Wall clock time and date at job start Tue Mar 31 2020 07:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 O 1.20827 * 119.99828 * 240.00278 * 5 3 2 7 7 O 1.34229 * 120.00089 * 59.99944 * 5 3 2 8 8 C 1.45199 * 116.99866 * 179.97438 * 7 5 3 9 9 C 1.50698 * 109.46961 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00056 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00113 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00127 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99967 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00215 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99892 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47123 * 89.99803 * 16 14 12 18 18 H 1.48497 * 109.47517 * 209.99832 * 16 14 12 19 19 H 1.48506 * 109.47274 * 330.00286 * 16 14 12 20 20 C 1.50705 * 109.47390 * 64.99953 * 3 2 1 21 21 C 1.38236 * 119.99598 * 59.72510 * 20 3 2 22 22 C 1.38235 * 119.99772 * 179.79082 * 21 20 3 23 23 C 1.38230 * 120.00131 * 0.44094 * 22 21 20 24 24 C 1.38235 * 119.99970 * 359.81785 * 23 22 21 25 25 C 1.38229 * 120.00199 * 240.00466 * 20 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.08997 * 109.47251 * 300.00018 * 8 7 5 32 32 H 1.09003 * 109.47360 * 60.00354 * 8 7 5 33 33 H 0.96998 * 119.99742 * 0.02562 * 11 9 8 34 34 H 0.96996 * 120.00342 * 180.02562 * 15 14 12 35 35 H 1.08004 * 119.99950 * 0.02562 * 21 20 3 36 36 H 1.08006 * 119.99632 * 180.27609 * 22 21 20 37 37 H 1.07997 * 119.99830 * 179.83197 * 23 22 21 38 38 H 1.08002 * 120.00174 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.00430 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 8 4.2190 1.9417 0.7444 7 8 4.1273 0.8935 -1.1988 8 6 5.5778 0.9319 -1.2516 9 6 6.0520 0.2710 -2.5203 10 8 5.2466 -0.1869 -3.3032 11 7 7.3709 0.1896 -2.7855 12 6 7.8022 -0.4121 -3.9394 13 1 7.0851 -0.8205 -4.6361 14 6 9.1620 -0.4964 -4.2126 15 7 9.5755 -1.0727 -5.3188 16 14 10.4024 0.2093 -3.0072 17 1 10.7877 -0.8356 -2.0248 18 1 11.6080 0.6628 -3.7461 19 1 9.7973 1.3618 -2.2922 20 6 1.6413 2.1163 1.2877 21 6 2.0721 1.6048 2.4976 22 6 1.7100 2.2254 3.6785 23 6 0.9097 3.3521 3.6501 24 6 0.4745 3.8604 2.4406 25 6 0.8401 3.2424 1.2593 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 5.9148 1.9683 -1.2336 32 1 5.9869 0.4018 -0.3915 33 1 8.0149 0.5561 -2.1596 34 1 10.5247 -1.1319 -5.5093 35 1 2.6947 0.7226 2.5199 36 1 2.0503 1.8283 4.6235 37 1 0.6246 3.8353 4.5729 38 1 -0.1505 4.7410 2.4183 39 1 0.5002 3.6396 0.3144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:06 Heat of formation + Delta-G solvation = -100.678991 kcal Electronic energy + Delta-G solvation = -22445.969702 eV Core-core repulsion = 18932.614878 eV Total energy + Delta-G solvation = -3513.354824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82211 -39.31878 -38.26848 -36.22003 -35.37573 -34.05935 -31.80147 -31.12060 -30.83436 -29.06770 -27.39330 -24.47876 -23.17969 -22.48641 -22.08538 -20.09771 -19.63935 -18.59443 -17.60502 -17.17183 -16.45261 -16.27420 -15.61865 -15.47999 -15.05408 -14.86672 -14.45977 -14.15413 -13.77684 -13.54842 -13.38426 -13.01209 -12.79231 -12.71049 -12.49909 -12.26445 -12.20566 -11.89796 -11.72359 -11.37412 -11.26767 -11.02242 -10.87973 -10.65166 -10.50151 -10.31549 -10.05019 -9.67652 -9.05948 -8.92971 -8.66113 -8.29406 -6.39386 -3.92230 1.11693 1.25790 2.24033 2.65267 2.98759 3.03334 3.12007 3.55689 3.64834 4.03673 4.26806 4.37972 4.59664 4.76497 4.83265 4.88458 4.94719 5.01786 5.11137 5.19792 5.26020 5.33571 5.38569 5.47331 5.54734 5.58047 5.67856 5.75353 5.85051 5.86692 5.94569 6.09964 6.27469 6.34146 6.41558 6.52767 6.81737 7.44818 7.82000 8.01015 8.47876 8.83652 9.29905 9.65722 10.72935 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003125 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.884263 B = 8958.254787 C = 9585.926587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.039 4.039 4 H 0.117 0.883 5 C 0.462 3.538 6 O -0.505 6.505 7 O -0.322 6.322 8 C 0.057 3.943 9 C 0.448 3.552 10 O -0.557 6.557 11 N -0.580 5.580 12 C -0.308 4.308 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.875 5.875 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.069 4.069 21 C -0.085 4.085 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.108 4.108 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.373 0.627 34 H 0.275 0.725 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.415 7.528 17.275 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.058 4.058 4 H 0.135 0.865 5 C 0.304 3.696 6 O -0.393 6.393 7 O -0.236 6.236 8 C -0.020 4.020 9 C 0.233 3.767 10 O -0.438 6.438 11 N -0.220 5.220 12 C -0.436 4.436 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.514 5.514 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.194 1.194 20 C -0.069 4.069 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.126 4.126 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.206 0.794 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.542 7.278 16.824 24.691 hybrid contribution 1.449 0.676 0.931 1.850 sum -15.092 7.954 17.754 24.622 Atomic orbital electron populations 1.21752 0.94490 1.02173 1.02165 1.21585 0.97046 0.92646 1.04068 1.20041 0.88184 0.99754 0.97790 0.86486 1.23584 0.91784 0.74728 0.79526 1.90668 1.65606 1.42431 1.40632 1.86554 1.22757 1.71735 1.42590 1.22746 0.77481 1.02393 0.99409 1.19196 0.83390 0.86228 0.87893 1.90603 1.53189 1.50711 1.49338 1.42040 1.04940 1.53458 1.21560 1.19424 0.93254 1.33817 0.97129 0.86003 1.25034 0.96944 0.97200 0.96697 1.69608 1.16102 1.42100 1.23631 0.86684 0.81943 0.79604 0.81303 1.19404 1.19943 1.19361 1.19290 0.98408 0.95937 0.93285 1.20944 0.97906 0.99668 0.91823 1.21110 0.98508 0.96286 0.98044 1.21149 0.98159 0.96541 0.97905 1.21075 1.00627 1.00011 0.92430 1.21015 0.98135 0.94896 0.98571 0.92125 0.92465 0.92265 0.91221 0.89350 0.89493 0.89490 0.79401 0.91387 0.86277 0.86086 0.86228 0.86043 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.73 37.16 0.36 -0.89 16 2 C -0.12 -1.20 5.26 -26.73 -0.14 -1.34 16 3 C -0.04 -0.44 2.48 -92.92 -0.23 -0.68 16 4 H 0.12 1.17 7.88 -51.93 -0.41 0.77 16 5 C 0.46 7.01 7.13 36.00 0.26 7.27 16 6 O -0.51 -8.53 14.88 -18.75 -0.28 -8.81 16 7 O -0.32 -5.71 9.56 -45.90 -0.44 -6.15 16 8 C 0.06 1.04 5.94 36.00 0.21 1.25 16 9 C 0.45 10.37 7.86 -10.99 -0.09 10.29 16 10 O -0.56 -15.22 16.08 -14.12 -0.23 -15.45 16 11 N -0.58 -13.79 5.09 -10.96 -0.06 -13.84 16 12 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 13 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 14 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 15 N -0.88 -25.15 13.96 55.50 0.77 -24.38 16 16 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 20 C -0.07 -0.77 3.37 -104.62 -0.35 -1.12 16 21 C -0.09 -0.96 7.89 -39.58 -0.31 -1.27 16 22 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 23 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 25 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.70 7.21 -51.93 -0.37 0.33 16 30 H 0.09 1.03 7.99 -51.93 -0.42 0.61 16 31 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 33 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 34 H 0.28 7.28 8.31 -40.82 -0.34 6.95 16 35 H 0.12 1.34 7.49 -52.48 -0.39 0.95 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -33.47 337.24 -7.11 -40.59 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.14 Total: 8.71 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.11 Total: -0.11 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.72 Total: -38.22 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.94 Total: -30.41 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.47 -7.11 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.092 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds