Wall clock time and date at job start Tue Mar 31 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46804 * 2 1 4 4 C 1.52997 * 109.46964 * 120.00246 * 2 1 3 5 5 H 1.09002 * 109.47548 * 59.99987 * 4 2 1 6 6 O 1.45201 * 109.47357 * 299.99809 * 4 2 1 7 7 C 1.34804 * 116.99925 * 89.99874 * 6 4 2 8 8 O 1.21528 * 120.00367 * 0.02562 * 7 6 4 9 9 C 1.47288 * 120.00213 * 180.02562 * 7 6 4 10 10 C 1.39299 * 120.28703 * 354.53961 * 9 7 6 11 11 C 1.38203 * 120.08477 * 180.27297 * 10 9 7 12 12 C 1.38837 * 120.68062 * 359.72529 * 11 10 9 13 13 C 1.37594 * 120.58972 * 359.97438 * 12 11 10 14 14 C 1.40716 * 119.88397 * 359.97438 * 13 12 11 15 15 C 1.40852 * 120.33226 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00230 * 145.48804 * 15 14 13 17 17 C 1.40302 * 119.99992 * 325.48754 * 15 14 13 18 18 N 1.30615 * 119.99938 * 339.92119 * 17 15 14 19 19 Si 1.86801 * 119.99787 * 159.92367 * 17 15 14 20 20 H 1.48498 * 109.46717 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47156 * 299.99673 * 19 17 15 22 22 H 1.48503 * 109.47035 * 60.00128 * 19 17 15 23 23 C 1.50705 * 109.47146 * 180.02562 * 4 2 1 24 24 N 1.34772 * 119.99862 * 300.00225 * 23 4 2 25 25 O 1.21278 * 119.99706 * 119.99402 * 23 4 2 26 26 H 1.09002 * 109.46810 * 299.99539 * 1 2 3 27 27 H 1.08993 * 109.46923 * 59.99650 * 1 2 3 28 28 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 239.99939 * 2 1 3 30 30 H 1.09001 * 109.47401 * 60.00197 * 3 2 1 31 31 H 1.08997 * 109.46906 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47666 * 299.99895 * 3 2 1 33 33 H 1.08000 * 119.95893 * 0.02562 * 10 9 7 34 34 H 1.07999 * 119.65495 * 179.73607 * 11 10 9 35 35 H 1.08005 * 119.70455 * 180.02562 * 12 11 10 36 36 H 1.07995 * 120.06192 * 180.02562 * 13 12 11 37 37 H 0.97003 * 120.00015 * 354.66559 * 18 17 15 38 38 H 0.97007 * 120.00112 * 359.97438 * 24 23 4 39 39 H 0.97000 * 120.00061 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2492 6 8 1.5561 -0.0369 2.4348 7 6 0.3714 -0.4418 2.9345 8 8 -0.2401 -1.3425 2.3943 9 6 -0.1821 0.2073 4.1351 10 6 0.5631 1.1607 4.8251 11 6 0.0419 1.7631 5.9544 12 6 -1.2267 1.4331 6.4119 13 6 -1.9894 0.4997 5.7484 14 6 -1.4830 -0.1279 4.5953 15 6 -2.2559 -1.0844 3.9084 16 1 -2.1916 -1.1593 2.8329 17 6 -3.1093 -1.9399 4.6214 18 7 -2.9184 -2.1370 5.8984 19 14 -4.5185 -2.7968 3.7444 20 1 -5.2650 -3.6393 4.7129 21 1 -5.4323 -1.7799 3.1647 22 1 -3.9778 -3.6531 2.6581 23 6 3.5471 -0.7208 1.2496 24 7 4.2214 -1.3039 0.2388 25 8 4.1530 -0.1955 2.1594 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.5511 1.4266 4.4793 34 1 0.6275 2.4983 6.4864 35 1 -1.6187 1.9139 7.2960 36 1 -2.9753 0.2497 6.1116 37 1 -2.1426 -1.7546 6.3376 38 1 3.7367 -1.7243 -0.4888 39 1 5.1914 -1.3039 0.2392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725919818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:13 Heat of formation + Delta-G solvation = -142.122890 kcal Electronic energy + Delta-G solvation = -23909.733487 eV Core-core repulsion = 20394.581521 eV Total energy + Delta-G solvation = -3515.151966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85418 -40.42808 -39.23958 -37.33539 -36.11766 -35.72194 -34.47738 -32.04511 -31.33100 -29.05183 -28.14580 -27.23725 -24.69865 -22.97824 -22.63851 -21.89376 -20.64228 -19.94081 -18.92563 -18.61174 -17.73367 -17.24204 -17.07544 -16.52836 -16.10145 -15.87819 -15.65346 -15.26308 -15.17279 -14.73993 -14.55205 -14.16263 -13.94290 -13.77560 -13.32755 -13.19321 -13.03188 -12.79419 -12.65032 -12.51692 -12.22158 -12.08436 -11.97218 -11.90622 -11.59310 -11.46169 -11.00921 -10.90668 -10.79157 -10.72616 -9.73656 -9.58304 -9.20865 -6.55515 0.21756 0.86220 1.40127 1.48560 1.58842 1.63146 1.78388 1.93351 2.29633 2.59869 2.67755 3.44341 3.55658 3.66232 3.83868 3.97161 4.23753 4.26180 4.30865 4.42631 4.50781 4.68772 4.71285 4.86713 4.86899 4.89729 4.99960 5.04825 5.28131 5.33430 5.34977 5.46909 5.59924 5.66550 5.79326 5.81992 5.90417 6.14060 6.24389 6.28575 6.68098 6.78714 7.17229 7.21360 7.96729 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.005710 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.995366 B = 4902.396735 C = 5860.850081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.061 3.939 5 H 0.104 0.896 6 O -0.344 6.344 7 C 0.508 3.492 8 O -0.526 6.526 9 C -0.277 4.277 10 C -0.031 4.031 11 C -0.248 4.248 12 C -0.063 4.063 13 C -0.221 4.221 14 C 0.102 3.898 15 C -0.499 4.499 16 H 0.089 0.911 17 C 0.001 3.999 18 N -0.806 5.806 19 Si 1.116 2.884 20 H -0.266 1.266 21 H -0.257 1.257 22 H -0.266 1.266 23 C 0.529 3.471 24 N -0.820 5.820 25 O -0.572 6.572 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.131 0.869 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.284 0.716 38 H 0.421 0.579 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 1.543 -12.895 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.200 4.200 4 C 0.002 3.998 5 H 0.121 0.879 6 O -0.261 6.261 7 C 0.359 3.641 8 O -0.418 6.418 9 C -0.280 4.280 10 C -0.049 4.049 11 C -0.267 4.267 12 C -0.081 4.081 13 C -0.240 4.240 14 C 0.098 3.902 15 C -0.525 4.525 16 H 0.107 0.893 17 C -0.216 4.216 18 N -0.429 5.429 19 Si 0.932 3.068 20 H -0.191 1.191 21 H -0.181 1.181 22 H -0.191 1.191 23 C 0.312 3.688 24 N -0.387 5.387 25 O -0.450 6.450 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.134 0.647 -12.121 13.600 hybrid contribution 1.558 0.723 -0.124 1.722 sum 7.693 1.370 -12.245 14.526 Atomic orbital electron populations 1.21853 0.94562 1.02189 1.01342 1.21578 0.96583 0.97703 0.95391 1.21784 1.00730 0.95140 1.02340 1.22767 0.91617 0.99398 0.86000 0.87861 1.86671 1.37315 1.59453 1.42709 1.21161 0.78183 0.81017 0.83715 1.90698 1.59753 1.30798 1.60563 1.19056 0.96827 1.10768 1.01342 1.21197 0.97602 0.92375 0.93741 1.20797 0.97994 1.07389 1.00529 1.21202 0.94089 0.94940 0.97875 1.21214 1.00158 1.02163 1.00428 1.17811 0.89327 0.91678 0.91343 1.21144 1.19019 1.14505 0.97873 0.89319 1.28570 1.02286 0.95849 0.94913 1.70490 1.26927 1.34124 1.11347 0.83028 0.72189 0.76409 0.75138 1.19055 1.18141 1.19059 1.20127 0.88901 0.77502 0.82238 1.43407 1.11593 1.59128 1.24617 1.90755 1.70603 1.46170 1.37459 0.96102 0.89961 0.92517 0.85165 0.94622 0.92429 0.89777 0.86505 0.84929 0.85082 0.88288 0.90359 0.74728 0.74929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 7.80 71.99 0.56 -3.65 16 2 C -0.09 -2.29 2.72 -10.79 -0.03 -2.32 16 3 C -0.14 -3.46 8.80 71.98 0.63 -2.83 16 4 C 0.06 1.94 2.41 29.85 0.07 2.01 16 5 H 0.10 3.33 7.16 -2.39 -0.02 3.31 16 6 O -0.34 -14.59 7.87 -50.76 -0.40 -14.99 16 7 C 0.51 24.76 6.11 70.20 0.43 25.19 16 8 O -0.53 -26.65 10.79 19.74 0.21 -26.44 16 9 C -0.28 -14.29 5.92 -19.71 -0.12 -14.41 16 10 C -0.03 -1.42 9.60 22.52 0.22 -1.20 16 11 C -0.25 -10.39 10.03 22.40 0.22 -10.17 16 12 C -0.06 -2.70 10.01 22.26 0.22 -2.48 16 13 C -0.22 -11.06 7.91 22.72 0.18 -10.88 16 14 C 0.10 5.55 5.15 -21.10 -0.11 5.44 16 15 C -0.50 -27.50 7.60 23.41 0.18 -27.32 16 16 H 0.09 5.04 6.02 -2.91 -0.02 5.02 16 17 C 0.00 0.03 5.02 85.38 0.43 0.46 16 18 N -0.81 -43.53 12.59 21.89 0.28 -43.25 16 19 Si 1.12 44.16 29.98 68.60 2.06 46.22 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 23 C 0.53 15.08 6.24 87.66 0.55 15.63 16 24 N -0.82 -12.55 8.77 -173.54 -1.52 -14.07 16 25 O -0.57 -22.07 17.34 15.79 0.27 -21.79 16 26 H 0.02 0.77 6.16 -2.39 -0.01 0.76 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.80 7.50 -2.39 -0.02 1.78 16 29 H 0.13 1.92 7.57 -2.39 -0.02 1.90 16 30 H 0.03 1.09 7.68 -2.39 -0.02 1.08 16 31 H 0.06 1.33 7.21 -2.39 -0.02 1.31 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.12 5.06 7.61 -2.91 -0.02 5.04 16 34 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.10 5.07 7.00 -2.91 -0.02 5.05 16 37 H 0.28 15.97 6.65 -92.71 -0.62 15.35 16 38 H 0.42 3.41 8.25 -92.70 -0.76 2.64 16 39 H 0.42 4.97 8.93 -92.71 -0.83 4.14 16 Total: -1.00 -72.33 324.12 4.00 -68.33 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.34 Total: 32.53 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.44 Total: -26.54 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -1.25 Total: -57.32 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: 0.09 Total: -63.22 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.06 Total: 46.22 kcal Total: -72.33 4.00 -68.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725919818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.792 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds