Wall clock time and date at job start Tue Mar 31 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38367 * 119.84794 * 59.72430 * 4 2 1 6 6 C 1.37942 * 120.15183 * 179.72293 * 5 4 2 7 7 C 1.39631 * 119.84520 * 0.57018 * 6 5 4 8 8 C 1.47725 * 120.15148 * 179.68024 * 7 6 5 9 9 O 1.21475 * 120.00279 * 180.02562 * 8 7 6 10 10 O 1.34718 * 119.99988 * 0.02662 * 8 7 6 11 11 C 1.45197 * 117.00121 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47318 * 179.97438 * 11 10 8 13 13 O 1.21297 * 119.99765 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00531 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00446 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99864 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00104 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00228 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46957 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47376 * 239.99919 * 19 17 15 23 23 C 1.39631 * 119.69961 * 359.70476 * 7 6 5 24 24 C 1.37940 * 119.84688 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08004 * 119.92367 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.08250 * 180.27370 * 6 5 4 34 34 H 1.08996 * 109.47205 * 300.00248 * 11 10 8 35 35 H 1.09006 * 109.47128 * 59.99652 * 11 10 8 36 36 H 0.97006 * 119.99621 * 359.97438 * 14 12 11 37 37 H 0.97002 * 120.00241 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.07293 * 179.97438 * 23 7 6 39 39 H 1.08004 * 119.92143 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6914 -0.2382 -2.4856 6 6 2.1524 -0.8803 -3.6161 7 6 2.9550 -2.0160 -3.4917 8 6 3.4466 -2.7130 -4.6979 9 8 4.1444 -3.7011 -4.5865 10 8 3.1212 -2.2527 -5.9215 11 6 3.6399 -2.9871 -7.0615 12 6 3.1750 -2.3306 -8.3358 13 8 2.4749 -1.3413 -8.2878 14 7 3.5363 -2.8432 -9.5287 15 6 3.1129 -2.2463 -10.6880 16 1 2.4895 -1.3654 -10.6453 17 6 3.4858 -2.7745 -11.9178 18 7 4.2448 -3.8460 -11.9698 19 14 2.9083 -1.9615 -13.4974 20 1 2.0720 -0.7793 -13.1686 21 1 4.0867 -1.5285 -14.2907 22 1 2.1078 -2.9301 -14.2887 23 6 3.2905 -2.4904 -2.2220 24 6 2.8281 -1.8347 -1.1000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0663 0.6374 -2.5804 33 1 1.8893 -0.5082 -4.5953 34 1 4.7294 -2.9868 -7.0287 35 1 3.2758 -4.0140 -7.0285 36 1 4.0959 -3.6346 -9.5671 37 1 4.5055 -4.2146 -12.8284 38 1 3.9106 -3.3686 -2.1188 39 1 3.0871 -2.2004 -0.1173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:42 Heat of formation + Delta-G solvation = -130.563081 kcal Electronic energy + Delta-G solvation = -21825.675698 eV Core-core repulsion = 18311.025003 eV Total energy + Delta-G solvation = -3514.650695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.80322 -40.46691 -39.88695 -37.57146 -36.26521 -36.05725 -33.44523 -32.16652 -31.40798 -29.89653 -27.93994 -26.77473 -25.39077 -23.74655 -22.52204 -21.47084 -20.87969 -20.10121 -19.27038 -18.23126 -17.75638 -17.55607 -16.85329 -16.49014 -16.07935 -15.81922 -15.78958 -15.45872 -14.90636 -14.66051 -14.52472 -14.30686 -14.04085 -13.92959 -13.59126 -13.47196 -13.31204 -12.95936 -12.88030 -12.48580 -12.33150 -12.11686 -12.00405 -11.96089 -11.92907 -11.61405 -11.60571 -11.52900 -10.54713 -10.14113 -10.02334 -9.85487 -8.54249 -6.05113 -0.40214 0.35597 1.29784 1.33101 1.39312 1.43622 1.58173 1.83881 2.28478 2.71888 2.99682 3.11072 3.52156 3.71783 3.76335 3.96262 3.99866 4.11152 4.15261 4.18665 4.33373 4.35344 4.46723 4.51193 4.83360 4.86043 4.94607 5.02838 5.04129 5.09322 5.19928 5.28587 5.33680 5.35444 5.40240 5.43162 5.62667 5.85428 5.86761 6.42246 6.55938 7.00603 7.36922 7.90196 8.63076 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031960 B = 0.002625 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.877077 B =10662.710892 C =11347.529535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.146 4.146 4 C -0.036 4.036 5 C -0.129 4.129 6 C -0.067 4.067 7 C -0.152 4.152 8 C 0.504 3.496 9 O -0.532 6.532 10 O -0.339 6.339 11 C 0.071 3.929 12 C 0.437 3.563 13 O -0.617 6.617 14 N -0.557 5.557 15 C -0.337 4.337 16 H 0.085 0.915 17 C -0.010 4.010 18 N -0.915 5.915 19 Si 1.000 3.000 20 H -0.271 1.271 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.055 4.055 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.400 0.600 37 H 0.281 0.719 38 H 0.140 0.860 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 5.109 24.692 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.204 4.204 4 C -0.036 4.036 5 C -0.146 4.146 6 C -0.085 4.085 7 C -0.153 4.153 8 C 0.351 3.649 9 O -0.424 6.424 10 O -0.254 6.254 11 C -0.006 4.006 12 C 0.224 3.776 13 O -0.503 6.503 14 N -0.195 5.195 15 C -0.466 4.466 16 H 0.103 0.897 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.822 3.178 20 H -0.195 1.195 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.073 4.073 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.786 5.359 24.549 25.410 hybrid contribution 0.359 -0.505 -1.395 1.526 sum -3.428 4.854 23.154 23.904 Atomic orbital electron populations 1.21886 0.93449 1.02214 1.02817 1.20296 0.96580 0.96420 0.94337 1.21884 1.01169 0.94493 1.02814 1.20554 0.93617 0.93956 0.95480 1.21198 1.01154 1.01165 0.91118 1.21583 0.93593 0.92860 1.00464 1.19145 1.06078 0.99749 0.90308 1.21838 0.77020 0.82100 0.83950 1.90780 1.37227 1.26676 1.87689 1.86590 1.69310 1.54961 1.14511 1.22557 1.00573 0.95711 0.81797 1.20032 0.85596 0.86954 0.85026 1.90521 1.43019 1.29334 1.87460 1.41742 1.45877 1.27787 1.04046 1.19761 1.31241 1.11946 0.83684 0.89744 1.26158 0.96084 0.96543 1.02249 1.69681 1.35523 1.21970 1.28365 0.84779 0.78310 0.78144 0.76535 1.19528 1.19394 1.19384 1.21390 0.96758 0.99068 0.90118 1.21337 0.98429 0.95566 0.99060 0.92754 0.90723 0.92554 0.88458 0.92757 0.92570 0.90716 0.83467 0.85483 0.87519 0.87529 0.76543 0.90921 0.84219 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.00 71.98 0.65 -0.76 16 2 C -0.06 -0.59 3.09 -11.54 -0.04 -0.63 16 3 C -0.15 -1.41 9.01 71.98 0.65 -0.76 16 4 C -0.04 -0.57 4.79 -19.80 -0.09 -0.66 16 5 C -0.13 -2.48 8.69 22.23 0.19 -2.29 16 6 C -0.07 -1.73 9.62 22.54 0.22 -1.52 16 7 C -0.15 -4.31 5.87 -20.10 -0.12 -4.43 16 8 C 0.50 17.72 7.90 70.33 0.56 18.27 16 9 O -0.53 -19.88 16.14 19.92 0.32 -19.56 16 10 O -0.34 -13.52 9.01 -49.89 -0.45 -13.97 16 11 C 0.07 2.82 5.95 71.23 0.42 3.24 16 12 C 0.44 21.95 7.86 87.66 0.69 22.64 16 13 O -0.62 -35.73 16.08 15.72 0.25 -35.48 16 14 N -0.56 -29.13 5.29 -307.00 -1.62 -30.76 16 15 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 16 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 17 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 18 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 19 Si 1.00 42.33 29.55 68.60 2.03 44.36 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 C -0.06 -1.24 9.60 22.54 0.22 -1.02 16 24 C -0.13 -2.05 9.65 22.23 0.21 -1.83 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.59 7.36 -2.39 -0.02 0.57 16 28 H 0.10 0.71 7.87 -2.39 -0.02 0.69 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.59 7.39 -2.39 -0.02 0.57 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.15 2.25 7.08 -2.91 -0.02 2.23 16 33 H 0.13 3.69 7.61 -2.91 -0.02 3.67 16 34 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 36 H 0.40 19.71 7.90 -92.70 -0.73 18.98 16 37 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.14 2.99 7.65 -2.91 -0.02 2.97 16 39 H 0.16 1.56 7.94 -2.91 -0.02 1.54 16 Total: -1.00 -70.25 341.74 5.99 -64.26 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.34 Total: 28.03 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.84 Total: 11.87 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.34 Total: -79.51 kcal Atomic # 8 Polarization: -69.13 SS G_CDS: 0.12 Total: -69.00 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.25 5.99 -64.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.304 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds