Wall clock time and date at job start Tue Mar 31 2020 07:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 O 1.20827 * 119.99828 * 240.00278 * 5 3 2 7 7 O 1.34229 * 120.00089 * 59.99944 * 5 3 2 8 8 C 1.45199 * 116.99866 * 179.97438 * 7 5 3 9 9 C 1.50698 * 109.46961 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00056 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00113 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00127 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99967 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00215 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99892 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47123 * 89.99803 * 16 14 12 18 18 H 1.48497 * 109.47517 * 209.99832 * 16 14 12 19 19 H 1.48506 * 109.47274 * 330.00286 * 16 14 12 20 20 C 1.50705 * 109.47390 * 64.99953 * 3 2 1 21 21 C 1.38236 * 119.99598 * 59.72510 * 20 3 2 22 22 C 1.38235 * 119.99772 * 179.79082 * 21 20 3 23 23 C 1.38230 * 120.00131 * 0.44094 * 22 21 20 24 24 C 1.38235 * 119.99970 * 359.81785 * 23 22 21 25 25 C 1.38229 * 120.00199 * 240.00466 * 20 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.08997 * 109.47251 * 300.00018 * 8 7 5 32 32 H 1.09003 * 109.47360 * 60.00354 * 8 7 5 33 33 H 0.96998 * 119.99742 * 0.02562 * 11 9 8 34 34 H 0.96996 * 120.00342 * 180.02562 * 15 14 12 35 35 H 1.08004 * 119.99950 * 0.02562 * 21 20 3 36 36 H 1.08006 * 119.99632 * 180.27609 * 22 21 20 37 37 H 1.07997 * 119.99830 * 179.83197 * 23 22 21 38 38 H 1.08002 * 120.00174 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.00430 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 8 4.2190 1.9417 0.7444 7 8 4.1273 0.8935 -1.1988 8 6 5.5778 0.9319 -1.2516 9 6 6.0520 0.2710 -2.5203 10 8 5.2466 -0.1869 -3.3032 11 7 7.3709 0.1896 -2.7855 12 6 7.8022 -0.4121 -3.9394 13 1 7.0851 -0.8205 -4.6361 14 6 9.1620 -0.4964 -4.2126 15 7 9.5755 -1.0727 -5.3188 16 14 10.4024 0.2093 -3.0072 17 1 10.7877 -0.8356 -2.0248 18 1 11.6080 0.6628 -3.7461 19 1 9.7973 1.3618 -2.2922 20 6 1.6413 2.1163 1.2877 21 6 2.0721 1.6048 2.4976 22 6 1.7100 2.2254 3.6785 23 6 0.9097 3.3521 3.6501 24 6 0.4745 3.8604 2.4406 25 6 0.8401 3.2424 1.2593 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 5.9148 1.9683 -1.2336 32 1 5.9869 0.4018 -0.3915 33 1 8.0149 0.5561 -2.1596 34 1 10.5247 -1.1319 -5.5093 35 1 2.6947 0.7226 2.5199 36 1 2.0503 1.8283 4.6235 37 1 0.6246 3.8353 4.5729 38 1 -0.1505 4.7410 2.4183 39 1 0.5002 3.6396 0.3144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:06 Heat of formation + Delta-G solvation = -120.836748 kcal Electronic energy + Delta-G solvation = -22446.843808 eV Core-core repulsion = 18932.614878 eV Total energy + Delta-G solvation = -3514.228930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.98606 -40.48087 -39.84550 -37.54312 -36.24275 -36.09605 -33.88152 -31.82408 -31.55949 -30.52581 -28.46155 -26.37746 -23.92045 -23.27017 -23.11607 -21.56103 -21.06767 -20.53648 -18.82321 -18.17196 -17.79150 -17.48602 -17.28135 -16.66817 -16.37320 -15.90996 -15.60357 -15.41398 -15.17336 -14.78158 -14.35880 -14.25802 -14.14175 -13.97369 -13.89034 -13.45751 -13.29319 -13.01743 -12.92031 -12.47597 -12.45299 -12.06416 -12.01872 -11.90221 -11.76865 -11.64575 -11.60084 -11.45828 -10.62382 -10.35691 -9.77399 -9.66273 -8.47433 -6.10576 0.36347 0.54321 1.05288 1.28452 1.32164 1.38839 1.45971 1.73794 2.18778 2.74802 2.96258 3.06821 3.42222 3.63144 3.81334 3.93816 4.00929 4.08477 4.10696 4.17682 4.21240 4.31191 4.44885 4.51742 4.65753 4.73106 4.85774 5.03456 5.10645 5.17461 5.18967 5.29026 5.38440 5.46511 5.58007 5.64770 5.66995 5.83805 6.12576 6.44569 6.61204 6.75901 7.23985 7.75622 8.69197 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003125 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.884263 B = 8958.254787 C = 9585.926587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.033 4.033 4 H 0.132 0.868 5 C 0.463 3.537 6 O -0.521 6.521 7 O -0.342 6.342 8 C 0.067 3.933 9 C 0.449 3.551 10 O -0.607 6.607 11 N -0.576 5.576 12 C -0.334 4.334 13 H 0.061 0.939 14 C -0.007 4.007 15 N -0.925 5.925 16 Si 0.961 3.039 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.233 1.233 20 C -0.083 4.083 21 C -0.105 4.105 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.393 0.607 34 H 0.282 0.718 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 9.670 20.237 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.052 4.052 4 H 0.150 0.850 5 C 0.307 3.693 6 O -0.410 6.410 7 O -0.257 6.257 8 C -0.011 4.011 9 C 0.236 3.764 10 O -0.491 6.491 11 N -0.218 5.218 12 C -0.462 4.462 13 H 0.079 0.921 14 C -0.207 4.207 15 N -0.564 5.564 16 Si 0.780 3.220 17 H -0.179 1.179 18 H -0.196 1.196 19 H -0.156 1.156 20 C -0.083 4.083 21 C -0.123 4.123 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.134 4.134 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.229 0.771 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.717 9.431 19.809 27.582 hybrid contribution 1.386 -0.016 -0.020 1.386 sum -15.330 9.415 19.789 26.744 Atomic orbital electron populations 1.21705 0.92731 1.02805 1.02664 1.21561 0.98506 0.91876 1.03150 1.20158 0.85445 1.00659 0.98959 0.85003 1.24287 0.93011 0.73663 0.78360 1.90650 1.66241 1.43168 1.40916 1.86568 1.22452 1.72562 1.44121 1.22587 0.78320 1.03411 0.96733 1.20151 0.82697 0.84694 0.88869 1.90579 1.54503 1.52518 1.51533 1.41819 1.05791 1.53443 1.20737 1.19007 0.93074 1.35856 0.98289 0.92055 1.26077 0.98900 0.96811 0.98905 1.69773 1.17197 1.43289 1.26178 0.85427 0.78042 0.80033 0.78478 1.17896 1.19588 1.15620 1.19305 0.99505 0.96806 0.92701 1.21020 0.98660 0.99957 0.92688 1.21363 0.98687 0.96682 0.98184 1.21501 0.97291 0.96037 0.99098 1.21434 1.00375 1.00529 0.92034 1.21282 0.97793 0.94395 0.99885 0.91464 0.92086 0.91558 0.91334 0.91058 0.86888 0.86770 0.77133 0.90781 0.87276 0.84669 0.83810 0.83580 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.73 71.98 0.70 -1.51 16 2 C -0.11 -2.31 5.26 30.59 0.16 -2.14 16 3 C -0.03 -0.74 2.48 -12.29 -0.03 -0.77 16 4 H 0.13 2.47 7.88 -2.39 -0.02 2.45 16 5 C 0.46 13.63 7.13 71.24 0.51 14.14 16 6 O -0.52 -16.85 14.88 21.96 0.33 -16.52 16 7 O -0.34 -11.95 9.56 -45.05 -0.43 -12.38 16 8 C 0.07 2.30 5.94 71.24 0.42 2.72 16 9 C 0.45 20.94 7.86 87.66 0.69 21.63 16 10 O -0.61 -34.55 16.08 15.72 0.25 -34.29 16 11 N -0.58 -27.30 5.09 -306.98 -1.56 -28.86 16 12 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 13 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 14 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 15 N -0.92 -54.72 13.96 21.66 0.30 -54.42 16 16 Si 0.96 38.09 27.74 68.60 1.90 39.99 16 17 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 20 C -0.08 -1.73 3.37 -19.87 -0.07 -1.80 16 21 C -0.11 -2.26 7.89 22.27 0.18 -2.08 16 22 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 25 C -0.12 -1.99 9.67 22.27 0.22 -1.78 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.92 7.38 -2.39 -0.02 0.90 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.38 7.21 -2.39 -0.02 1.36 16 30 H 0.07 1.69 7.99 -2.39 -0.02 1.67 16 31 H 0.11 3.35 8.13 -2.39 -0.02 3.33 16 32 H 0.11 3.35 8.13 -2.39 -0.02 3.33 16 33 H 0.39 15.32 5.76 -92.71 -0.53 14.79 16 34 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.11 2.45 7.49 -2.91 -0.02 2.43 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.14 1.83 7.95 -2.91 -0.02 1.81 16 Total: -1.00 -76.67 337.24 6.03 -70.64 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.47 Total: 31.20 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 4.77 Total: 4.64 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.26 Total: -83.28 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: 0.15 Total: -63.19 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -76.67 6.03 -70.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.196 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds