Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47136 * 2 1 4 4 C 1.53000 * 109.47045 * 239.99922 * 2 1 3 5 5 H 1.09004 * 109.46943 * 66.46275 * 4 2 1 6 6 O 1.45203 * 109.47391 * 306.46688 * 4 2 1 7 7 C 1.34698 * 117.00147 * 149.99666 * 6 4 2 8 8 O 1.21463 * 120.00341 * 0.02562 * 7 6 4 9 9 C 1.47767 * 119.99872 * 179.97438 * 7 6 4 10 10 C 1.39967 * 120.03156 * 359.72769 * 9 7 6 11 11 C 1.38317 * 120.35463 * 179.76470 * 10 9 7 12 12 C 1.37760 * 120.41558 * 0.51046 * 11 10 9 13 13 C 1.40752 * 120.05346 * 359.74441 * 12 11 10 14 14 C 1.41440 * 120.17838 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99985 * 29.27373 * 14 13 12 16 16 C 1.39935 * 120.00334 * 209.26538 * 14 13 12 17 17 N 1.30825 * 119.99823 * 10.23005 * 16 14 13 18 18 Si 1.86806 * 120.00203 * 190.22460 * 16 14 13 19 19 H 1.48502 * 109.46614 * 90.00575 * 18 16 14 20 20 H 1.48498 * 109.46847 * 210.00556 * 18 16 14 21 21 H 1.48503 * 109.46893 * 330.00341 * 18 16 14 22 22 C 1.39057 * 120.03327 * 180.02562 * 9 7 6 23 23 C 1.50703 * 109.47337 * 186.46407 * 4 2 1 24 24 N 1.34778 * 119.99641 * 108.91484 * 23 4 2 25 25 O 1.21278 * 119.99543 * 288.91920 * 23 4 2 26 26 H 1.08997 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47007 * 299.99856 * 1 2 3 28 28 H 1.08999 * 109.47213 * 59.99732 * 1 2 3 29 29 H 1.08999 * 109.47213 * 120.00268 * 2 1 3 30 30 H 1.08993 * 109.47255 * 295.96068 * 3 2 1 31 31 H 1.08995 * 109.47285 * 55.96655 * 3 2 1 32 32 H 1.09003 * 109.46490 * 175.96188 * 3 2 1 33 33 H 1.07997 * 119.82390 * 359.97438 * 10 9 7 34 34 H 1.07994 * 119.79417 * 180.26024 * 11 10 9 35 35 H 1.08001 * 119.97397 * 179.76830 * 12 11 10 36 36 H 0.97001 * 120.00261 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.19987 * 359.95355 * 22 9 7 38 38 H 0.96992 * 120.00232 * 355.77861 * 24 23 4 39 39 H 0.96998 * 119.99130 * 175.77700 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.7742 -0.1450 -2.1355 6 8 1.4342 -2.0385 -1.3289 7 6 1.2448 -2.5511 -2.5600 8 8 1.5770 -1.9154 -3.5403 9 6 0.6340 -3.8873 -2.7180 10 6 0.2571 -4.6232 -1.5887 11 6 -0.3197 -5.8725 -1.7290 12 6 -0.5204 -6.4114 -2.9808 13 6 -0.1431 -5.6887 -4.1282 14 6 -0.3485 -6.2392 -5.4147 15 1 -1.1638 -6.9272 -5.5839 16 6 0.5045 -5.8926 -6.4685 17 7 1.6031 -5.2241 -6.2280 18 14 0.0747 -6.3844 -8.2186 19 1 -0.7349 -5.3112 -8.8496 20 1 1.3232 -6.5854 -8.9971 21 1 -0.7060 -7.6476 -8.2003 22 6 0.4386 -4.4174 -3.9887 23 6 3.5385 -0.8613 -1.1719 24 7 4.0921 -2.0716 -0.9592 25 8 4.2462 0.1151 -1.3011 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.7370 1.9350 -0.9239 31 1 1.6189 1.9768 0.8516 32 1 3.1277 1.4432 0.0724 33 1 0.4145 -4.2120 -0.6025 34 1 -0.6108 -6.4307 -0.8516 35 1 -0.9680 -7.3891 -3.0820 36 1 2.1946 -4.9841 -6.9583 37 1 0.7315 -3.8549 -4.8629 38 1 3.5258 -2.8418 -0.7949 39 1 5.0567 -2.1724 -0.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725924202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = -125.135416 kcal Electronic energy + Delta-G solvation = -23271.857280 eV Core-core repulsion = 19757.441946 eV Total energy + Delta-G solvation = -3514.415334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61617 -39.04394 -37.49254 -36.33887 -34.88400 -33.79714 -33.43221 -30.49086 -29.61069 -27.76566 -27.11237 -25.43687 -23.32992 -21.52544 -21.08972 -20.09837 -19.95598 -18.04751 -17.89288 -17.15579 -16.20630 -16.00461 -15.36101 -14.95304 -14.86198 -14.76394 -14.43656 -13.69100 -13.55873 -13.34444 -12.95800 -12.71648 -12.66902 -12.25909 -12.10619 -11.78835 -11.61454 -11.35268 -11.23125 -11.18025 -11.06235 -10.84523 -10.76975 -10.58442 -10.30889 -9.82940 -9.71431 -9.62049 -9.56458 -9.36120 -7.86599 -7.60953 -6.84387 -4.54293 1.81971 2.55131 2.69791 2.88858 3.03380 3.05369 3.06752 3.37506 3.57071 3.86330 4.51687 4.62104 4.71713 4.90816 5.07100 5.26690 5.42534 5.45701 5.55351 5.62899 5.80424 5.84853 5.98735 6.01415 6.20499 6.25593 6.30284 6.47677 6.71137 6.79252 6.83695 6.85790 7.10338 7.20073 7.33402 7.56044 7.62811 7.81882 8.00822 8.20024 8.35513 8.37265 8.67968 8.71875 10.10309 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.004252 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.655323 B = 6583.065972 C = 7156.075526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.151 4.151 4 C 0.074 3.926 5 H 0.116 0.884 6 O -0.347 6.347 7 C 0.508 3.492 8 O -0.508 6.508 9 C -0.119 4.119 10 C -0.190 4.190 11 C -0.106 4.106 12 C -0.195 4.195 13 C 0.095 3.905 14 C -0.461 4.461 15 H 0.082 0.918 16 C 0.071 3.929 17 N -0.796 5.796 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.081 4.081 23 C 0.516 3.484 24 N -0.844 5.844 25 O -0.540 6.540 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.138 0.862 38 H 0.409 0.591 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 5.143 9.955 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.208 4.208 4 C 0.015 3.985 5 H 0.134 0.866 6 O -0.265 6.265 7 C 0.354 3.646 8 O -0.396 6.396 9 C -0.120 4.120 10 C -0.210 4.210 11 C -0.124 4.124 12 C -0.215 4.215 13 C 0.093 3.907 14 C -0.490 4.490 15 H 0.100 0.900 16 C -0.147 4.147 17 N -0.421 5.421 18 Si 0.739 3.261 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.100 4.100 23 C 0.300 3.700 24 N -0.408 5.408 25 O -0.418 6.418 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.239 0.761 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.585 6.177 9.424 11.283 hybrid contribution 0.187 -0.649 -0.869 1.101 sum 0.772 5.527 8.555 10.215 Atomic orbital electron populations 1.21807 0.93425 1.03198 1.01990 1.21071 0.97385 0.96181 0.95231 1.21916 1.02704 0.93969 1.02234 1.23002 0.88611 0.84353 1.02551 0.86593 1.86681 1.74071 1.32431 1.33328 1.22048 0.75223 0.87196 0.80084 1.90802 1.48389 1.60971 1.39454 1.18809 1.06926 0.90367 0.95894 1.20576 1.07685 0.96685 0.96028 1.20526 1.00128 0.95324 0.96438 1.21274 1.08550 0.99414 0.92253 1.17559 0.90087 0.90071 0.92995 1.19581 1.12438 1.24235 0.92784 0.89977 1.25943 0.93784 0.93307 1.01643 1.69723 1.08490 1.29164 1.34759 0.86197 0.78941 0.79982 0.80974 1.19196 1.20181 1.18564 1.21747 0.98601 0.95133 0.94522 1.20747 0.90784 0.83414 0.75016 1.43836 1.11657 1.11080 1.74246 1.90723 1.62956 1.37790 1.50331 0.91183 0.92070 0.92493 0.90008 0.92190 0.91925 0.90954 0.87730 0.88418 0.88234 0.90451 0.84480 0.76107 0.76818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.98 37.16 0.33 -1.29 16 2 C -0.08 -0.95 2.69 -90.62 -0.24 -1.19 16 3 C -0.15 -1.69 8.76 37.16 0.33 -1.36 16 4 C 0.07 1.11 2.04 -27.88 -0.06 1.06 16 5 H 0.12 1.94 7.16 -51.93 -0.37 1.57 16 6 O -0.35 -5.71 6.97 -40.49 -0.28 -5.99 16 7 C 0.51 10.44 7.86 34.63 0.27 10.71 16 8 O -0.51 -11.83 15.59 -19.24 -0.30 -12.13 16 9 C -0.12 -2.63 5.87 -105.05 -0.62 -3.25 16 10 C -0.19 -3.77 9.62 -38.91 -0.37 -4.14 16 11 C -0.11 -2.10 10.01 -39.73 -0.40 -2.50 16 12 C -0.20 -4.33 9.78 -38.81 -0.38 -4.71 16 13 C 0.10 2.38 5.54 -106.88 -0.59 1.79 16 14 C -0.46 -11.58 9.06 -37.73 -0.34 -11.92 16 15 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 16 C 0.07 1.73 5.26 -17.35 -0.09 1.64 16 17 N -0.80 -20.37 10.85 55.55 0.60 -19.77 16 18 Si 0.91 18.27 29.57 -169.99 -5.03 13.24 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 C -0.08 -2.02 8.20 -38.42 -0.31 -2.34 16 23 C 0.52 8.15 7.25 -10.98 -0.08 8.07 16 24 N -0.84 -11.17 8.79 31.22 0.27 -10.89 16 25 O -0.54 -9.75 15.90 5.56 0.09 -9.66 16 26 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 33 H 0.10 1.79 7.59 -52.49 -0.40 1.39 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 37 H 0.14 3.75 5.82 -52.48 -0.31 3.44 16 38 H 0.41 5.15 7.72 -40.82 -0.32 4.84 16 39 H 0.40 4.54 8.93 -40.82 -0.36 4.17 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -28.69 333.97 -7.15 -35.84 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.98 Total: 13.78 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.56 Total: -9.44 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.88 Total: -30.66 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.49 Total: -27.78 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.69 -7.15 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725924202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.299 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds