Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38367 * 119.84794 * 59.72430 * 4 2 1 6 6 C 1.37942 * 120.15183 * 179.72293 * 5 4 2 7 7 C 1.39631 * 119.84520 * 0.57018 * 6 5 4 8 8 C 1.47725 * 120.15148 * 179.68024 * 7 6 5 9 9 O 1.21475 * 120.00279 * 180.02562 * 8 7 6 10 10 O 1.34718 * 119.99988 * 0.02662 * 8 7 6 11 11 C 1.45197 * 117.00121 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47318 * 179.97438 * 11 10 8 13 13 O 1.21297 * 119.99765 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00531 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00446 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99864 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00104 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00228 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46957 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47376 * 239.99919 * 19 17 15 23 23 C 1.39631 * 119.69961 * 359.70476 * 7 6 5 24 24 C 1.37940 * 119.84688 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08004 * 119.92367 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.08250 * 180.27370 * 6 5 4 34 34 H 1.08996 * 109.47205 * 300.00248 * 11 10 8 35 35 H 1.09006 * 109.47128 * 59.99652 * 11 10 8 36 36 H 0.97006 * 119.99621 * 359.97438 * 14 12 11 37 37 H 0.97002 * 120.00241 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.07293 * 179.97438 * 23 7 6 39 39 H 1.08004 * 119.92143 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6914 -0.2382 -2.4856 6 6 2.1524 -0.8803 -3.6161 7 6 2.9550 -2.0160 -3.4917 8 6 3.4466 -2.7130 -4.6979 9 8 4.1444 -3.7011 -4.5865 10 8 3.1212 -2.2527 -5.9215 11 6 3.6399 -2.9871 -7.0615 12 6 3.1750 -2.3306 -8.3358 13 8 2.4749 -1.3413 -8.2878 14 7 3.5363 -2.8432 -9.5287 15 6 3.1129 -2.2463 -10.6880 16 1 2.4895 -1.3654 -10.6453 17 6 3.4858 -2.7745 -11.9178 18 7 4.2448 -3.8460 -11.9698 19 14 2.9083 -1.9615 -13.4974 20 1 2.0720 -0.7793 -13.1686 21 1 4.0867 -1.5285 -14.2907 22 1 2.1078 -2.9301 -14.2887 23 6 3.2905 -2.4904 -2.2220 24 6 2.8281 -1.8347 -1.1000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0663 0.6374 -2.5804 33 1 1.8893 -0.5082 -4.5953 34 1 4.7294 -2.9868 -7.0287 35 1 3.2758 -4.0140 -7.0285 36 1 4.0959 -3.6346 -9.5671 37 1 4.5055 -4.2146 -12.8284 38 1 3.9106 -3.3686 -2.1188 39 1 3.0871 -2.2004 -0.1173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -112.547827 kcal Electronic energy + Delta-G solvation = -21824.894498 eV Core-core repulsion = 18311.025003 eV Total energy + Delta-G solvation = -3513.869495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51886 -39.37070 -38.08203 -36.12488 -35.52081 -33.99564 -31.40903 -31.25881 -30.47206 -28.29264 -27.48068 -25.04733 -24.15421 -22.87381 -21.44544 -20.09716 -19.57100 -18.07235 -18.00161 -16.90413 -16.26323 -15.95348 -15.66108 -15.26302 -14.75719 -14.43308 -14.18629 -14.14323 -13.93425 -13.80893 -13.56133 -13.27191 -12.75261 -12.71551 -12.46311 -12.13238 -12.00088 -11.62174 -11.59096 -11.48020 -11.16702 -11.14957 -10.92279 -10.43462 -10.39724 -10.38823 -10.29055 -9.61341 -9.15933 -8.98108 -8.51850 -8.07974 -6.49671 -3.91663 0.59519 1.21260 2.56889 2.71597 3.12024 3.24107 3.31668 3.64951 3.74746 4.11550 4.27277 4.44610 4.64151 4.78986 4.82433 4.83406 5.03719 5.07810 5.15599 5.21016 5.28620 5.29067 5.49357 5.51049 5.52211 5.61120 5.71113 5.72564 5.83381 5.87889 5.89053 6.04621 6.15208 6.22498 6.36002 6.61626 6.68905 7.48315 7.85621 7.97203 8.48898 9.07499 9.39839 9.89622 10.67658 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031960 B = 0.002625 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.877077 B =10662.710892 C =11347.529535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.046 4.046 5 C -0.130 4.130 6 C -0.054 4.054 7 C -0.125 4.125 8 C 0.504 3.496 9 O -0.513 6.513 10 O -0.321 6.321 11 C 0.061 3.939 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.553 5.553 15 C -0.301 4.301 16 H 0.107 0.893 17 C 0.024 3.976 18 N -0.897 5.897 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.053 4.053 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.395 0.605 37 H 0.273 0.727 38 H 0.137 0.863 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 4.808 22.946 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.047 4.047 5 C -0.148 4.148 6 C -0.072 4.072 7 C -0.126 4.126 8 C 0.349 3.651 9 O -0.404 6.404 10 O -0.235 6.235 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.460 6.460 14 N -0.190 5.190 15 C -0.430 4.430 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.538 5.538 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.071 4.071 24 C -0.152 4.152 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.590 5.084 22.789 23.624 hybrid contribution 0.309 -0.436 -0.978 1.114 sum -3.281 4.648 21.811 22.541 Atomic orbital electron populations 1.21874 0.93958 1.02260 1.02216 1.20216 0.96267 0.96267 0.95167 1.21872 1.01394 0.94822 1.02215 1.20173 0.95064 0.94477 0.94945 1.20997 1.01420 1.00942 0.91421 1.21657 0.92810 0.92542 1.00191 1.19146 1.03957 0.98620 0.90870 1.21263 0.77531 0.82208 0.84113 1.90809 1.36130 1.25757 1.87664 1.86585 1.68763 1.54431 1.13764 1.22766 0.99630 0.95654 0.83594 1.19306 0.86772 0.87621 0.83896 1.90557 1.41338 1.27490 1.86627 1.41710 1.45752 1.27650 1.03927 1.19772 1.29697 1.11443 0.82125 0.87559 1.25319 0.96589 0.96242 0.99676 1.69624 1.35590 1.21491 1.27068 0.85741 0.78478 0.79145 0.80633 1.19087 1.20625 1.20620 1.21249 0.96657 0.98753 0.90446 1.20970 0.99582 0.96158 0.98475 0.92378 0.92234 0.92132 0.90224 0.92379 0.92141 0.92229 0.85209 0.83694 0.89450 0.89454 0.77142 0.91679 0.84514 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.00 37.16 0.33 -0.57 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.69 16 3 C -0.15 -0.91 9.01 37.16 0.33 -0.57 16 4 C -0.05 -0.42 4.79 -104.53 -0.50 -0.92 16 5 C -0.13 -1.32 8.69 -39.64 -0.34 -1.67 16 6 C -0.05 -0.69 9.62 -39.17 -0.38 -1.06 16 7 C -0.12 -1.75 5.87 -104.98 -0.62 -2.37 16 8 C 0.50 8.66 7.90 34.61 0.27 8.93 16 9 O -0.51 -9.51 16.14 -19.25 -0.31 -9.82 16 10 O -0.32 -6.21 9.01 -47.22 -0.43 -6.63 16 11 C 0.06 1.20 5.95 36.00 0.21 1.41 16 12 C 0.44 10.69 7.86 -10.99 -0.09 10.61 16 13 O -0.58 -16.03 16.08 -14.12 -0.23 -16.26 16 14 N -0.55 -14.09 5.29 -10.97 -0.06 -14.15 16 15 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 16 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 18 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 19 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.05 -0.62 9.60 -39.17 -0.38 -1.00 16 24 C -0.13 -1.26 9.65 -39.64 -0.38 -1.64 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.39 7.36 -51.93 -0.38 0.00 16 28 H 0.08 0.46 7.87 -51.93 -0.41 0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 1.08 7.08 -52.48 -0.37 0.71 16 33 H 0.15 1.96 7.61 -52.49 -0.40 1.56 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.14 1.53 7.65 -52.49 -0.40 1.13 16 39 H 0.13 0.89 7.94 -52.48 -0.42 0.47 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -32.17 341.74 -7.35 -39.52 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.13 Total: 7.41 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.05 Total: 2.50 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.67 Total: -37.61 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.96 Total: -32.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.17 -7.35 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.026 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds