 1.19757 1.20333 0.89644 0.77463 0.81751 1.43732 1.10873 1.61474 1.26017 1.90769 1.70051 1.43366 1.35171 0.91898 0.92755 0.91275 0.90100 0.91314 0.93032 0.92441 0.87553 0.88547 0.88637 0.87332 0.88631 0.77058 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.80 37.16 0.29 -1.92 16 2 C -0.10 -1.33 2.72 -90.62 -0.25 -1.58 16 3 C -0.15 -1.92 8.80 37.16 0.33 -1.60 16 4 C 0.07 1.20 2.41 -27.88 -0.07 1.13 16 5 H 0.11 1.73 7.16 -51.93 -0.37 1.36 16 6 O -0.34 -6.96 7.87 -47.46 -0.37 -7.34 16 7 C 0.50 11.83 6.11 34.41 0.21 12.04 16 8 O -0.51 -12.39 10.79 -19.29 -0.21 -12.60 16 9 C -0.25 -6.31 5.92 -104.38 -0.62 -6.93 16 10 C -0.02 -0.50 9.60 -39.20 -0.38 -0.88 16 11 C -0.26 -5.66 10.03 -39.37 -0.39 -6.05 16 12 C -0.07 -1.53 10.01 -39.60 -0.40 -1.93 16 13 C -0.20 -4.95 7.91 -38.88 -0.31 -5.25 16 14 C 0.12 3.22 5.15 -106.53 -0.55 2.67 16 15 C -0.47 -12.26 7.60 -37.82 -0.29 -12.55 16 16 H 0.10 2.79 6.02 -52.49 -0.32 2.47 16 17 C 0.03 0.81 5.02 -17.29 -0.09 0.72 16 18 N -0.79 -20.49 12.59 55.57 0.70 -19.79 16 19 Si 1.07 21.55 29.98 -169.99 -5.10 16.45 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 C 0.52 7.86 6.24 -10.99 -0.07 7.80 16 24 N -0.85 -7.87 8.77 31.22 0.27 -7.60 16 25 O -0.52 -10.14 17.34 -14.12 -0.24 -10.39 16 26 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.10 7.50 -51.93 -0.39 0.71 16 29 H 0.08 0.78 7.57 -51.93 -0.39 0.39 16 30 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 31 H 0.05 0.65 7.21 -51.93 -0.37 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 2.31 7.61 -52.49 -0.40 1.91 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.11 2.68 7.00 -52.49 -0.37 2.32 16 37 H 0.30 8.06 6.65 -40.82 -0.27 7.78 16 38 H 0.40 2.46 8.25 -40.82 -0.34 2.12 16 39 H 0.40 3.07 8.93 -40.82 -0.36 2.70 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -31.22 324.12 -7.43 -38.64 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -4.79 Total: 12.05 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.57 Total: -14.32 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.97 Total: -27.39 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.83 Total: -30.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.10 Total: 16.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.22 -7.43 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725919818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.649 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds