Wall clock time and date at job start Tue Mar 31 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47136 * 2 1 4 4 C 1.53000 * 109.47045 * 239.99922 * 2 1 3 5 5 H 1.09004 * 109.46943 * 66.46275 * 4 2 1 6 6 O 1.45203 * 109.47391 * 306.46688 * 4 2 1 7 7 C 1.34698 * 117.00147 * 149.99666 * 6 4 2 8 8 O 1.21463 * 120.00341 * 0.02562 * 7 6 4 9 9 C 1.47767 * 119.99872 * 179.97438 * 7 6 4 10 10 C 1.39967 * 120.03156 * 359.72769 * 9 7 6 11 11 C 1.38317 * 120.35463 * 179.76470 * 10 9 7 12 12 C 1.37760 * 120.41558 * 0.51046 * 11 10 9 13 13 C 1.40752 * 120.05346 * 359.74441 * 12 11 10 14 14 C 1.41440 * 120.17838 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99985 * 29.27373 * 14 13 12 16 16 C 1.39935 * 120.00334 * 209.26538 * 14 13 12 17 17 N 1.30825 * 119.99823 * 10.23005 * 16 14 13 18 18 Si 1.86806 * 120.00203 * 190.22460 * 16 14 13 19 19 H 1.48502 * 109.46614 * 90.00575 * 18 16 14 20 20 H 1.48498 * 109.46847 * 210.00556 * 18 16 14 21 21 H 1.48503 * 109.46893 * 330.00341 * 18 16 14 22 22 C 1.39057 * 120.03327 * 180.02562 * 9 7 6 23 23 C 1.50703 * 109.47337 * 186.46407 * 4 2 1 24 24 N 1.34778 * 119.99641 * 108.91484 * 23 4 2 25 25 O 1.21278 * 119.99543 * 288.91920 * 23 4 2 26 26 H 1.08997 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47007 * 299.99856 * 1 2 3 28 28 H 1.08999 * 109.47213 * 59.99732 * 1 2 3 29 29 H 1.08999 * 109.47213 * 120.00268 * 2 1 3 30 30 H 1.08993 * 109.47255 * 295.96068 * 3 2 1 31 31 H 1.08995 * 109.47285 * 55.96655 * 3 2 1 32 32 H 1.09003 * 109.46490 * 175.96188 * 3 2 1 33 33 H 1.07997 * 119.82390 * 359.97438 * 10 9 7 34 34 H 1.07994 * 119.79417 * 180.26024 * 11 10 9 35 35 H 1.08001 * 119.97397 * 179.76830 * 12 11 10 36 36 H 0.97001 * 120.00261 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.19987 * 359.95355 * 22 9 7 38 38 H 0.96992 * 120.00232 * 355.77861 * 24 23 4 39 39 H 0.96998 * 119.99130 * 175.77700 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.7742 -0.1450 -2.1355 6 8 1.4342 -2.0385 -1.3289 7 6 1.2448 -2.5511 -2.5600 8 8 1.5770 -1.9154 -3.5403 9 6 0.6340 -3.8873 -2.7180 10 6 0.2571 -4.6232 -1.5887 11 6 -0.3197 -5.8725 -1.7290 12 6 -0.5204 -6.4114 -2.9808 13 6 -0.1431 -5.6887 -4.1282 14 6 -0.3485 -6.2392 -5.4147 15 1 -1.1638 -6.9272 -5.5839 16 6 0.5045 -5.8926 -6.4685 17 7 1.6031 -5.2241 -6.2280 18 14 0.0747 -6.3844 -8.2186 19 1 -0.7349 -5.3112 -8.8496 20 1 1.3232 -6.5854 -8.9971 21 1 -0.7060 -7.6476 -8.2003 22 6 0.4386 -4.4174 -3.9887 23 6 3.5385 -0.8613 -1.1719 24 7 4.0921 -2.0716 -0.9592 25 8 4.2462 0.1151 -1.3011 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.7370 1.9350 -0.9239 31 1 1.6189 1.9768 0.8516 32 1 3.1277 1.4432 0.0724 33 1 0.4145 -4.2120 -0.6025 34 1 -0.6108 -6.4307 -0.8516 35 1 -0.9680 -7.3891 -3.0820 36 1 2.1946 -4.9841 -6.9583 37 1 0.7315 -3.8549 -4.8629 38 1 3.5258 -2.8418 -0.7949 39 1 5.0567 -2.1724 -0.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725924202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:17 Heat of formation + Delta-G solvation = -142.482029 kcal Electronic energy + Delta-G solvation = -23272.609485 eV Core-core repulsion = 19757.441946 eV Total energy + Delta-G solvation = -3515.167540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05360 -40.49086 -39.15723 -37.81479 -36.05100 -35.55347 -34.67247 -32.22701 -31.35084 -28.98386 -28.04289 -27.22711 -24.96592 -22.85610 -22.65938 -21.54069 -21.24117 -19.70510 -19.16214 -18.62667 -17.84574 -17.39685 -16.90007 -16.51005 -16.39087 -16.09808 -15.76413 -15.20588 -15.06231 -14.63158 -14.49306 -14.30348 -13.74415 -13.59227 -13.39095 -13.02785 -12.99496 -12.85776 -12.78577 -12.59640 -12.51564 -12.21706 -12.10070 -12.03028 -11.75949 -11.53218 -11.32088 -11.13426 -10.96906 -10.77570 -9.60904 -9.37912 -8.62860 -6.41969 0.09676 0.98282 1.28517 1.38084 1.41631 1.45390 1.51369 1.74587 2.19837 2.33985 2.75682 3.52564 3.57082 3.63225 3.71947 3.87948 4.20230 4.27733 4.44961 4.51074 4.64483 4.76134 4.82623 4.93368 4.97514 5.04890 5.09050 5.11636 5.14764 5.29528 5.34979 5.40468 5.45591 5.68183 5.82016 5.88996 6.03508 6.15299 6.24981 6.54215 6.72405 6.88326 6.89897 7.04722 8.33318 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.004252 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.655323 B = 6583.065972 C = 7156.075526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.147 4.147 4 C 0.071 3.929 5 H 0.097 0.903 6 O -0.325 6.325 7 C 0.516 3.484 8 O -0.542 6.542 9 C -0.129 4.129 10 C -0.166 4.166 11 C -0.102 4.102 12 C -0.194 4.194 13 C 0.064 3.936 14 C -0.497 4.497 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.837 5.837 18 Si 0.982 3.018 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.251 1.251 22 C -0.115 4.115 23 C 0.512 3.488 24 N -0.832 5.832 25 O -0.567 6.567 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.284 0.716 37 H 0.103 0.897 38 H 0.414 0.586 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 4.635 12.543 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.204 4.204 4 C 0.013 3.987 5 H 0.115 0.885 6 O -0.242 6.242 7 C 0.364 3.636 8 O -0.433 6.433 9 C -0.130 4.130 10 C -0.185 4.185 11 C -0.120 4.120 12 C -0.214 4.214 13 C 0.062 3.938 14 C -0.527 4.527 15 H 0.103 0.897 16 C -0.185 4.185 17 N -0.464 5.464 18 Si 0.803 3.197 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.174 1.174 22 C -0.135 4.135 23 C 0.296 3.704 24 N -0.396 5.396 25 O -0.447 6.447 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.245 0.755 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.254 5.637 12.056 13.311 hybrid contribution 0.444 -0.454 -1.428 1.563 sum 0.190 5.183 10.628 11.826 Atomic orbital electron populations 1.21816 0.92448 1.02973 1.02994 1.21170 0.98079 0.96223 0.93826 1.21894 1.01703 0.93685 1.03147 1.23258 0.88527 0.83242 1.03701 0.88507 1.86645 1.73603 1.33256 1.30691 1.21827 0.74463 0.86662 0.80688 1.90795 1.49779 1.61777 1.40970 1.18997 1.06913 0.91342 0.95760 1.21052 1.04655 0.96073 0.96695 1.21003 0.98656 0.95346 0.96973 1.21593 1.07415 0.99841 0.92533 1.17880 0.91184 0.90493 0.94227 1.19854 1.13325 1.25554 0.93922 0.89683 1.26769 0.93286 0.92976 1.05440 1.69835 1.09731 1.31095 1.35724 0.85185 0.78705 0.79824 0.75944 1.19189 1.19756 1.17416 1.21518 1.01422 0.95749 0.94838 1.20854 0.90935 0.83725 0.74926 1.43754 1.12463 1.10397 1.73011 1.90716 1.63423 1.38741 1.51775 0.91966 0.89343 0.93307 0.88280 0.92922 0.89081 0.92606 0.83862 0.83846 0.86790 0.90517 0.87892 0.75508 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.98 71.98 0.65 -2.16 16 2 C -0.07 -1.59 2.69 -10.79 -0.03 -1.62 16 3 C -0.15 -3.02 8.76 71.98 0.63 -2.39 16 4 C 0.07 2.09 2.04 29.85 0.06 2.15 16 5 H 0.10 3.29 7.16 -2.39 -0.02 3.28 16 6 O -0.33 -10.18 6.97 -56.08 -0.39 -10.57 16 7 C 0.52 21.19 7.86 70.34 0.55 21.74 16 8 O -0.54 -26.17 15.59 19.95 0.31 -25.86 16 9 C -0.13 -5.67 5.87 -20.14 -0.12 -5.78 16 10 C -0.17 -6.02 9.62 22.71 0.22 -5.80 16 11 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 12 C -0.19 -8.34 9.78 22.77 0.22 -8.12 16 13 C 0.06 3.28 5.54 -21.32 -0.12 3.16 16 14 C -0.50 -25.77 9.06 23.47 0.21 -25.56 16 15 H 0.09 4.16 7.87 -2.91 -0.02 4.13 16 16 C 0.03 1.44 5.26 85.25 0.45 1.89 16 17 N -0.84 -45.16 10.85 21.82 0.24 -44.93 16 18 Si 0.98 38.55 29.57 68.60 2.03 40.58 16 19 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 22 C -0.12 -6.01 8.20 23.02 0.19 -5.82 16 23 C 0.51 15.78 7.25 87.66 0.64 16.41 16 24 N -0.83 -20.94 8.79 -173.53 -1.53 -22.47 16 25 O -0.57 -20.37 15.90 -3.02 -0.05 -20.41 16 26 H 0.06 1.31 7.52 -2.39 -0.02 1.29 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.35 6.33 -2.39 -0.02 1.34 16 33 H 0.14 4.12 7.59 -2.91 -0.02 4.10 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 35 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 37 H 0.10 6.03 5.82 -2.91 -0.02 6.02 16 38 H 0.41 9.63 7.72 -92.71 -0.72 8.92 16 39 H 0.41 8.81 8.93 -92.71 -0.83 7.98 16 Total: -1.00 -65.43 333.97 3.94 -61.49 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.45 Total: 37.52 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 3.77 Total: -15.35 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.29 Total: -67.39 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -0.13 Total: -56.85 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -65.43 3.94 -61.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725924202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.991 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds